ID:dsi_21743 |
Coordinate:3l:7984753-7985043 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -12.71 | -12.41 | -12.21 |
 |
 |
 |
exon [3l_7984571_7984752_+]; CDS [3l_7984571_7984752_+]; CDS [3l_7985044_7985544_+]; exon [3l_7985044_7986157_+]; intron [3l_7984753_7985043_+]
No Repeatable elements found
| ##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACGAGGGAAAGCGTGTCTCCGAGACGCTGAGCTATGCGTATGCCAAGCAGGTAATACCTTTAACAATATATAAACATTTTTGGAGAGCTACATTCCTAAGCCAGATCGAAAAAAAAAACATTAAACTAGCTGAGATCCAGAAATGTGGCAGATTTTTCCTGTTTCGATAGCTAGTTGAGCATTAAATGTTCTCAATTGGAATGCCATTAATTGATGTTCCGCTCGGTTGGCTGACGCGAGATAAGATTTCCAAGCACGAGCACTGACCACCACATTTTTTGATCTTGGCCAGCTATCAGGCAGTCAAATTAATTGCTCTCTAAATGTATCTATATCAACAGGAGAAGGTGCAAGTGCGAGTGGCGCGCATCTTTAACACTTATGGACCCAG *********************************************************************....(((((((((((.(((((....................................)))))....)))))))))))......*********************************************************************************************************************************************************************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
M023 head |
O001 Testis |
O002 Head |
SRR902008 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................................GAGATAAGATTTCACAGGAC...................................................................................................................................... | 20 | 3 | 2 | 1.50 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................GATCCAGAAATGTGGCAGA............................................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................AACATTAAACTAGCTGAGATC.............................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................TAAGTCAGATCGTAAAAAAAAA................................................................................................................................................................................................................................................................................. | 22 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................................................................................................................................GCATCTTTAACACTTATGGACC... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................ATAAACATTTTTGGAGAGCTA............................................................................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................GTTGGCTGACGCGAGATAAG.................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAACACTTATGGACCC.. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................................................................AGAAGGTGCAAGTGCGA................................ | 17 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................CGAGATAAGATTTCACAGGAC...................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................CTCGAGATAAGATTT.............................................................................................................................................. | 15 | 1 | 11 | 0.18 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................AAGACAGATCAAAAAAAAAACCA............................................................................................................................................................................................................................................................................... | 23 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................AGATAAGATTTCACAGGACG..................................................................................................................................... | 20 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................CTCAAGATAAGATTTCCAGG......................................................................................................................................... | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................................................................................................................................................................................TAATTGCTCTCTATCTGTCTC............................................................. | 21 | 3 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................TCAGATCGAAAAAAAAAA................................................................................................................................................................................................................................................................................. | 18 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................TGCCAGTTCGAAAAAAAAAA................................................................................................................................................................................................................................................................................. | 20 | 2 | 18 | 0.11 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 |
| ......................................................................................................................................................................................................................................CTGTCGCGAGCTAAGCTTT.............................................................................................................................................. | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................TGCAGATCGAAAAAAAAAA................................................................................................................................................................................................................................................................................. | 19 | 2 | 20 | 0.10 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............................................................................................................................AGCTGTGATCCGGAGATGT..................................................................................................................................................................................................................................................... | 19 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...AGCGAAAGCGTGTCTCA................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 2 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................CGCGAGATGAGTTTTCTAA.......................................................................................................................................... | 19 | 3 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................TACTAAGCCAGGTCTAAAAA...................................................................................................................................................................................................................................................................................... | 20 | 3 | 17 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................TGGCCAGATCGAAAAAAA.................................................................................................................................................................................................................................................................................... | 18 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................................................................................................................................................CTCGAGATAAGATTTCA............................................................................................................................................ | 17 | 2 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................AGCTTTGATCCAGAGATGT..................................................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................TGCCAGATCGAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................. | 23 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................................................................................GATAAGATTTCCCAGGA....................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................TCTGAGACGCTGAGCGCT.................................................................................................................................................................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
TGCTCCCTTTCGCACAGAGGCTCTGCGACTCGATACGCATACGGTTCGTCCATTATGGAAATTGTTATATATTTGTAAAAACCTCTCGATGTAAGGATTCGGTCTAGCTTTTTTTTTTGTAATTTGATCGACTCTAGGTCTTTACACCGTCTAAAAAGGACAAAGCTATCGATCAACTCGTAATTTACAAGAGTTAACCTTACGGTAATTAACTACAAGGCGAGCCAACCGACTGCGCTCTATTCTAAAGGTTCGTGCTCGTGACTGGTGGTGTAAAAAACTAGAACCGGTCGATAGTCCGTCAGTTTAATTAACGAGAGATTTACATAGATATAGTTGTCCTCTTCCACGTTCACGCTCACCGCGCGTAGAAATTGTGAATACCTGGGTC
