ID:

dsi_21741

 Coordinate:

x:13360657-13360883 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCTGACGCAGCGATTCAGCGTTGGCAGCAGCGGTTTACCCCGGGACGAGGTAAGTACTGGAGGAGCATCTTTTAAATTGCCTCGATGATGTTCATCAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTTTATTGGGAACGTAAAATGTGCTTGCTTCCGTGCTTTGTTTGTGTCTTCGTCCTCGTGTTGTTCCCATGTTGTCATCGTTTGTGGCTCCAGTGCAGCCGGCAACTGATCAAATACGCCTGGCCTATCCCACAGCTGCCGCGGCGCAAGCGGCCGAATCTTCTGACCGGAATACACCGGCGTAG
**************************************************....((((((((((((((((.................)))))))..((((...((((.((....)).)))).....))))....(((((((((.....((((((((....(((.....((......))....................)))..)))))))).....))))).))))...))))))))).((((((..............))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
...............TCAGCGGTGGCAGCAGC....................................................................................................................................................................................................................................................................................................... 17 1 13 13.15 171 171 0 0 0 0 0
...............TCAGCGGTGGCAGCA......................................................................................................................................................................................................................................................................................................... 15 1 20 3.85 77 77 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GAATCTTCTGACCGG............... 15 0 1 2.00 2 0 2 0 0 0 0
........................................................................................................................................................................................................CGTTGTTCCCATATTGTC............................................................................................................. 18 2 1 2.00 2 2 0 0 0 0 0
...............TCAGCGGTGGCAGCAGCGG..................................................................................................................................................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0
...............TCAGCGGTGGCAGCAGCGGTC................................................................................................................................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................GTCCTCGTGTTGCACCCCT................................................................................................................... 19 3 8 1.88 15 0 6 8 0 1 0
..........GCGATTCAGCGTTGGCA............................................................................................................................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0
......................TGGCAGCAGCGGTTTACCCCGGGA......................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
...............TCAGCGTTGGCAGCAG........................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 1 0 0 0 0 0
............GATTCAGCGTTGGCA............................................................................................................................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0
...............TCAGCGGTGGCAGCAGCGGTCAA................................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...............TCAGCGGTGGCAGCAGCG...................................................................................................................................................................................................................................................................................................... 18 1 3 1.00 3 3 0 0 0 0 0
................................................................................................................................................................................................AGTCCTCGTGTTGTACCCCT................................................................................................................... 20 3 3 0.67 2 0 1 0 1 0 0
...............TCAGCGGTGGCAGCAG........................................................................................................................................................................................................................................................................................................ 16 1 20 0.50 10 10 0 0 0 0 0
...............TCAGCGTTGGCAGCA......................................................................................................................................................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0
.............................................ACGAGGTAGGTACTGG.......................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0
...............TCAGCGTTGGCAGCAGCCA..................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................TCCTCGTGTTGTACCCCT................................................................................................................... 18 2 5 0.40 2 0 1 0 1 0 0
........................................................................................................................................................................GCTTCCGGGCTTTGT................................................................................................................................................ 15 1 9 0.33 3 0 3 0 0 0 0
.....................................................................................ACGATGTTCATCAGTCTGAT.............................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 1
