ID:

dsi_21711

 Coordinate:

2r:4263048-4263197 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_4263198_4263247_-]; exon [2r_4263198_4263450_-]; intron [2r_4262131_4263197_-]

No Repeatable elements found

mature
star
  1. dsi_21711  2r:4263113-4263128 -
  2. node_28048:388-403 +
  3. node_30016:7305-7320 +

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGCCGGTCGATATATGCAGTCAACCGCACAATTTGCTCAGTTCAATGAGGTAAACTATTAAACGACGCTGATTGAATTTTCCCATTCTCCGCAATCGAGTTTTCCAATTACCATGGCCTCTAAAGTGAAAATGTAATATGTGTCGGGAAAATATCTTGAGTTTGCAAGCATATACACTTTAGAATTTCTTTTAATTTTTATTAGACTTTAAAAACGTCTTAAATTTAGAGATTTTACTCACAGTTTTGA
***********************************************************************************************************************(((((((((...((((........((((((.....))))))........))))...))))))))).........********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
....CGGTCGATATATGCAGTC.................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0
ATGCCGGTCGATATATGCAGT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................ATATACACTTTAGAATTTCTTTT......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................ACCGCACAATTTGCTCAGT................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0
......GTCGATATATGCAGTCAACC................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.........GATATATGCAGTCAACCGCACAATTT....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TCTAAAGTGAAAATGT................................................................................................................... 16 0 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................TTCTTTTAATTTCTATTAGGGT.......................................... 22 3 3 0.33 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................TTTTATTCGACTTTAAAA.................................... 18 1 4 0.25 1 0 0 0 0 0 1 0
.....................................TCAGTTTTATGAGGTAAA................................................................................................................................................................................................... 18 2 17 0.24 4 2 0 1 0 0 0 1
..............................................................ACGACGCTGATTGGA............................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................................AATACGTCTTAAACTTCGA.................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

