ID:

dsi_2175

 Coordinate:

3l:15134250-15134475 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4

Flybase annnotation

exon [3l_15134476_15134966_-]; CDS [3l_15134476_15134527_-]; exon [3l_15134156_15134249_-]; CDS [3l_15134156_15134249_-]; intron [3l_15134250_15134475_-]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAATATTGATAGTAATAATGGTTAATAATGCCACAATAGACCCTTTCAAGAGAACAGCTGTTATGTCACAAAAACATACTCTTTTCCTTTCTCTCTCTCTCTCTCTCTCTCTATCTGCCGCTCTTGCTCTCTGGCTCTGTTAACTTTTTGTTTTGCCGGCGTTTTCCACTGTAAATACGTATTTTATAGCTTTCCATCGCATGTTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC
******************************************************************************************************************************************.....................................(((((....)).....)))...********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 O002
Head
 M023
head
..............................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGCGG.... 20 0 1 1.00 1 0 1 0 0 0 0
........TCAACAAGGGACCCAGCAA........................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................TTTGAAAAATTCGAAAGCATCAAG............ 24 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................CTGCCGCTCTTGCTCTCTGGCTCT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................TCTTTTCCTTTCTCTCTC.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................CGAAAGCATCAAGGAGAGCGGCC.. 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GCGGCCTGGCACCAAATTTTGAAAA............................ 25 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................................AAGAGCACAGCTGTTAGGAC........................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 1
........................................................................................................................................ACTCTTTTCCTTACT............................................................................................................................................................................... 15 1 13 0.08 1 0 0 1 0 0 0
......................................................................GTAAGACTGGTAAATAATGC............................................................................................................................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0 0

Anti-sense strand reads

CATGTGTTAGTTGTTCCCTGGGTCGTTTTAACAACGATTTTGCGCAGCGCCACTCAGGTTTTATAACTATCATTATTACCAATTATTACGGTGTTATCTGGGAAAGTTCTCTTGTCGACAATACAGTGTTTTTGTATGAGAAAAGGAAAGAGAGAGAGAGAGAGAGAGAGATAGACGGCGAGAACGAGAGACCGAGACAATTGAAAAACAAAACGGCCGCAAAAGGTGACATTTATGCATAAAATATCGAAAGGTAGCGTACAAAAGGTAGGCGTCCGGACCGTGGTTTAAAACTTTTTAAGCTTTCGTAGTTCCTCTCGCCGGCG
*********************************************************************************************************************************.....................................(((((....)).....)))...****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body
................................................GCCACTCAGGTTTTATAA.................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGATAGA....................................................................................................................................................... 26 0 4 1.00 4 0 4 0 0 0 0 0 0
...GTGATAGCTGTACCCTGGG................................................................................................................................................................................................................................................................................................................ 19 3 9 0.33 3 0 0 3 0 0 0 0 0
..........................................................................................................................................................AGAGAGAGAGAGAGAGATAGA....................................................................................................................................................... 21 0 20 0.15 3 0 0 0 0 3 0 0 0
....................................................................................................................................................................................................................................................................TCAGAAGGGAGGCGTCCGGA.............................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0
........................................................................................................................................TGAGAACAGGAAAGA............................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0 0
...................................................................................................GGGAAAGTTCTCCGGTC.................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 1 0 0 0 0
..............................................................................................................................................AAGGAAAGAGAGACAG........................................................................................................................................................................ 16 1 16 0.06 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................GAGAGAGAGAGAGAGAT.......................................................................................................................................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0