........................................................................................................................................................................GCTTCCGTGCTTTGA................................................................................................................................................ 15 1 5 0.20 1 0 1 0 0 0 0
..................................................CTAAGTACTGGAGGA...................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0
...................................................................................................................................................................................................CCTCGTGTTGTACCCCT................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0
...............TCAGCGGTGGCAGCAGCGGC.................................................................................................................................................................................................................................................................................................... 20 2 20 0.10 2 2 0 0 0 0 0
...................................................................................................................................................................................................CCTCGTGTTGCTCCCCT................................................................................................................... 17 2 14 0.07 1 0 0 1 0 0 0
..................................................................................................................GAGTGGTCTAAGGCTGCAG.................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 1
...............TCAGCGGTGGCAGCAGAGGG.................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................CTCGTGTTGTACCCCT................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................AGCAGCCGCGGCGCA..................................... 15 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AGGACTGCGTCGCTAAGTCGCAACCGTCGTCGCCAAATGGGGCCCTGCTCCATTCATGACCTCCTCGTAGAAAATTTAACGGAGCTACTACAAGTAGTCACAGTAACCAGTTATCTCATCAGATTTCGACATCAGTTTCCACCAAATAACCCTTGCATTTTACACGAACGAAGGCACGAAACAAACACAGAAGCAGGAGCACAACAAGGGTACAACAGTAGCAAACACCGAGGTCACGTCGGCCGTTGACTAGTTTATGCGGACCGGATAGGGTGTCGACGGCGCCGCGTTCGCCGGCTTAGAAGACTGGCCTTATGTGGCCGCATC
**************************************************....((((((((((((((((.................)))))))..((((...((((.((....)).)))).....))))....(((((((((.....((((((((....(((.....((......))....................)))..)))))))).....))))).))))...))))))))).((((((..............))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
...........................CGTCGCCAAATGGGCCC........................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................CTTGGACTAGTTTATGCGGAA............................................................... 21 3 1 1.00 1 0 0 1 0 0
............................GTCGCCAAATGGGGC............................................................................................................................................................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0
..........................TCGTCGCCAAATGGGCCT........................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................................................AGGTCGGCCGTTGATTAGTTT....................................................................... 21 2 2 0.50 1 0 1 0 0 0
...............AGTCGCCACCGTCGTCG....................................................................................................................................................................................................................................................................................................... 17 1 13 0.46 6 6 0 0 0 0
.........................GTTGTCGCCAAATGGGCC............................................................................................................................................................................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................................................GGTCGGCCGTTGATTAGTTT....................................................................... 20 2 3 0.33 1 0 1 0 0 0
........................CCAAGTCGCCAAATGGGGC............................................................................................................................................................................................................................................................................................ 19 3 8 0.25 2 0 0 0 2 0
.............TGAGTCGCCACCGTCGTCG....................................................................................................................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................................................................................CGGCCGTTGACTATCTTA...................................................................... 18 2 6 0.17 1 0 1 0 0 0
...............AGTCGCCACCGTCGTC........................................................................................................................................................................................................................................................................................................ 16 1 20 0.15 3 2 0 0 0 1
...............................................................................................................................................................................................................................................CGGCCGTTGACTATCTTAAG.................................................................... 20 3 7 0.14 1 0 1 0 0 0
...........................GGTCGCCAAATGGGCCC........................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0