***********************************************************************************************************************************************************************************************************************************************....(((((((((((.(((((....................................)))))....)))))))))))......********************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
M024 male body |
M023 head |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................TCGATGTAAGGATAC................................................................................................................................................................................................................................................................................................... | 15 | 1 | 7 | 1.29 | 9 | 0 | 0 | 0 | 0 | 5 | 0 | 4 | 0 |
| ...................................................................................................................................................................AGCTATCGATCAACTCGTA................................................................................................................................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................GATCGACTCTAGGTCTTTACACC................................................................................................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................TAAGGATTCGGTCTAGCTTTT....................................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................GTCCGCCAGTTTAATTA.............................................................................. | 17 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................TAGGTCTAACTATTTTTTTTGT............................................................................................................................................................................................................................................................................... | 22 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCACGCTCACCGCGCC....................... | 16 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCACGCTCACCGCGCCCAGCA.................. | 21 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................................................................................................ACGCTCACCGCGCCTAG.................... | 17 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................CCCTCGATGTAAGGA...................................................................................................................................................................................................................................................................................................... | 15 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................AGTCGAAATTTACTAGAGT..................................................................................................................................................................................................... | 19 | 3 | 20 | 0.30 | 6 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................CCTTTCGATGTAAGGATAC................................................................................................................................................................................................................................................................................................... | 19 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................TCCTTTCGATGTAAGGATAC................................................................................................................................................................................................................................................................................................... | 20 | 3 | 8 | 0.25 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................CTCGATGTAAGGAGT.................................................................................................................................................................................................................................................................................................... | 15 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCATGCTCACCGCGCCCAG.................... | 19 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................TCCGCTCGATGTAAGGAT..................................................................................................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................TCAACTCTAGGTCTTCAC...................................................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................CCGTTCGATGTAAGGAT..................................................................................................................................................................................................................................................................................................... | 17 | 2 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................................................................................................ACGCTCACCGCGCCCAG.................... | 17 | 2 | 14 | 0.14 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................TCCGCTCGATGTAAGGATAC................................................................................................................................................................................................................................................................................................... | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCACGCTCACCGCGCCCAGC................... | 20 | 3 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................CGTTCGATGTAAGGAT..................................................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................ACCGTTCGATGTAAGGATAC................................................................................................................................................................................................................................................................................................... | 20 | 3 | 11 | 0.09 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................ACCTCTCGATGTAGGGG...................................................................................................................................................................................................................................................................................................... | 17 | 2 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................................................................................................................................................GTTAAACTTACGGTAAT...................................................................................................................................................................................... | 17 | 1 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................................................................................................................................................................................AAAAAAACTAGGACTGGTCG.................................................................................................. | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................TCCGTTCGATGTAAGGATT.................................................................................................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................CTAGGTCTTTGAACCGT................................................................................................................................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCACGCTCACCGCGCCC...................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................TCGATGTAAGGGTTCCG................................................................................................................................................................................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTGTGAATAC....... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................................................................................................ACGCTCACCGCGCCCAGCA.................. | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................AAAAAAACTAGAGCCGG..................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................................TCACCCTCACCGCGC........................ | 15 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................GTCCGCCAGTTGAATTA.............................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:34 AM