.....................................................GCAGGTTTTATTAATATCAT............................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:15134200-15134525 - dsi_2175 GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTCTCTC--TCTCTCTCT------ATC------TGC--------CGC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------
droSec2 scaffold_0:7609965-7610278 - GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTC------T--------------ATC------TGC--------CGC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTACACTGTAAATACGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------
dm3 chr3L:15500617-15500948 - GTACACAATCAACAAGGGACCTAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTCTCTC--TCTCTATATATCTGCCTC------TGC--------CTC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACAGTAAATGCGTA-TTTTAT--AGCTTTCC-----------ATGGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------
droEre2 scaffold_4784:17756554-17756887 - GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TCCATGATAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTC-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTC------A----ACAAATACG------------A----ATA-----------------------------------------------------------------------------------CAAATGCTTT--------------AAGAGAACATATGTAGTTTAAGAGAGGAGCAGAAAATCTCTGGCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAAT-------TTTAT--AGCTTTCC-----------ATTGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAAAGCGGTCGC------------
droYak3 3L:18015907-18016242 - GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATGATAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTC------A----ACAAATACG------------A----ATA-----------------------------------------------------------------------------------CAAATGCTTT--------------AAGAGAGCAC----AGTTTAAGAGAAGAGACGCAAGTCTGCGGCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATGCGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------
droEug1 scf7180000408844:227241-227589 - GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTACAAAAT--------------------------------A----ATAATAATAAT-ATTA-------------ATAAT-GGTTAATAATGG-----------------TACA----TTA-AACCCTTTGTA------------------AG-------AG----CA------AAGC--T--------------------CTGCCCAGCTGTTATGTCACAAAA---------------------------------------------------------------CATACTCTTTTTCATTCTC--------TCT-TTGCCGCCC----ACT--------CTCTCCC------TT------------------------------ATC------TTT--------CGC------T--CACGCTCT------------CT---------------------------------------ATAGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCATTTTCCACTGTAAATACATTTTTTTAT--AGCGTTTT-----------ATCATC---------------------------------T---T------------CTTTTCAT-CGCAGGCCTGGCACAAAATTTTGAAAAATTTGAAAGCATCAAGGAGAGCGGCCGA------------
droBia1 scf7180000302334:904100-904428 + GTACACTATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGCCGAGGTGAGTCCCGAAT--------------------------------A----GCAATAATAAC--------------------AAT-GGTTAATAATGG-----------------TACA------A-AACCCTTT-GA------------------AG-------AG-----------AG--C--T----------------CTTTTCGCCCAGCTGTTATGTCACAACAC-----------------------------------------------------------------ACTCTTACTCGCT------------CTCCGGCCGC-C---------CCACTC----------------------TC------C----CGC------TAGC------T----------CGC------T--CCCGCTCT------------CT-----------------------------------------TTCCCTGTTA---ACT-TTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACAT--TTTTAT--AGCGTTTC-----------TTCACC---------------------------------T---A------------ACTTTCCT-CACAGGCCTGGCACAAAATTTTGAGAAGTTCGAAAGCATCAAGGAGAGCGGCCGG------------
droTak1 scf7180000415795:918600-918924 - GTACACAATCAACAAGGGACCCAGCAAAATCGTGGCCAAAACGCGTCGCGGTGAGTGCAAAAT--------------------------------A-------ATAATAAT--------------------AAT-GGTTAATAATGG-----------------CACA------A-AACCCTTC-GA------------------AG-------AG-----------AGAGC--A----------------CTTTTCGCCCAGCTGTTATGTCACAACAT-----------------------------------------------------------------ACTCTTATTCACTCTC--------TCTTCCGTCGCCC---------CCACTC----------------------TC------C------------------------G--------------------------------TCGCCCTCTCT-----------------------------------------TTCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACATT-TTTTAT--AGCGTTTC-----------ATCATC---------------------------------T---T------------CTTTTCAT-CACAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAAAGCGGCCGG------------
droEle1 scf7180000491000:885035-885366 - GTACACAATCAACAAGGGCCCCAGCAAAATCGTTGCTAAAACTCGTCGCGGTGAGTGATTAAT--------------------------------AATA-ATAATAATAAT--------------------AAT-GGTTAATAATGA-----------------TACA----ATA-GACCCTTT-TA------------------AG-------AG-----------AGAGC--G-----------------CTTTTGCCCAGCTGTTATGTCACAACTA--TTCTC-TT---------------------------------------------------------------------------------TTCTGCTGGCC---------TCACTC----------------------TC------C------------------------CGCTCTCTCCTGT------------TCTCT------------CT-----------------------------------------TTATCTGTTA---ACTTTTTGTTT---------TGCCGGC-TTTTCCACTGCAAATAAATG----AATTAC-ATTTTCATCAT-----------T---------------------------------TCTTT---T-----TT-TTTTTCAT-TGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGG------------