...................................................................................................................................................................................................GGAGCATAACAAGGAT.................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
................................................................................................................................ACAGCAGTTCCCACCA....................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................................................TCTCAACAAGGGTACAA................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0
............................................................................................AGTAGTCACAGTCAC............................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:13360607-13360933 + dsi_21741 TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTACTGG--A--------------------------------------------------------------------------------------------------------------------------------GGAGCAT---CTTTTAAATTGCC-TCGATGATGTTCA-------------------------------------------------------------------------------------------------------TCAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTT--------------TATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGT--------------------------------------T---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-TTGTTCCCATGTTGTCATCGTTTGTGG--------CTC-CAGTGCAG-CCGGCAACTGATC-------------AAATACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------
droSec2 scaffold_20:753637-754009 + dse_1049 TCCTGACTCAACGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTACTGTGAAGA-------------------------------------------------------------------------TTGTTATGT-----------TGGATGTGCGTGCCCATGTGACACTGAACTTTCGGAGCAT---CTTTTAAATTGCC-TCGATGATGTTCA-------------------------------------------------------------------------------------------------------TCAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTT--------------TATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGT--------------------------------------T---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-CTGTTCCCATGTTGTCATCGTTTGTGG--------CTC-CAGTGCAG-CTGGCAACTGATC-------------AAATACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------
dm3 chrX:14150741-14151071 + TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTATTGGGAAGA-------------------------------------------------------------------------TTGTTATGT-----------TTGATGT----GC------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCATAGTTCAGTGTCATTGGTCAATAGAGTAGTCAAAAGCTGTAGT----------T--------------TATTGGGAACGTCAAATGTGCCATAGTTGCTTGCTTTCGTGCTTCGTC------------------------CA--------TGTT---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-GTGTTCTCGTGTTGTCTTCGCTTGTGG--------CTC-GAGTGCAG-CCGGCAACTGACC-------------AAATACGCCTAGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------
droEre2 scaffold_4690:12780611-12780984 - TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTGCCCCGGGACGAGGTAAGTGCTGCGGAGA-G--------------------------TGTGTCTAGAGTAGATTTGTGCTTTTCAATGT--------TTTGGTTGTTATGT-----------TGGATGT----GTCCAAGGGACACTGAACCTGCGGCGCAT---ATTTTATGTGCCCGCCGGTAAG----------------------------------------------------------------------------------------------------------GTTCAGTGTCCTTGGTCAATAGACTTGTCAAATGCTGTAGA------------------------------------------------CAGTTGCTTGCTTCCGTGCTTCGTC------------------------CA--------TTTGTC----------GT--------------------CTTCGTCCTCATGTT-----------------------------------------------------------------GTCC-----------TCATGTGTGG--------CTC-GAGTGCAC-TCGGCAACTGACC-------------AAAAACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCTCAAGCGGC------CGAATCTTTTGACCGGA---ATACACCGCCGTAA------
droYak3 X:8403497-8403895 + dya_146 TCCTGACGCAGCGTTTCAGCGTTGGCAGCAG------------------CG---------------GTTTGCCCCGGGACGAGGTACGTACTCCGGAG-----------------------------TTGGTCAAGAGTAGATTTGTGCTTTTCAATGT--------TTTGGTTGTCATGT-----------TGTATGT----GCCCATGTGACACTGAACTTTCGAGGCATTGTTTTTTATAT--CC-TCGATAAC----------------------------------------------------------------------------------------------------------GTTCAGTGTCATTGGT--------------------------------------------------------GAACGTTAAATGTGCCTTAGTTGCTTGCTTCCGTACTTCGTC------------------------CA--------TGTTCC----------GT--------------------CTTCGTCCATGTTCCGTACTTCGTCCAT---------GTTG---CG---TCGT--CGTCCTT------------GTG-CTGTCC-----------TCGTGTGTGG--------CTC-GAGTGCAG-CCGGCAACTGACC-------------AATTACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGCCGTAA------
droEug1 scf7180000409008:561294-561700 + TCTTGACGCAACGTTTTAGCGTTGGCAGTAG------------------TG---------------GCCTGCCCCGGGACGAGGTAAGTCCGGATTAG-----------------------------TCTGT--CGTGTAGATTTGTGCTTTTCAATGT--------TTTG---------------------------------TTTATGTAAAAGTGAACTTTCGAGAAAG---------AAT--TC-TCGGTACTGGTCGTAGTGGTCATTGTCATCCAATTTTGATTTAATAGATAGTGCTAG----------------------------GAACTG-CAACTTATGTGCT-TCATATTAGCATAGTGTCATAGGTCT--------------------------------------------------TT-----------GTGTGTCGTAGTTACTTGCCTTCGGGCTTTGTC------------------------CA--------TGTCTT----------GT--------------------CTTTGTCCTCGTGGT-----------------------------------------------------------------GTCC-----------TCGTTTGTGG--------CTC-ACCATTAGCCCGGCAACTGATC-------------GAATATGTCTGAC-------TTAT---CCAACAGCTGCCGC---GAAGTACGCGGC------CGAATCTTATTACTGGT---ATGCAGCGCCGTAG------
droBia1 scf7180000302041:1209374-1209585 + TAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGTCCAAAGCTCTAGT----------TTAGTATCGTAGGGCATTC--------GAAC---------------TGCCCCAGTACTTAGTC-------CATTTGT-C--------CA--------CGTGTC----------GTCCTCGTGCTTGTCGTGTTGTCGTCGCCC-----TC-----------------------------------------------------------GT------CC------------TTTGTGTGG--------CTC-CACTGCCG-CCGGCAACTGA----------------------CCTGGC-------CTCT---CCCTCAGCTGCCGC---ATCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACAGCGCCGTAG------