TACGGCCAGCTATATACGTCAGTTGGCGTGTTAAACGAGTCAAGTTACTCCATTTGATAATTTGCTGCGACTAACTTAAAAGGGTAAGAGGCGTTAGCTCAAAAGGTTAATGGTACCGGAGATTTCACTTTTACATTATACACAGCCCTTTTATAGAACTCAAACGTTCGTATATGTGAAATCTTAAAGAAAATTAAAAATAATCTGAAATTTTTGCAGAATTTAAATCTCTAAAATGAGTGTCAAAACT
*********************************************************(((((((((...((((........((((((.....))))))........))))...))))))))).........*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
.................................................CCATTTGATAATTTGCTGCGACTAACTT............................................................................................................................................................................. 28 0 1 4.00 4 3 1 0 0 0 0 0 0 0
.............................................................TTGCTGCGACTAACTTAAAAGGGT..................................................................................................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0
........................................................................................AGGCGTTAGCTCAAAAGGTTAATGGT........................................................................................................................................ 26 0 1 3.00 3 2 0 1 0 0 0 0 0 0
...................................................................CGACTAACTTAAAAGGGTAAGAGGCGT............................................................................................................................................................ 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.......................................................................................GAGGCGTTAGCTCAAAAGGTTAATGGT........................................................................................................................................ 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.............................................................TTGCTGCGACTAACTTAAAAGGGTAA................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................ACTCCATTTGATCATTTGCTGCGACT.................................................................................................................................................................................. 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0
............................................TTACTCCATTTGATAATTTGCTGCGACT.................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................AAATAATCTGAAATTATTTCACAATTT.......................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................TTGATAATTTGCTGCGACTAACTT............................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGAAAATTAAAAATAATCTGAAAT....................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................GACTAACTTAAAAGGGTAAGAGGCGTT........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................TTAGCTCAAAAGGTTAATGGTA....................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........................................................................................GCGTTAGCTCAAAAGGTTAAT........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................TAAACGAGTCAAGTTACTCCATTTGAT................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CGTTAGCTCAAAAGGTTAATGGTAC...................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................ATTTGCTGCGACTAACTTAAA.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................AGAAAATTAAAAATAATCTGAAATTAT.................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................AGGCGTTAGCTCAAAAGGTTAATGG......................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................CAATCGTCCGTATATGTGAAACCTT................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................TAAAAGGGTAAGAGGCGT............................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................AGGGTAAGAGGCGTTAGCTCAAAAGGTT.............................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............ATACGTCAGTTGGCGTGTT.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...............................................................................................................GGTACCGGAGATTTCACTTTTACATT................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..CGGCCAGCTATATACGTCAGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................GGAGATTTCACTTTTACATTAT............................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................GTTGGCGTGTTAAACGAGTCA................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......CAGCTATGTACGTCAGTTGGC............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................CTGCGACTAACTTAAAAGGGTAAGAGG............................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................AAGAGGCGTTAGCTCAAAAGGTTAA............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................TTTGCTGCGACTAACTTAAAAGGGT..................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................AAGGTTAATGGTACCGGAGATTTCACTT........................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................TGGCGTGTTAAACGAGTCAAGTTACTC........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................CGAGTCAAGTTACTCCATTTGATAAT............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................CTTAAAAGGGTAAGAGGCGTTAG......................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................AGGCGTTAGCTCAAAAGGTTAAT........................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................AGGTTAATGCTACCGGAGATTTGACTTTT...................................................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................TTCACTTTTACATTATACACAGCCCTTTT.................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................AAAAGGTTAATGGTACCGGAGATTT............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAAAATAATCTGAAATTATTGCAC............................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCGAACTCAAGCGATCGTA.............................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................AAAATAATCTGAAAGT...................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAATAAAATTAAAAATAAT.............................................. 19 1 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................................................................................TCTTAATGGTGCCGGAGA................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0