droRho1 scf7180000779176:9520-9841 - GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTGCAT-AT--------------------------------A----ATAATAACAAT--------------------AAT-GGTTAATAATGG-----------------TACA----ATA-GACCCTTT--A------------------AG-------AG-----------AG--C--------------------TTTTTGCCCAGCTGTTATGTCACAATTT--TTCTCTTT--------T-------------------------------------------------------------------------TCTGCCGCCC---------CCACTC----------------------TC------C------------------------GGTTCT------C------T--CTTGCTCTC----------TCT-----------------------------------------TGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATAA----TTTTATTAT-ATTTTC-----------ATCATA--AT-----------------------------T---T------------TTTTTCAT-CCCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGG------------
droFic1 scf7180000454065:1809158-1809513 + GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTGCTAAAT--------------------------------A----ATAATAATAAT--------------------A---GGTTAATAATGGTCCGTATTCGCAAAAGGTACA----ATA-AACCCTTTTGA------------------AG-------AG-----------AA--TAAA-----------------CTTTTGCCCAGCTGTTATGTCACAAAAA--------------------------------------------------------------G-TTCTCTTATTCTTTTTC--------TCTCTTGTCGCCC---------CCACTC----------------------TC------T------------------------CGCTCTCGTTCGC------------TCACT------------CT-----------------------------------------CTCTCTGTTA---ACTTTTTGTTT---------TGCCGGCATTTTCCACTGTAAATAAATGGTTTTAT--TAAGTTAA-----------ATAATC---------------------------------T---T------------TTTCTTAT-CGCAGGACTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGA------------
droKik1 scf7180000302686:1257164-1257513 + GTACACCATCAACAAGGGACCCAGCAAAATAGTTGCTAAATCGCGTCGCGGTAAGTAAAG--C--------------------------------AGCA-GCAACAAAAAC---AT-------------GTAAC-ATTTAATTATTC---------G-AGAAGGCACACAAAATAAAACCCTAG--C------------------AG-------AG-----------AG--GCA------------------ACATGCCCCAGCTGTTATGTCACAACATTTGCC---AG--------AGCC---------CCAA---------------------------CGCGCTCTTGGCGC------------------------------------------------------TCTGCTCTCTT------T--------------GGC------CCC--------CAT------T--CTGGCTCT------------CT-----------------------------------------GGCTCTGTTA---GCTTTTTGTTT---------TGCCGGCATTTTCCACTGCATGC-----------TGATAATTTACATCATCTTTTCATCGT----------------------------------T---G-------------------T-TGCAGGCCTGGCGCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCCGA------------
droAna3 scaffold_13337:17362122-17362505 + GTACACAATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGTCGCGGTAAGTATTATTT--------------------------------G----GCATTGAAT-TTGTAA-------------TTAAT-TCGTA------------------AAAAGGTACA----ATA-AACCCTTG-C-------------------AG-------AG-----------AA-----------------------ATGTTGCCCAGCTGTTATGTCACAACATTTGCC----------------------------AGC----------------------------------------------------------------CC----TCT--------CTCTCTCTTTGCCTATGCTCTC----TC--TCTCAATTTTCCTATCACCATTCCCCC--------CATTTCTTATCTAATGCTCT------------CC--GTG---------------AGAGTGGGG-----------GGGCTCTGTTA---ATTTTTTGTTT---------TGCCGGCATTTTCCACTCTATGC-----------TGATAATTTTCATCATC---------CT---------------------------------T---GTTTTCTTGTTTTTTTTTT-CCTGCAGGTCTGGCACAAAATTTTGAAAAATTTGAAAGCATCAAGGAGAGCAGCCGG------------
droBip1 scf7180000396741:663365-663701 + GTACACAATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGTCGCGGTAAGTTTATTGG------C----------TTGGAA-------------------------TTTAT-----------------T-TGGT-------------------AAAAGGTACA----ATA-AACCCTTG-C-------------------AG-------AG-----------AA-----------------------ATGTTGCCCAGCTGTTATGTCACAACATTTGCC-C--C----------------------AAGC-------------------------------------------GC--------TCT-------------------------CT--------GCCTATGCTCT------------TAGTTTTCCTATCGC------TTCTTA--------------TCTAATGCTCT------------CTCCGGG---------------AGAGTGG-------------GGGCTCTGTTA---ATTTTTTGTTT---------TGCCGGCATTTTCCACTCGGTGC-----------TGATAATTTTCATCATC---------CT---------------------------------T---G------------TTTT---T-TGCAGGTCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCAGCCGG------------
dp5 XR_group6:251373-251700 + GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGACGTGGTAAGTACAGTGC------A----------TTTAAA-------------------------TGTAT-------------ATAAA-TGTG-------------------AAAAAGTACA----ATA-AACCCAA----------------------AG-------ACCGGGCACGGAATG--G------------------AATTGTTGCCGAACTGTTATGTCACAACAA--TGCGT-TG--------AGCG---------GCAGC----------------------------------------------------------------GC----ACA--------CTCGCAC------TCATCTCTC--------------------------------------------------------TCTCTCTCTGTCG---------------------------------------------------CTCTTTTTTGAA--AATTGTTT---------TGCCGGCATT-TCAACTGCAAAC-----------TGAC-ATTTGCATCATT--CT------C---------------------------------T---C------------CGTTACTT-GTCAGGTCTGGCCCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCAGCAAG------------