droTak1 scf7180000415169:738361-738484 - GTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA------------------------CT--------CGTGTT----------GT--------------------CTTCGTCCTGGT--------------------------------------CGT--CATC---------------------------------------CTAGTGA--------CT------------TGACCTCTGA----------------------CCTGAG-------CTCT---CCCACAGCTGCCGC---AACGCAAGCGGT------CGACCCTTCTGACCGGA---ATACAGCGACGTAG------
droEle1 scf7180000491272:1674748-1674963 + TAGC---CCATTGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAGTGTCATGGGTAA--------------------------------------------------TTGAATATGTAAAGTGTAGCCTAGCTGC------------TTTGT--------------------------------------C---------CTCGTCATCGTCATCGT--CATCGTCTTCGTCCATGTGTT-----------------------------------------------------------------GTCC------------TTTGTGTGG--------TTC-CAGTGCAG-CCGGCCACTGACC-------------GAATACGCCTGGC-------CTTT---CCCACAGCTGCCGC---ATCGCAAGCGGT------CGAATCTACTGGCCGGG---ATACAGCGTCGCAA------
droRho1 scf7180000779835:8473-8629 - TAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGTGAAGTGTGCCATAGCTG------------CTTTGTC------------------------CA--------AGTATT----------AT--------------------TTTCGTCCATGTGTT-----------------------------------------------------------------GTCC------------TTTGTGTGG--------CTC-CACTG----CCGGCAACTGA----------------------CCTGGC-------CTTT---TCCACAGCTGCCCC---ATCGCAAGCGGT------CGAATCTACTGACTGGT---ATACAGCGTCGCAA------
droFic1 scf7180000454073:840657-840977 - TTCTTACGCAGCGTTTTAGCGTTGGCAGCAG------------------CG---------------GTTTGCCACGGGACGAGGTAAGTAAAAAGAAA-TCAATG--------------------------T--T-GGTAGATATGTCATTTTCCATGT--------TTTGGTTG---TGT-----------TCAATGT----GCTTTTGTTACAAAGAAAT-------------------------------------------------------------------------------GTAAG-------------------------------CTAG-TTAGTGGGC--TATTGCTTTCGTTCAGT---------------------------------------------------------------------GTAAAGTGTGCCTCAGCTG------------------C------------------------CA--------CGTCTC----------GT--------------------CCTTGTCCACTTCAT-----------------------------------------------------------------GTTC------------TTTGTGTGGCTGTGTAGCTC----TGTAG-CCGGCAATTGA----------------------CTTGGCA------ATCT---CCCACAGCTGCCGC---GTCGTCAGCGGC------CGAATCTTCTGACCGGC---GTGCACCGCCGCAT------
droKik1 scf7180000302476:2000095-2000249 + TGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------T---------GTTAT--------------TGTCGTCCTTGTCAATGT--------------------------------------------------------------------GCGC-----------TTCTATGTGG--------CTC--AGTGCAG-CCGGAAGTTAACAACAATCGAATACCAAATAC-CCTGGC-------ATCT---CCCACAGCTGCCTC---AACGCAAGCGGT------CGACTATATTGACCAGG---TTGCAGCGCCGCAG------
droAna3 scaffold_13248:1856528-1856875 + dan_1527 TCCTATCCTCGCGCTTCAGCGTGGGCAGCAG------------------CG---------------GCCTGCCACGGGACGAGGTAAGGATCCC--AG-----------------------------CTTGT--GGAGTAGATTTGAATTT--GTGTT-TTTGGCTTTTTGGTTGT-----AGAATGCTTGT-GTCCAT----GTCCATGTGGCACTGGAAG-----------------------------------------AA--GGTATTGTTCC-GA----------ATTAGAAAGGGTCAG-------------------------------CTA--TACCTATGC--CAGTGCCATCGTCCAGTGTCTTAGGTGAG-----------------------------------------------------------------------------------CTGTGTTTCGTC------------------------CA--------TGTC-----------------------------------------CGTTCTCCGTCCTCCGTCCCA----------------------------------------------GTC-GT-----------------------GT--------C--------TAA-CAAGTCATTACTG-------------AGACA---GCATC-------CCAT---CCAACAGCTGCCGC---GTCGCAAGCGGC------CGAATCTGCTGACCGGA---ATGCAGCGCCGTCG------
droBip1 scf7180000395544:5172-5591 - TCCTGTCCTCGCGTTTCAGCGTCGGCAGCAG------------------CG---------------GCCTGCCACGGGACGAGGTAAGTCCAGGGT----------CCTTCCGG-GGGCTGCTCTGGTTTGT--GTAGTAGACTTGTGAGTATGTGTTTTTTGGCTATTTGGTTGT-----AGAATGCTT-------AT----GTCCAACTGGCACTGGACGG----------------------------------------AA--GGTATAGTCAC-GA----------ATTAGAGCAGGACAGATATATACAATGGTCTCGCTCTAATTCGGTACTA--TACCAATG-------------ATACAGTGCCATTGTCGCTTAGTG--------------------------------------------------ATGTCCAATGTT---------TCCAT-----------GTCCATGTGTCGTC-------------CA--------TG-------------------------------------TCCGTCCTT----------------------------------------------------------------GTC-AT-------------------GTCTAG--------CAC-GACTGAGA-TCAGTCAGTAACG---A------GTCCAGC-CTCCTGGCAACCTGTTTAT---CCAACAGCTGCCGC---GTCGCAAGCGGT------CGAATCTGCTGACTGGA---ATGCAGCGCCGTCG------
dp5 XL_group1e:5114019-5114312 - dps_2693 TGTTCACCTCGCGCTTTAGCATCGGCAGCACCACC---AGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTAGAGATGAGTGTTTAGTTATTGTTTC----------------------------------------------------T-----TGTTGTATGTGTAT-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGGCTTGTGCCTCTGTAAGTCTGTTTT----------GT--------------------GCTCGTCG-----------------------------------------TCGT--CGTCCCT------------GGGTCTATTG-----------TTTCGTGTGG--------CTA-CAGTC----CCTGCTATTGAAT-------------GCCTA---CTGAA-------CTTCTGATCCACAGCGGCCGCTACGTCGGGAGCGGC------CGAATCTATTGACCGGA---ATGCAGCGCCGCAGACTGCA
droPer2 scaffold_21:21049-21353 - dpe_1142 TGTTCACCTCGCGCTTCAGCATCGGCAGCACCACC---AGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTAGAGATGAGTGTTTGGTTATTGTTTC----------------------------------------------------T-----TGTTGTATGTGT--TGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTCTCTGGCTTGTGTATCTGTAAGTCTGTTTT----------GT--------------------GCTCGTCTTCG--------------------------------------TCGT--CGTCCCT------------GGGTCTATTG-----------TTTCGTGTGG--------CTA-CAGTC----CCTGCTATTGAAT-------------GCCTA---CTGAA-------CTTCTGATCCACAGCGGCCGCTACGTCGGGAGCGGC------CGAATCTATTGACCGGC---ATGCAGCGCCGCAGACTGCA
