ID:

dsi_21742

 Coordinate:

3l:15747813-15747962 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15747963_15748233_+]; exon [3l_15747963_15748457_+]; intron [3l_15747556_15747962_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCGGGGTTTTGTTATCATCCAGCAGTCATAATAACCACCAGTCACAAGATATCTTTAGCGTTCGGAATTCTAATAGACTTGTCATAAAAATGACCGATCTTATAACTATCTTAGGAACACACCTATTCATCAAATTATTGCCCAGACTATTTACTAATTAGAAATTTTATTTTCTTATAAACTTCCGAATTTTTCCAGGTTTTCAATTTTCCAGCACCTGGGCAACGGAGTTCTCCGTTCCGAATCCG
**************************************************...........((((((((.......(((...(((((....)))))...)))...........((((......))))..................................(((((......))))).......))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.................................................................................................................................................................................................................TTTCCAGCACCTGGGCAACGGAGTTC............... 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................CTCCGTTCCGAATCGG 16 1 5 0.20 1 0 0 1 0 0
............................................................................................................................................................................................................TCAATATTCCGGCACCTGGA.......................... 20 3 8 0.13 1 0 0 0 1 0
...............................................................................................................................................................................................................ATTTTCGAGCGCCTGGACAAC...................... 21 3 9 0.11 1 0 1 0 0 0
..................................................................GAATTCGAGTAGGCTTGTC..................................................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0
...........................................TTACAAGATATCTTTGGC............................................................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 1

Anti-sense strand reads

TTGGCCCCAAAACAATAGTAGGTCGTCAGTATTATTGGTGGTCAGTGTTCTATAGAAATCGCAAGCCTTAAGATTATCTGAACAGTATTTTTACTGGCTAGAATATTGATAGAATCCTTGTGTGGATAAGTAGTTTAATAACGGGTCTGATAAATGATTAATCTTTAAAATAAAAGAATATTTGAAGGCTTAAAAAGGTCCAAAAGTTAAAAGGTCGTGGACCCGTTGCCTCAAGAGGCAAGGCTTAGGC
**************************************************...........((((((((.......(((...(((((....)))))...)))...........((((......))))..................................(((((......))))).......))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR902009
testis
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.........................................................ATCGCAAGGCTCAAGATG............................................................................................................................................................................... 18 3 20 5.65 113 69 0 42 0 2 0 0 0 0 0
.......................................................AAATCGCAAGCCTTAAGATTATC............................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTGAAGGCTTAAAAAGGTCC................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................TATAGAAATCGCAAGCCTTAAGATTAT............................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................ATAACGGGTCTGATAAATG.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGGGTCTGATAAATGATT........................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................TTTTTGGTGGTCAGTGTTA........................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................GAAATCGCAAGCCTTAAGATTATC............................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................GTCAGTTTGATTGGTGGTC............................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.........................................................ATCGCAAGGCTTAAGATG............................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGGCCGTGGACCCG......................... 15 1 14 0.29 4 0 0 0 0 0 0 0 3 1 0
..................................................................................................................................................................................................CAGGTCGAAAACTTAAAAGGTCG................................. 23 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
..........................................................TCGCAAGGCTTAAGATTC.............................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTAGAAGGTCGTGGCCC........................... 17 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0
................................TATTGGTGGTCATCGGTCTA...................................................................................................................................................................................................... 20 3 14 0.14 2 0 0 0 2 0 0 0 0 0 0
........................................GTCAGTGTTCTGTAG................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................GATACAAACCTTGTGTGGCT........................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................GGACCCGTTGCCTCA................. 15 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0
........................GTCAGTTTGATTGGTGG................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................TTGCCTCGAGAGGTAAG........ 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0
........................GTCAGTTTTATGGGTGG................................................................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................AAATTAGAAGGTCGTGGCC............................ 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................TTAGAAGGTCGTGGCC............................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TAGAAGGTCGTGGCCC........................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................ATCGCAAGGCTCAAGATC............................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................CAGTATTATTGCTGAGCA.............................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 08:26 PM