droPer2 scaffold_12:938379-938704 + GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGACGTGGTAAGTACAGTGC------A----------TTTAAA-------------------------TGTAT-------------ATAAA-TGTG-------------------AAAAAGTACA----ATA-AACCCAA----------------------AG-------ACCGGGCACGGAATG--G------------------AATTGTTGCCGAACTGTTATGTCACAACAA--TGCGT-TG--------AGCG---------GCAGC----------------------------------------------------------------GC----ACA--------CTCGCAC------TCATCTCTC----------------------------------------------------------TCTCTCTGTCG---------------------------------------------------CTCTTTTTTGAA--AATTGTTT---------TGCCGGCATT-TCAACTGCAAAC-----------TGAC-ATTTGCATCATT--CT------C---------------------------------T---C------------CGTTACTT-GTCAGGTCTGGCCCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCAGCAAG------------
droWil2 scf2_1100000004949:1816402-1816754 - GTACACTATTAACAAGGGACCGAGCAAAATTGTTGCTAAAACACGTCGAGGTGAGCATATTGCT--AGCA----------TTTTAA-------------------------TTTGTTAAAATTATAAAGAAAA--AAT----------------------TAAATACA----ATA-AGCCCTTG-GA-------GATTCACATAGAG-------AG-----------AG-------------------------------GAAATGTTATGTCACAACAAATGGG-C--A--------AAAG---------AGAA-----------------------CGGGCATGCACGT---------------------TCT----------------------GTCGCAC------TC-------TT------A--------------CGC------TCCCTCT------C------------TCTCGCTGTCT---------------------------------------------------CTCTT-GA---AACATTTGTTT---------TGCCGGCTTTTACGATATCTAAG-----------TGAC-ATTTTCGTCAT-----------C---------------------------------T---GATTTGCCAATTAACTT---T-TCCAGGATTGGCGCAAAATTTTGAAAAATTTGAGAGCATCAAGGAGAGCAGCAAA------------
droVir3 scaffold_13049:20277374-20277753 - dvi_20732 GTACACAGTAAACAAGGGACCTAGCAAAATTGTTGCTAAGACGCGACGCGGTAAGTTACAATT---CGTATTTACATACATTTAAA-------------------------CATA---------------TAAG-GTGT-------------------AAAAAGTACA----ATA-AACCCTAC-GA------------------GA-------AG-----------GG---CG---ACCGCCTGCAAAAAAGTGTT-----GCTGTTATGTCACAACACACGCCGCT-GCTGCCGACAGAA---------GCAGCGCTGCTTAGCTCTCA----TA------------------------------------CGGCTCT-CTTATGCG--------CTC---------------------------G------C--------GC------T----------CGC----------------------------GCT-----------------------------------------CGCTCTT--T---CTCTTTTGTTTTGTACTTTTTGCCGGCAAAT--------------------------------------------------CGAATTTACATTCAAACAATAACAAACAA------------------ACAAA----CACCCACAGGTCTGCCGCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCAAGAAACATGGGAGC
droMoj3 scaffold_6680:7980216-7980589 - GTACACAGTAAACAAGGGACCTAGCAAAATTGTTGCTAAAACTCGTCGCGGTAAGTAAATTGT-------------------------------------ACAAGAAA---TATAT-------------GTAAATGGTGT------------------AAAAAGTACA----ATA-AACCCTAC-GG-------------------G-------AA-----------AG--GCG---ACCGCCTGCAA-AAAGTGTT-----GCTGTTATGTCACAACGT--GCCGCC-GCTGCCGACAGAG---------GCAGCGCTGCTAAACTCTCCCGCAGAGC--------------------GC--------TCT---------CGCAGGCGCT------CGCATAC---------------------------------------GC------T--------------------------TAC------------GCT-----------------------------------------CGCGCTCTTT---GCCTTTTGTTTTGTGCTTTTTGCCGGTAAA------------C--------------------------------------CAAATTTACATTCAAACAATAACAAACAA---------A--------ACGAA----CGCCCACAGGTCTGCCGCAAAACTTTGAAAAGTTCGAGAGCATTAAGGAGAGCGGCAAGAAACAT------
droGri2 scaffold_15110:19889139-19889564 + GTACACGGTAAACAAAGGACCCAGCAAAATTGTTGCTAAGACGCGACGCGGTAAGCAATACACACCCTTATT-------ATTTAAGTGCACGAGCAAAAACAAATAAA---CACAT-------------GTAAT-ATGT-------------------AAAAAGTATA----ATA-AACCCCAA-AGGGGTTGAGGATGGCAAAGGGAGTAAAGGG----AA------CAGC--GCTGCCGCCTGCGA-AAAGTGTT-----GCTGTTATGTCACAACAC--GCCGCT-GCTGCCGACAGAGGCAGCAGAAGCAGCGCTGC---------------------------------------------------TTA----------------------GCCGCGC------TCA-------AA---CAG----CGC------TCGC------TCGCTCTCT--------------T----------TTG---------------------------------------------------CTCTCT-------CTTTTGTTTTGTGTTTATTGCCGGCTAA------------C--------------------------------------CGAATTTACATTCAAACAATAACAAACCACCCACCCA-C------------CCATCCGCCCACAGGTCTGCCTCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCAAG------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTCTCTC--TCTCTCTCT------ATC------TGC--------CGC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGCGG................2011.00100010000000000000
........TCAACAAGGGACCCAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAATTCGAAAGCATCAAG........................2411.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TGC--------CGC------T--CTTGCTCT------------CT-----------------------------------------GGCTCT.......................................................................................................................................................................................................................2411.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TCTTTTCCTTTCTC--------TCT----------------------------------------------C...................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGCATCAAGGAGAGCGGCC..............2311.00101000000000000000
droSec2