droWil2 scf2_1100000004515:4493649-4493723 + CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCGA-------TCAT---CGTTTAGCCACCGC---GTCGTAAGCGCCAAAATCAAAATCTTTTAACCGGC---TTGCATCGTCGTAA------
droVir3 scaffold_12970:995977-996275 - dvi_12740 TCTTTGCATCACGTTTTAGCATTGGTTCCAGTGGT---ATCGGTGGCGG---------GGTACATTGTCTGCCAAGCGTCGAGGTAAAATACAA--C------------------------------------CGAATCATATTTGTGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------GCCGTCTCT-TTTTTT--------------TTTG-TTTAGCTTGTAG--------------------AGTATTCCC-------------------TGTGTTTACTGCCTGCCGTCA---TGCCT--TTTAGCTCCGTCCTCGTT-ATG----------------TTGTGTAC--------TCG-TACCGCAA-TGACCCATTAAAC-------------AAATAATTACTCC-------TTTT---ACAGCAACGGCGTC---GACGTCAACATA---AAAAAAATTTGTTTACAGGT---ATGCACCGCCGCAT------
droMoj3 scaffold_6473:3137812-3138105 + TCTTCGCATCTCGCTTCAGCATTGGCAACGGCGGC---GGCGGCGGCGGCGGAGGAGGAGGACAATGTCTGCCACGGGACGAGGTAAGAAAAGCAAG----------------------------------CAAAGAGCATCTGTGTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---------------GTCGTCTCC-TCTTGT-------------------------------------------------------------GTTTTAGCC---------TGTGTTTACTGCCTGTTGTCG---TGCCC--CCTATAAACGTCCTCGTG-CT----------------TTTGTGTGG--------TTGATGCCGCCA-CGGCCCATTAAAA-------------GAATA---ATATG-------CTCC---TTCACAGAGGCGGC---GTCACCGTAAAG------AGAGCCTGTTAAAGGGCATTATGCATCGCCGTCA------
droGri2 scaffold_15203:11978518-11978841 + TCTTTGCGTCACGGTTCAGCATGGGCAGCAGCGGCGCCACTGGTGGTGG---------TGGACAATGCCTGCCACGCGACGAGGTAAGTAGTAA--ATA---GTGTATTTTTGATGTTCTGTGCTGGT------------------------------------------------------------GCGT-GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGATTTGTGT-TTTGTTAGTTTGTTG-GAAAACATATATA-------------------GGTACAAAC-------------------TGTGTTAACTGCCAGTCATCGTTGT--CGTCCGT-----CGTCCTTGTG-ATT---------------GTTTTGTAG--------CTAGTACTACAA-CGGGTCATTTAC--------------AAAAACG-CTGTG-------CTCC---TTCACAGCAGCGGC---ACTCTCATCGTA---AAAAAAAAGTGTTGCCGCTA---AATCAACGCCGCAA------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTACTGG--A--------------------------------------------------------------------------------------------------------------------------------GGAGCAT---CTTTTAAATTGCC-TCGATGATGTTCA-------------------------------------------------------------------------------------------------------TCAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTT--------------TATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGT--------------------------------------T---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-TTGTTCCCATGTTGTCATCGTTTGTGG--------CTC-CAGTGCAG-CCGGCAACTGATC-------------AAATACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTTCTGACCGG........................1512.00200000000020000000
..........GCGATTCAGCGTTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
......................TGGCAGCAG------------------CG---------------GTTTACCCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...............TCAGCGTTGGCAGCAG------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
............GATTCAGCGTTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...............TCAGCGTTGGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
...............TCAGCGTTGGCAGCAG------------------CC---------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCGTGCTTTGA--------------------------------------.................................................................................................................................................................................................................................................................................................1550.20100000000010000000
droSec2
TCCTGACTCAACGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTACTGTGAAGA-------------------------------------------------------------------------TTGTTATGT-----------TGGATGTGCGTGCCCATGTGACACTGAACTTTCGGAGCAT---CTTTTAAATTGCC-TCGATGATGTTCA-------------------------------------------------------------------------------------------------------TCAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTT--------------TATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGT--------------------------------------T---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-CTGTTCCCATGTTGTCATCGTTTGTGG--------CTC-CAGTGCAG-CTGGCAACTGATC-------------AAATACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................TTGGCAGCAG------------------CG---------------GTTTACCCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAGGTAAGTATTGGGAAGA-------------------------------------------------------------------------TTGTTATGT-----------TTGATGT----GC------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCATAGTTCAGTGTCATTGGTCAATAGAGTAGTCAAAAGCTGTAGT----------T--------------TATTGGGAACGTCAAATGTGCCATAGTTGCTTGCTTTCGTGCTTCGTC------------------------CA--------TGTT---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-GTGTTCTCGTGTTGTCTTCGCTTGTGG--------CTC-GAGTGCAG-CCGGCAACTGACC-------------AAATACGCCTAGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGGCGTAG------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................G---------------GTTTACCCCGGGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
TCCTGACGCAGCGATTCAGCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000
...............TCAGCGTTGGCAGCAG------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGCAGCAG------------------CG---------------GTTTACCCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CG---------------GTTTACCCCGGGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000002000000000000000