......................................................................................................AAGGTTGAAGGTACCGG................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4262998-4263247 - dsi_21711 ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCTGATT-GAA-TTTTC-----------------CCATTCTCCGCAATCGAGTTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGTAATATGTGTCGGGAAAATATC---TTG-AGTTTGCAA---GCATATACACTTT---------------AG--A-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGACTTTA--------------------AAAACGT--C---------------------------TTAAATTTAGAGATTTTACTCAC-------------------AGTTTT--------------------------GA
droSec2 scaffold_1:1073262-1073511 - ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCTGATT-GAA-TTTTC-----------------CCATTCTCCGCAATCGAGCTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGTAATATGTGTCGGGAAAATATC---TTG-AGTTTGCAA---GCATATAAACTTT---------------AG--A-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGACTTTA--------------------ATAACGT--G---------------------------TTAAATTTAGAGATTTTACACAC-------------------AGTTTT--------------------------GA
dm3 chr2R:3416348-3416582 - ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGATGCTGATT-GAATTTTCC-----------------CCATTCTCCCCAATCGAGTTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGCAATATGTATCGGGAAAATATC---TTG-AGTC-------------------TT---------------AG--G-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGTTTTTA--------------------ATAGCGT--G---------------------------TTTAATTTAGAGATTTTACTCAC-------------------AGTTTT--------------------------GA
droEre2 scaffold_4929:19182240-19182471 + ATGCCGGTCGATATTGTATGCAGTCAACC---------ACACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCCGATT-GAA-TTTTC-----------------CCATTGT-CCCAATCGAGTTTTCCAATTACCGTGGACTTT-----------------------------------ATTGTGATA-------------------------------------------------------------TATTAGGAGCACTTTCAAAA---------------ATCGCGAAAATATT---TTA-GGTTTCCAA---GCATATACC-----------------------------------ATTTAT----------------------------------------------------------------------------------------------CCTTGTAATTT----------------ACAA------------------TA--ATTTGCAATTTTCGTT----------------------------TAC-------------------------------------------------------AA
droYak3 2L:16093569-16093804 - ATGCCGGTCGATGT---GTGCAGTCAACC---------ACACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCCGATT-GAA-TTTTC-----------------CCATTTT-CCCGATCAAGTTTTCCAATTACCGTGGCCTTT-----------------------------------ATTGTGA-------------------------------------------------------------------------------------ACAT----------------ATGTATT---TAT-AGTTTGCAA---GCATACATCTTTT---------------AA--C-----------ATTTAT----------------------------------------------------------------------------------------------TCGTGTAATTTTTCGAAGTCTTCA--------------------GTAATGT--G---------------------------ATAAATTTACAGATTTTACAAAT-------------------AGTTTT--------------------------TA
droEug1 scf7180000409672:5431063-5431282 - ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCGGTTCAAGAAGGTAAACTTTTAA----ACGACGCTGATT-GAG-TTTTT-----------------CCATTCC-CGTAATAGGGGTTTTCAATTCATATGGACCTTATGGAGTGTGTTAATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------ATTGGATA----------------------------------------------------------------------------------------------------------------------------------------ACCAA---------------------------------------TTTTTAAAACATAATAATA-----AAACT-----ATACTCAATTAAT----------------------TTTCAAGAAATTTTTTAGTGAGATCGC--------------------------TT
droBia1 scf7180000302292:2726250-2726541 + ATGCCGGTCGATAT---ATGCAGTCAGCC---------ACACAACTTGCTCGGTTCAATGAGGTAAACTATTAA----ACGACGCTGATTTCAG-TTTTT-----------------CCATATT-CCTAATAGGGCTTTCCAATTATAAAAACATCT-----------------------------------ATC-T-------------------------------G----------------------------------------------------AA------------------AGAAAATCTT---TTTAA--------CAA--------ATT-T------GTGTCATAATTAAA-----------CATTTTTTTTTAATGGTACAGTGATATATTTCATTTTAAATGAGTAAGAGTGTCAGCATACAAAAAAATTCCATAAAGCTGGGGGA------------------------------------AA--------------------AATACGA--C---------------------------TTTATTTTAGAACATTTTTCCGT-------------------TTTTTT--------------------------GG
droTak1 scf7180000416016:18767-18992 - ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCAGCTCAAGGAGGTAAACTATTAA----AC---TGTGATT-GAA-TTTTT-----------------CCATTCC-TGTAATTGAGTTTTTCAATTACATTGAACTTT-----------------------------------AGA-----------------------------------------------------------------------------------------------------------GAAAACATTTTTTATAA--------AAT--------ATTCTAACCTTGAGTTA--AAT--A-----------AATTCT--------------------------------------------------------------------------------TT-----------------T----TTAATTAAAAGTTC--------------------CAGAGGT--A----------------AAAAATTAAAAATT---------ATTTTAATCTA-------------------AATATT--------------------------CA
droEle1 scf7180000491347:252473-252739 - ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAGTTTGCTCAGTTCAAGAAGGTAAACTATTAA----TTGAAGCTGATT-GAG-TATAT-----------------CAATTCT-AGTGATCGAGTTTTTCAATTACTTAC-CCT---------------------ACTTAT----TCGTTCAA----------------------------------G----------------------------------------------------AA------------------GGAAAATATT---TTA-AAA--------T--------GTCC-----------------G--TTGAATTCTTCT--------------------------------------------------------------------------------------TATAACATTTTTTA-------------ATTAAACCTAACTTAAAA------------------AA--A-TTCAAATTTTTGAAAACAAATGAGTGTTT---------------------------------------AGTGCTTAAAGTTATGCACTGTGTAAGATGTAGA
droRho1 scf7180000780160:30421-30701 - ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCAGTTCAATAAGGTAAACTATTAA----TTGAAGCTGATT-GAG-TTTTT-----------------TCGTTCT-AGTAATAGAGTTTTCCAATTACGGTTGACTCTTTAAAGTGTTT--ACCCCTAAGTATAATATCGTTCAAGGT-------------------------------G----------------------------------------------------AA------------------AGAAAATATT---TTT-AAATTATAGGATGCATAAATTTTTT---------------GG--CTTAAGTTTTCT--------------------------------------------------------------------------------------TACAATTATTTCTA-------------AATAAACATAACT------------------AAATTGT--T-TTCAAAT-----AAAAAAAATTAATAGCT---------------------------------------ATTGCT--------------------------GA
droFic1 scf7180000453948:173973-174160 - ATGCCGGTCGATAT---CTACAGTCAACC---------TCACAATTTGCTCAGTTCAATAAGGTAAACTATTAA----TTGGCGTTGATT-GGA-TTTTC-----------------TCATTCT-CGCAATCGAGTTTTCCAGCCACACTAACCTAT-----------------------------------AAGG--------------------------------G----------------------------------------------------TAAAA-----------------ACAATATT---TT-AA--------CAT--------ATT-TAACCTCGAG-------------------------------------------------------------------------------------AAACATTG-AT--------------------------------------------AA----------------------------------------------------------------ATTTTAGAAGTTTAACC--------------------------------------------------------