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTC------T--------------ATC------TGC--------CGC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTACACTGTAAATACGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCGCAGGCCTGGCACCA...................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGC..................1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGAAAGCATCAAGGAGAGC..................2211.0010001
.TACACAATCAACAAGGGACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
GTACACAATCAACAAGGGACCTAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATAGTAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTCTTTTCCTTTCTC--------TCT----------------------------------------------CTCTCTC--TCTCTATATATCTGCCTC------TGC--------CTC------T--CTTGCTCT------------CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACAGTAAATGCGTA-TTTTAT--AGCTTTCC-----------ATGGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................ACCTAGCAAAATTGTTGCTAAAACGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGAAAGCATCAAGGAGAGCGGCCG.............2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................ATGC-----------------CACA----ATA-GACCCTTT-CA------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGCGGC...............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAAGGAGAGCGGC...............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGCATCAAGGAGAGCGG................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGAAAGCATCAAGGA......................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAATTCGAAAGCATCAAGGAGA....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAATCAACAAGGGACCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAAGGAGAGCGGCC..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TACACAATCAACAAGGGACCTAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACTTTTTGTTT---------TGCCGGCGT...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........TCAACAAGGGACCTAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AGCTTTCC-----------ATGGCA---------------------------------T---G------------T...........................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTT---------TGCCGGCGTT..................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAAGCATCAAGGAGAGCG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......ATCAACAAGGGACCTAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAAGGAGAGCGGCC..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........ACAAGGGACCTAGCAAAATTGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAGCATCAAGGAGAGCGGCC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------------------GGCTCTGTTA---ACTTTTTGTTT---------TGCCGGC.....................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AATCAACAAGGGACCTAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
droEre2
GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TCCATGATAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTC-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTC------A----ACAAATACG------------A----ATA-----------------------------------------------------------------------------------CAAATGCTTT--------------AAGAGAACATATGTAGTTTAAGAGAGGAGCAGAAAATCTCTGGCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAAT-------TTTAT--AGCTTTCC-----------ATTGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAAAGCGGTCGC------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAAAGC..................1811.0010000100
droYak3
GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTCCAAAAT--------------------------------A----TTGATGATAAT--------------------AAT-GGTTAATAATGC-----------------CACA----ATA-GACCCTTT-CA------------------AG-------AG-----------AA-------------------------------CAGCTGTTATGTCACAAAAA--------------------------------------------------------------CATACTC------A----ACAAATACG------------A----ATA-----------------------------------------------------------------------------------CAAATGCTTT--------------AAGAGAGCAC----AGTTTAAGAGAAGAGACGCAAGTCTGCGGCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATGCGTA-TTTTAT--AGCTTTCC-----------ATCGCA---------------------------------T---G------------TTTTCCATCCGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGC------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGCGGC...............2120.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATCAAGGAGAGCGGCC..............2220.50101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGAAAGCATCAAGGA......................2120.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------T---G------------TTTTCCATCCGCAGGCCTG.........................................................2220.50100100000000
..ACACAATCAACAAGGGACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100000000
droEug1
GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTACAAAAT--------------------------------A----ATAATAATAAT-ATTA-------------ATAAT-GGTTAATAATGG-----------------TACA----TTA-AACCCTTTGTA------------------AG-------AG----CA------AAGC--T--------------------CTGCCCAGCTGTTATGTCACAAAA---------------------------------------------------------------CATACTCTTTTTCATTCTC--------TCT-TTGCCGCCC----ACT--------CTCTCCC------TT------------------------------ATC------TTT--------CGC------T--CACGCTCT------------CT---------------------------------------ATAGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCATTTTCCACTGTAAATACATTTTTTTAT--AGCGTTTT-----------ATCATC---------------------------------T---T------------CTTTTCAT-CGCAGGCCTGGCACAAAATTTTGAAAAATTTGAAAGCATCAAGGAGAGCGGCCGA------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTACACTATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGCCGAGGTGAGTCCCGAAT--------------------------------A----GCAATAATAAC--------------------AAT-GGTTAATAATGG-----------------TACA------A-AACCCTTT-GA------------------AG-------AG-----------AG--C--T----------------CTTTTCGCCCAGCTGTTATGTCACAACAC-----------------------------------------------------------------ACTCTTACTCGCT------------CTCCGGCCGC-C---------CCACTC----------------------TC------C----CGC------TAGC------T----------CGC------T--CCCGCTCT------------CT-----------------------------------------TTCCCTGTTA---ACT-TTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACAT--TTTTAT--AGCGTTTC-----------TTCACC---------------------------------T---A------------ACTTTCCT-CACAGGCCTGGCACAAAATTTTGAGAAGTTCGAAAGCATCAAGGAGAGCGGCCGG------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTACACAATCAACAAGGGACCCAGCAAAATCGTGGCCAAAACGCGTCGCGGTGAGTGCAAAAT--------------------------------A-------ATAATAAT--------------------AAT-GGTTAATAATGG-----------------CACA------A-AACCCTTC-GA------------------AG-------AG-----------AGAGC--A----------------CTTTTCGCCCAGCTGTTATGTCACAACAT-----------------------------------------------------------------ACTCTTATTCACTCTC--------TCTTCCGTCGCCC---------CCACTC----------------------TC------C------------------------G--------------------------------TCGCCCTCTCT-----------------------------------------TTCGCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATACATT-TTTTAT--AGCGTTTC-----------ATCATC---------------------------------T---T------------CTTTTCAT-CACAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAAAGCGGCCGG------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTACACAATCAACAAGGGCCCCAGCAAAATCGTTGCTAAAACTCGTCGCGGTGAGTGATTAAT--------------------------------AATA-ATAATAATAAT--------------------AAT-GGTTAATAATGA-----------------TACA----ATA-GACCCTTT-TA------------------AG-------AG-----------AGAGC--G-----------------CTTTTGCCCAGCTGTTATGTCACAACTA--TTCTC-TT---------------------------------------------------------------------------------TTCTGCTGGCC---------TCACTC----------------------TC------C------------------------CGCTCTCTCCTGT------------TCTCT------------CT-----------------------------------------TTATCTGTTA---ACTTTTTGTTT---------TGCCGGC-TTTTCCACTGCAAATAAATG----AATTAC-ATTTTCATCAT-----------T---------------------------------TCTTT---T-----TT-TTTTTCAT-TGCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGG------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTACACAATCAACAAGGGACCCAGCAAAATCGTTGCTAAAACGCGTCGCGGTGAGTGCAT-AT--------------------------------A----ATAATAACAAT--------------------AAT-GGTTAATAATGG-----------------TACA----ATA-GACCCTTT--A------------------AG-------AG-----------AG--C--------------------TTTTTGCCCAGCTGTTATGTCACAATTT--TTCTCTTT--------T-------------------------------------------------------------------------TCTGCCGCCC---------CCACTC----------------------TC------C------------------------GGTTCT------C------T--CTTGCTCTC----------TCT-----------------------------------------TGCTCTGTTA---ACTTTTTGTTT---------TGCCGGCGTTTTCCACTGTAAATAA----TTTTATTAT-ATTTTC-----------ATCATA--AT-----------------------------T---T------------TTTTTCAT-CCCAGGCCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGG------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGTCGCGGTGAGTGCTAAAT--------------------------------A----ATAATAATAAT--------------------A---GGTTAATAATGGTCCGTATTCGCAAAAGGTACA----ATA-AACCCTTTTGA------------------AG-------AG-----------AA--TAAA-----------------CTTTTGCCCAGCTGTTATGTCACAAAAA--------------------------------------------------------------G-TTCTCTTATTCTTTTTC--------TCTCTTGTCGCCC---------CCACTC----------------------TC------T------------------------CGCTCTCGTTCGC------------TCACT------------CT-----------------------------------------CTCTCTGTTA---ACTTTTTGTTT---------TGCCGGCATTTTCCACTGTAAATAAATGGTTTTAT--TAAGTTAA-----------ATAATC---------------------------------T---T------------TTTCTTAT-CGCAGGACTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGA------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTACACCATCAACAAGGGACCCAGCAAAATAGTTGCTAAATCGCGTCGCGGTAAGTAAAG--C--------------------------------AGCA-GCAACAAAAAC---AT-------------GTAAC-ATTTAATTATTC---------G-AGAAGGCACACAAAATAAAACCCTAG--C------------------AG-------AG-----------AG--GCA------------------ACATGCCCCAGCTGTTATGTCACAACATTTGCC---AG--------AGCC---------CCAA---------------------------CGCGCTCTTGGCGC------------------------------------------------------TCTGCTCTCTT------T--------------GGC------CCC--------CAT------T--CTGGCTCT------------CT-----------------------------------------GGCTCTGTTA---GCTTTTTGTTT---------TGCCGGCATTTTCCACTGCATGC-----------TGATAATTTACATCATCTTTTCATCGT----------------------------------T---G-------------------T-TGCAGGCCTGGCGCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCCGA------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTACACAATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGTCGCGGTAAGTATTATTT--------------------------------G----GCATTGAAT-TTGTAA-------------TTAAT-TCGTA------------------AAAAGGTACA----ATA-AACCCTTG-C-------------------AG-------AG-----------AA-----------------------ATGTTGCCCAGCTGTTATGTCACAACATTTGCC----------------------------AGC----------------------------------------------------------------CC----TCT--------CTCTCTCTTTGCCTATGCTCTC----TC--TCTCAATTTTCCTATCACCATTCCCCC--------CATTTCTTATCTAATGCTCT------------CC--GTG---------------AGAGTGGGG-----------GGGCTCTGTTA---ATTTTTTGTTT---------TGCCGGCATTTTCCACTCTATGC-----------TGATAATTTTCATCATC---------CT---------------------------------T---GTTTTCTTGTTTTTTTTTT-CCTGCAGGTCTGGCACAAAATTTTGAAAAATTTGAAAGCATCAAGGAGAGCAGCCGG------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGAAAGCATCAAGGAGAGC..................2312.002010010
............................ATAGTTGCTAAAACGCGTCGCGGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..ACACAATCAACAAGGGACCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGAAAGCATCAAGGAGA....................2111.001010000
GTACACAATCAACAAGGGACCCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
GTACACAATCAACAAGGGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAGCATCAAGGAGAGCAGC...............2511.001010000
..................................GCTAAAACGCGTCGCGGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................A-AACCCTTG-C-------------------AG-------AG-----------AA-----------------------ATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTT-CCTGCAGGTCTGC........................................................2150.201010000
droBip1
GTACACAATCAACAAGGGACCCAGCAAAATAGTTGCTAAAACGCGTCGCGGTAAGTTTATTGG------C----------TTGGAA-------------------------TTTAT-----------------T-TGGT-------------------AAAAGGTACA----ATA-AACCCTTG-C-------------------AG-------AG-----------AA-----------------------ATGTTGCCCAGCTGTTATGTCACAACATTTGCC-C--C----------------------AAGC-------------------------------------------GC--------TCT-------------------------CT--------GCCTATGCTCT------------TAGTTTTCCTATCGC------TTCTTA--------------TCTAATGCTCT------------CTCCGGG---------------AGAGTGG-------------GGGCTCTGTTA---ATTTTTTGTTT---------TGCCGGCATTTTCCACTCGGTGC-----------TGATAATTTTCATCATC---------CT---------------------------------T---G------------TTTT---T-TGCAGGTCTGGCACAAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCAGCCGG------------SizeHit CountTotal NormTotal
No Reads
dp5
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGACGTGGTAAGTACAGTGC------A----------TTTAAA-------------------------TGTAT-------------ATAAA-TGTG-------------------AAAAAGTACA----ATA-AACCCAA----------------------AG-------ACCGGGCACGGAATG--G------------------AATTGTTGCCGAACTGTTATGTCACAACAA--TGCGT-TG--------AGCG---------GCAGC----------------------------------------------------------------GC----ACA--------CTCGCAC------TCATCTCTC--------------------------------------------------------TCTCTCTCTGTCG---------------------------------------------------CTCTTTTTTGAA--AATTGTTT---------TGCCGGCATT-TCAACTGCAAAC-----------TGAC-ATTTGCATCATT--CT------C---------------------------------T---C------------CGTTACTT-GTCAGGTCTGGCCCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCAGCAAG------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................GACGTGGTAAGTACAGTGC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030300000000
GTACACAATCAACAAGGGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............AGGGACCCAGCAAAATTGTTGCTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
............................................................................................................................................................................................................................................................................................CGT-TG--------AGCG---------GCAGC----------------------------------------------------------------GC----ACA--------C........................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTC--------------------------------------------------------TCTCTCT....................................................................................................................................................................................................................................................................................15200.0510000000010
droPer2
GTACACAATCAACAAGGGACCCAGCAAAATTGTTGCTAAAACGCGACGTGGTAAGTACAGTGC------A----------TTTAAA-------------------------TGTAT-------------ATAAA-TGTG-------------------AAAAAGTACA----ATA-AACCCAA----------------------AG-------ACCGGGCACGGAATG--G------------------AATTGTTGCCGAACTGTTATGTCACAACAA--TGCGT-TG--------AGCG---------GCAGC----------------------------------------------------------------GC----ACA--------CTCGCAC------TCATCTCTC----------------------------------------------------------TCTCTCTGTCG---------------------------------------------------CTCTTTTTTGAA--AATTGTTT---------TGCCGGCATT-TCAACTGCAAAC-----------TGAC-ATTTGCATCATT--CT------C---------------------------------T---C------------CGTTACTT-GTCAGGTCTGGCCCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCAGCAAG------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................TGTTGCTAAAACGCGACGTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droWil2