................CAGCGTTGGCAGCAG------------------CG---------------GTTTACCCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCTGTAGT----------T--------------TATTGGGAA.............................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGCAGCAG------------------CG---------------GTTTACCCCGGGACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTC------------------------CA--------TGTT---------TGTGT--------------------CTTC..........................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTAAGTATTGGGAAGA-------------------------------------------------------------------------TTGTTATGT-----------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------CGAATCTTCTGACCGGA---....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGC------CGAATCTTCTGACCGGA---A...................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGCAGCAG------------------CG---------------GTTTACCCCGGGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........GCGATTCAGCGTTGGCAGCAG------------------CG---------------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................TAAGTATTGGGAAGA-------------------------------------------------------------------------TTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................GTAAGTATTGGGAAGA-------------------------------------------------------------------------TTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTGACC-------------AAATACGCCT............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAG------------------CG---------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------CGAATCTTCTGACCGGA---ATACACC.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAG------------------CG---------------GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGCGTTGGCAGCAG------------------CG---------------GTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GTTTACCCCGGGACGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGC------CGAATCTTCTGACCGGA---A...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTAAGTATTGGGAAGA-------------------------------------------------------------------------TTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGACGCAGCGATTCAGCGTTGGCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT---------TGTGT--------------------CTTCGTCCTC----------------------------------------------------------------GTG-GTGT............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-GTGTTCTCGTGTTGTC................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................GCAG------------------CG---------------GTTTACCCCGGGACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GACGCAGCGATTCAGCGTTGGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TCAGTGTCATTGGTCAATAGAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAG------------------CG---------------GTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGC---GGCGCAAGCGGC------CGA.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAG------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAACTGACC-------------AAATACGGA.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................GTAAGTATTGGGAAGA-------------------------------------------------------------------------TTGTTATGT-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTGCTTCGTC------------------------CA--------TGTT---------TGTGT--------------------C.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............TTCAGCGTTGGCAGCAG------------------CG---------------GTTTACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTATGT-----------TTGATGT----GC------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAG------------------CC---------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTACCCCGGGACGAGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAG------------------CT---------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCCTGACGCAGCGATTCAGCGTTGGCAGCAG------------------CG---------------GTTTGCCCCGGGACGAGGTAAGTGCTGCGGAGA-G--------------------------TGTGTCTAGAGTAGATTTGTGCTTTTCAATGT--------TTTGGTTGTTATGT-----------TGGATGT----GTCCAAGGGACACTGAACCTGCGGCGCAT---ATTTTATGTGCCCGCCGGTAAG----------------------------------------------------------------------------------------------------------GTTCAGTGTCCTTGGTCAATAGACTTGTCAAATGCTGTAGA------------------------------------------------CAGTTGCTTGCTTCCGTGCTTCGTC------------------------CA--------TTTGTC----------GT--------------------CTTCGTCCTCATGTT-----------------------------------------------------------------GTCC-----------TCATGTGTGG--------CTC-GAGTGCAC-TCGGCAACTGACC-------------AAAAACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCTCAAGCGGC------CGAATCTTTTGACCGGA---ATACACCGCCGTAA------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCCTGACGCAGCGTTTCAGCGTTGGCAGCAG------------------CG---------------GTTTGCCCCGGGACGAGGTACGTACTCCGGAG-----------------------------TTGGTCAAGAGTAGATTTGTGCTTTTCAATGT--------TTTGGTTGTCATGT-----------TGTATGT----GCCCATGTGACACTGAACTTTCGAGGCATTGTTTTTTATAT--CC-TCGATAAC----------------------------------------------------------------------------------------------------------GTTCAGTGTCATTGGT--------------------------------------------------------GAACGTTAAATGTGCCTTAGTTGCTTGCTTCCGTACTTCGTC------------------------CA--------TGTTCC----------GT--------------------CTTCGTCCATGTTCCGTACTTCGTCCAT---------GTTG---CG---TCGT--CGTCCTT------------GTG-CTGTCC-----------TCGTGTGTGG--------CTC-GAGTGCAG-CCGGCAACTGACC-------------AATTACGCCTGGC-------CTAT---CCCACAGCTGCCGC---GGCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACACCGCCGTAA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................ATGTGACACTGAACTTTCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22113.0013001300000000
....................GTTGGCAGCAG------------------CG---------------GTTTGCCCCGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.00900000000009
...............................................................................................................................................................................................................ATGTGACACTGAACTTTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300210000000
...............................................................................................................................................................................................................ATGTGACACTGAACTTTCGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000
.....................TTGGCAGCAG------------------CG---------------GTTTGCCCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEug1
TCTTGACGCAACGTTTTAGCGTTGGCAGTAG------------------TG---------------GCCTGCCCCGGGACGAGGTAAGTCCGGATTAG-----------------------------TCTGT--CGTGTAGATTTGTGCTTTTCAATGT--------TTTG---------------------------------TTTATGTAAAAGTGAACTTTCGAGAAAG---------AAT--TC-TCGGTACTGGTCGTAGTGGTCATTGTCATCCAATTTTGATTTAATAGATAGTGCTAG----------------------------GAACTG-CAACTTATGTGCT-TCATATTAGCATAGTGTCATAGGTCT--------------------------------------------------TT-----------GTGTGTCGTAGTTACTTGCCTTCGGGCTTTGTC------------------------CA--------TGTCTT----------GT--------------------CTTTGTCCTCGTGGT-----------------------------------------------------------------GTCC-----------TCGTTTGTGG--------CTC-ACCATTAGCCCGGCAACTGATC-------------GAATATGTCTGAC-------TTAT---CCAACAGCTGCCGC---GAAGTACGCGGC------CGAATCTTATTACTGGT---ATGCAGCGCCGTAG------SizeHit CountTotal NormTotal
No Reads
droBia1
TAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGTCCAAAGCTCTAGT----------TTAGTATCGTAGGGCATTC--------GAAC---------------TGCCCCAGTACTTAGTC-------CATTTGT-C--------CA--------CGTGTC----------GTCCTCGTGCTTGTCGTGTTGTCGTCGCCC-----TC-----------------------------------------------------------GT------CC------------TTTGTGTGG--------CTC-CACTGCCG-CCGGCAACTGA----------------------CCTGGC-------CTCT---CCCTCAGCTGCCGC---ATCGCAAGCGGC------CGAATCTTCTGACCGGA---ATACAGCGCCGTAG------SizeHit CountTotal NormTotal
No Reads
droTak1
GTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA------------------------CT--------CGTGTT----------GT--------------------CTTCGTCCTGGT--------------------------------------CGT--CATC---------------------------------------CTAGTGA--------CT------------TGACCTCTGA----------------------CCTGAG-------CTCT---CCCACAGCTGCCGC---AACGCAAGCGGT------CGACCCTTCTGACCGGA---ATACAGCGACGTAG------SizeHit CountTotal NormTotal
No Reads
droEle1
TAGC---CCATTGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAGTGTCATGGGTAA--------------------------------------------------TTGAATATGTAAAGTGTAGCCTAGCTGC------------TTTGT--------------------------------------C---------CTCGTCATCGTCATCGT--CATCGTCTTCGTCCATGTGTT-----------------------------------------------------------------GTCC------------TTTGTGTGG--------TTC-CAGTGCAG-CCGGCCACTGACC-------------GAATACGCCTGGC-------CTTT---CCCACAGCTGCCGC---ATCGCAAGCGGT------CGAATCTACTGGCCGGG---ATACAGCGTCGCAA------SizeHit CountTotal NormTotal
No Reads
droRho1
TAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGGTGAAGTGTGCCATAGCTG------------CTTTGTC------------------------CA--------AGTATT----------AT--------------------TTTCGTCCATGTGTT-----------------------------------------------------------------GTCC------------TTTGTGTGG--------CTC-CACTG----CCGGCAACTGA----------------------CCTGGC-------CTTT---TCCACAGCTGCCCC---ATCGCAAGCGGT------CGAATCTACTGACTGGT---ATACAGCGTCGCAA------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCTTACGCAGCGTTTTAGCGTTGGCAGCAG------------------CG---------------GTTTGCCACGGGACGAGGTAAGTAAAAAGAAA-TCAATG--------------------------T--T-GGTAGATATGTCATTTTCCATGT--------TTTGGTTG---TGT-----------TCAATGT----GCTTTTGTTACAAAGAAAT-------------------------------------------------------------------------------GTAAG-------------------------------CTAG-TTAGTGGGC--TATTGCTTTCGTTCAGT---------------------------------------------------------------------GTAAAGTGTGCCTCAGCTG------------------C------------------------CA--------CGTCTC----------GT--------------------CCTTGTCCACTTCAT-----------------------------------------------------------------GTTC------------TTTGTGTGGCTGTGTAGCTC----TGTAG-CCGGCAATTGA----------------------CTTGGCA------ATCT---CCCACAGCTGCCGC---GTCGTCAGCGGC------CGAATCTTCTGACCGGC---GTGCACCGCCGCAT------SizeHit CountTotal NormTotal
No Reads
droKik1
TGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------T---------GTTAT--------------TGTCGTCCTTGTCAATGT--------------------------------------------------------------------GCGC-----------TTCTATGTGG--------CTC--AGTGCAG-CCGGAAGTTAACAACAATCGAATACCAAATAC-CCTGGC-------ATCT---CCCACAGCTGCCTC---AACGCAAGCGGT------CGACTATATTGACCAGG---TTGCAGCGCCGCAG------SizeHit CountTotal NormTotal
No Reads
droAna3
TCCTATCCTCGCGCTTCAGCGTGGGCAGCAG------------------CG---------------GCCTGCCACGGGACGAGGTAAGGATCCC--AG-----------------------------CTTGT--GGAGTAGATTTGAATTT--GTGTT-TTTGGCTTTTTGGTTGT-----AGAATGCTTGT-GTCCAT----GTCCATGTGGCACTGGAAG-----------------------------------------AA--GGTATTGTTCC-GA----------ATTAGAAAGGGTCAG-------------------------------CTA--TACCTATGC--CAGTGCCATCGTCCAGTGTCTTAGGTGAG-----------------------------------------------------------------------------------CTGTGTTTCGTC------------------------CA--------TGTC-----------------------------------------CGTTCTCCGTCCTCCGTCCCA----------------------------------------------GTC-GT-----------------------GT--------C--------TAA-CAAGTCATTACTG-------------AGACA---GCATC-------CCAT---CCAACAGCTGCCGC---GTCGCAAGCGGC------CGAATCTGCTGACCGGA---ATGCAGCGCCGTCG------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............TCAGCGTGGGCAGCAG------------------CG---------------GCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---GTCGCAAGCGGC------CGAATCTGCTGAC...........................2711.001100000
droBip1