GTACACTATTAACAAGGGACCGAGCAAAATTGTTGCTAAAACACGTCGAGGTGAGCATATTGCT--AGCA----------TTTTAA-------------------------TTTGTTAAAATTATAAAGAAAA--AAT----------------------TAAATACA----ATA-AGCCCTTG-GA-------GATTCACATAGAG-------AG-----------AG-------------------------------GAAATGTTATGTCACAACAAATGGG-C--A--------AAAG---------AGAA-----------------------CGGGCATGCACGT---------------------TCT----------------------GTCGCAC------TC-------TT------A--------------CGC------TCCCTCT------C------------TCTCGCTGTCT---------------------------------------------------CTCTT-GA---AACATTTGTTT---------TGCCGGCTTTTACGATATCTAAG-----------TGAC-ATTTTCGTCAT-----------C---------------------------------T---GATTTGCCAATTAACTT---T-TCCAGGATTGGCGCAAAATTTTGAAAAATTTGAGAGCATCAAGGAGAGCAGCAAA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........AACAAGGGACCGAGCAAAATTGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGAAAAATTTGAGAGC..............................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATCAAGGAGAGCA.................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGAGCATCAAGGAGA....................2211.00100010
droVir3
GTACACAGTAAACAAGGGACCTAGCAAAATTGTTGCTAAGACGCGACGCGGTAAGTTACAATT---CGTATTTACATACATTTAAA-------------------------CATA---------------TAAG-GTGT-------------------AAAAAGTACA----ATA-AACCCTAC-GA------------------GA-------AG-----------GG---CG---ACCGCCTGCAAAAAAGTGTT-----GCTGTTATGTCACAACACACGCCGCT-GCTGCCGACAGAA---------GCAGCGCTGCTTAGCTCTCA----TA------------------------------------CGGCTCT-CTTATGCG--------CTC---------------------------G------C--------GC------T----------CGC----------------------------GCT-----------------------------------------CGCTCTT--T---CTCTTTTGTTTTGTACTTTTTGCCGGCAAAT--------------------------------------------------CGAATTTACATTCAAACAATAACAAACAA------------------ACAAA----CACCCACAGGTCTGCCGCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCAAGAAACATGGGAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................CA----ATA-AACCCTAC-GA------------------GA-------AG-----------GG---CG---ACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAAGGAGAGCGGCAAGA...........2111.001001000000000000000000000000000000000000000000000000000000000000
.....................TAGCAAAATTGTTGCTAAGACGCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAAGGAGAGCGGCAAGA...........2211.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAGAGCATCAAGGAGAGCGGC...............2611.001000000000000000000000000000000000000010000000000000000000000000
.........................AAAATTGTTGCTAAGACGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGAAAAGTTCGAGAGC..............................2311.001000000000100000000000000000000000000000000000000000000000000000
.......GTAAACAAGGGACCTAGCAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGAGCATCAAGGAGAGC..................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
GTACACAGTAAACAAGGGACCTAGCAAAATTGTTGCTAAAACTCGTCGCGGTAAGTAAATTGT-------------------------------------ACAAGAAA---TATAT-------------GTAAATGGTGT------------------AAAAAGTACA----ATA-AACCCTAC-GG-------------------G-------AA-----------AG--GCG---ACCGCCTGCAA-AAAGTGTT-----GCTGTTATGTCACAACGT--GCCGCC-GCTGCCGACAGAG---------GCAGCGCTGCTAAACTCTCCCGCAGAGC--------------------GC--------TCT---------CGCAGGCGCT------CGCATAC---------------------------------------GC------T--------------------------TAC------------GCT-----------------------------------------CGCGCTCTTT---GCCTTTTGTTTTGTGCTTTTTGCCGGTAAA------------C--------------------------------------CAAATTTACATTCAAACAATAACAAACAA---------A--------ACGAA----CGCCCACAGGTCTGCCGCAAAACTTTGAAAAGTTCGAGAGCATTAAGGAGAGCGGCAAGAAACAT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTAAGGAGAGCGGCA..............1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAGAGCATTAAGGAGAGCGG................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAGAGCATTAAGGAGAGC..................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGGAGAGCGGCAAGAAA.........2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAGTTCGAGAGCATTAAGGA......................2511.001100000
droGri2
GTACACGGTAAACAAAGGACCCAGCAAAATTGTTGCTAAGACGCGACGCGGTAAGCAATACACACCCTTATT-------ATTTAAGTGCACGAGCAAAAACAAATAAA---CACAT-------------GTAAT-ATGT-------------------AAAAAGTATA----ATA-AACCCCAA-AGGGGTTGAGGATGGCAAAGGGAGTAAAGGG----AA------CAGC--GCTGCCGCCTGCGA-AAAGTGTT-----GCTGTTATGTCACAACAC--GCCGCT-GCTGCCGACAGAGGCAGCAGAAGCAGCGCTGC---------------------------------------------------TTA----------------------GCCGCGC------TCA-------AA---CAG----CGC------TCGC------TCGCTCTCT--------------T----------TTG---------------------------------------------------CTCTCT-------CTTTTGTTTTGTGTTTATTGCCGGCTAA------------C--------------------------------------CGAATTTACATTCAAACAATAACAAACCACCCACCCA-C------------CCATCCGCCCACAGGTCTGCCTCAAAACTTTGAAAAGTTCGAGAGCATCAAGGAGAGCGGCAAG------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 03:01 PM