TCCTGTCCTCGCGTTTCAGCGTCGGCAGCAG------------------CG---------------GCCTGCCACGGGACGAGGTAAGTCCAGGGT----------CCTTCCGG-GGGCTGCTCTGGTTTGT--GTAGTAGACTTGTGAGTATGTGTTTTTTGGCTATTTGGTTGT-----AGAATGCTT-------AT----GTCCAACTGGCACTGGACGG----------------------------------------AA--GGTATAGTCAC-GA----------ATTAGAGCAGGACAGATATATACAATGGTCTCGCTCTAATTCGGTACTA--TACCAATG-------------ATACAGTGCCATTGTCGCTTAGTG--------------------------------------------------ATGTCCAATGTT---------TCCAT-----------GTCCATGTGTCGTC-------------CA--------TG-------------------------------------TCCGTCCTT----------------------------------------------------------------GTC-AT-------------------GTCTAG--------CAC-GACTGAGA-TCAGTCAGTAACG---A------GTCCAGC-CTCCTGGCAACCTGTTTAT---CCAACAGCTGCCGC---GTCGCAAGCGGT------CGAATCTGCTGACTGGA---ATGCAGCGCCGTCG------SizeHit CountTotal NormTotal
No Reads
dp5
TGTTCACCTCGCGCTTTAGCATCGGCAGCACCACC---AGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTAGAGATGAGTGTTTAGTTATTGTTTC----------------------------------------------------T-----TGTTGTATGTGTAT-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGGCTTGTGCCTCTGTAAGTCTGTTTT----------GT--------------------GCTCGTCG-----------------------------------------TCGT--CGTCCCT------------GGGTCTATTG-----------TTTCGTGTGG--------CTA-CAGTC----CCTGCTATTGAAT-------------GCCTA---CTGAA-------CTTCTGATCCACAGCGGCCGCTACGTCGGGAGCGGC------CGAATCTATTGACCGGA---ATGCAGCGCCGCAGACTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTGACCGGA---ATGCAGCGCCGCAGA.....2811.0010000001000
........................................CGGCAGCAGTG---------------GCCTGCCCCGTGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
TGTTCACCTCGCGCTTCAGCATCGGCAGCACCACC---AGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTAGAGATGAGTGTTTGGTTATTGTTTC----------------------------------------------------T-----TGTTGTATGTGT--TGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTCTCTGGCTTGTGTATCTGTAAGTCTGTTTT----------GT--------------------GCTCGTCTTCG--------------------------------------TCGT--CGTCCCT------------GGGTCTATTG-----------TTTCGTGTGG--------CTA-CAGTC----CCTGCTATTGAAT-------------GCCTA---CTGAA-------CTTCTGATCCACAGCGGCCGCTACGTCGGGAGCGGC------CGAATCTATTGACCGGC---ATGCAGCGCCGCAGACTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCT------------GGGTCTATTG-----------TTTCGTGTGG--------.............................................................................................................................................2411.001010000
..................................................G---------------GCCTGCCCCGTGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droWil2
CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCGA-------TCAT---CGTTTAGCCACCGC---GTCGTAAGCGCCAAAATCAAAATCTTTTAACCGGC---TTGCATCGTCGTAA------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCTTTGCATCACGTTTTAGCATTGGTTCCAGTGGT---ATCGGTGGCGG---------GGTACATTGTCTGCCAAGCGTCGAGGTAAAATACAA--C------------------------------------CGAATCATATTTGTGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------GCCGTCTCT-TTTTTT--------------TTTG-TTTAGCTTGTAG--------------------AGTATTCCC-------------------TGTGTTTACTGCCTGCCGTCA---TGCCT--TTTAGCTCCGTCCTCGTT-ATG----------------TTGTGTAC--------TCG-TACCGCAA-TGACCCATTAAAC-------------AAATAATTACTCC-------TTTT---ACAGCAACGGCGTC---GACGTCAACATA---AAAAAAATTTGTTTACAGGT---ATGCACCGCCGCAT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGGT---ATGCACCGCCGC........2011.001000000000000000000000000000000000000100000000000000000000000000
......................................ATCGGTGGCGG---------GGTACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
................................GGT---ATCGGTGGCGG---------GGTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................GTACATTGTCTGCCAAGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.....GCATCACGTTTTAGCATTGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................TTGGTTCCAGTGGT---ATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
..........................................................GGTACATTGTCTGCCAAGCGTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--------TCG-TACCGCAA-TGACCCA.........................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
............................................................TACATTGTCTGCCAAGCGTCGAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..TTTGCATCACGTTTTAGCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAG--------------------AGTATTCCC-------------------TGTGTT............................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.....GCATCACGTTTTAGCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCC-------TTTT---ACAGCAACGGC................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTTCGCATCTCGCTTCAGCATTGGCAACGGCGGC---GGCGGCGGCGGCGGAGGAGGAGGACAATGTCTGCCACGGGACGAGGTAAGAAAAGCAAG----------------------------------CAAAGAGCATCTGTGTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---------------GTCGTCTCC-TCTTGT-------------------------------------------------------------GTTTTAGCC---------TGTGTTTACTGCCTGTTGTCG---TGCCC--CCTATAAACGTCCTCGTG-CT----------------TTTGTGTGG--------TTGATGCCGCCA-CGGCCCATTAAAA-------------GAATA---ATATG-------CTCC---TTCACAGAGGCGGC---GTCACCGTAAAG------AGAGCCTGTTAAAGGGCATTATGCATCGCCGTCA------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCTTTGCGTCACGGTTCAGCATGGGCAGCAGCGGCGCCACTGGTGGTGG---------TGGACAATGCCTGCCACGCGACGAGGTAAGTAGTAA--ATA---GTGTATTTTTGATGTTCTGTGCTGGT------------------------------------------------------------GCGT-GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGATTTGTGT-TTTGTTAGTTTGTTG-GAAAACATATATA-------------------GGTACAAAC-------------------TGTGTTAACTGCCAGTCATCGTTGT--CGTCCGT-----CGTCCTTGTG-ATT---------------GTTTTGTAG--------CTAGTACTACAA-CGGGTCATTTAC--------------AAAAACG-CTGTG-------CTCC---TTCACAGCAGCGGC---ACTCTCATCGTA---AAAAAAAAGTGTTGCCGCTA---AATCAACGCCGCAA------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:42 AM