droKik1 scf7180000302471:24677-24971 + ATGCCGGTCGATAT---ATGCAGTCAACA---------GCACACATTGCTCAGTTCCAGAAGGTAAACTATCAA----AT-----TGATT-GGA-TTTTTCCCTTGACGAGATTTTTCCATTGC-CGCAATAGAGTTTTCCAATTAACACTTTGCCG-----------------------------------GCTGTGAAATAAGTGAATGTTCTGTCATTCGTGAGAGTGAACTCAAGGTTTAAATAAAATTAAATATGCCTATTAGGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATTATTCA-------------ATTCAGCCGTAGCTACAAAGTTTTTTAAACGAAAATGTATT-GTAAAGT-----AAACCAAATTAAT----------------------TC-------------------GGTCTT--------------------------TA
droAna3 scaffold_13266:9940949-9941020 - ATGCCGGTCGATAT---CTGCAGTCAACA---------AATAAATT---TCAGTTCAATAAGGTAAATTATGGA----TTGAAAGTAATT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396759:1657274-1657363 - ATGCCGGTCGATAT---TTGCAGTCAACA---------ACACAATTTGCTCGGTTCAATAAGGTAAACTATTGA----TTGAAAGTAATT-GGC-CTT--------------------CATGCCCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:12326459-12326516 + ATGCCGGTCGATAT---TTGTAGTCAACC---------CCACACTTTGCTCAGTACAAGAAGGTAAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_44:508582-508639 + ATGCCGGTCGATAT---TTGTAGTCAACC---------CCACACTTTGCTCAGTACAAGAAGGTAAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004382:97281-97397 + ATGCCCGTTGAAAT---TTTTAATCAACAACAACAACCGCACAATTTGCTTAGTTCAATAAGGTAAATCATTAATTAATTGATTTTTATT-GAA-TTTTC-----------------C-----------------------AATTGCTG--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:17561693-17561779 - ATGCCGGTCGATAT---TTGCAGTCAGCA---------GCACAATATGATTAGCTCAATAAGGTAAAGCCCATA----TAGATTTTTATT-GAC-TTTCT-----------------CAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:11191098-11191174 - ATGCCGGTCGACAT---TTGCAGTCAGCAGCAGCA---TACAAATATGATAAGCTCCCTAAGGTAAAGCCCCTA----T------------------------------------------------------------CAAATTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:17100092-17100145 - ATGCCGGTCGATAT---TTGCAGTCAACA---------GCACAGCTTGATTAAGCCAATAAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCTGATT-GAA-TTTTC-----------------CCATTCTCCGCAATCGAGTTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGTAATATGTGTCGGGAAAATATC---TTG-AGTTTGCAA---GCATATACACTTT---------------AG--A-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGACTTTA--------------------AAAACGT--C---------------------------TTAAATTTAGAGATTTTACTCAC-------------------AGTTTT--------------------------GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....CGGTCGATAT---ATGCAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
ATGCCGGTCGATAT---ATGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................ATATACACTTT---------------AG--A-----------ATTTCT--------------------------------------------------------------------------------TT-----------------T.......................................................................................................................................................2311.00100010000000000000
..........................ACC---------GCACAATTTGCTCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
......GTCGATAT---ATGCAGTCAACC---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.........GATAT---ATGCAGTCAACC---------GCACAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..........................................................................................................................................................TCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGT.....................................................................................................................................................................................................................................................................................................................................................1630.33100000000001000000
droSec2
ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCTGATT-GAA-TTTTC-----------------CCATTCTCCGCAATCGAGCTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGTAATATGTGTCGGGAAAATATC---TTG-AGTTTGCAA---GCATATAAACTTT---------------AG--A-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGACTTTA--------------------ATAACGT--G---------------------------TTAAATTTAGAGATTTTACACAC-------------------AGTTTT--------------------------GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........ATAT---ATGCAGTCAACC---------GCACAATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
dm3
ATGCCGGTCGATAT---ATGCAGTCAACC---------GCACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGATGCTGATT-GAATTTTCC-----------------CCATTCTCCCCAATCGAGTTTTCCAATTACCATGGCCTCT-----------------------------------AAAGTGA-------------------------------------------------------------------------------------AAATGCAATATGTATCGGGAAAATATC---TTG-AGTC-------------------TT---------------AG--G-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGTTTTTA--------------------ATAGCGT--G---------------------------TTTAATTTAGAGATTTTACTCAC-------------------AGTTTT--------------------------GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................TGCAATATGTATCGGGAAAATATC---TTG-.........................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTTGCTCAGTTCAATGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................C---------GCACAATTTGCTCAGTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGCCGGTCGATAT---ATGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..GCCGGTCGATAT---ATGCAGTCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ATCGGGAAAATATC---TTG-A........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTCAACC---------GCACAATTTGCTCAGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACC---------GCACAATTTGCTCAGTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATGCCGGTCGATAT---ATGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................TAA----ACGATGCTGATT-GAATTTTCC-----------------CCATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCCGGTCGATAT---ATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGCCGGTCGATAT---ATGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.TGCCGGTCGATAT---ATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATAT---ATGCAGTCAACC---------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
ATGCCGGTCGATAT---ATGCAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TC-------------------TT---------------AG--G-----------ATTTCT--------------------------------------------------------------------------------TT-----------------TAATTTTTATTAGT..........................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGCCGGTCGATAT---ATGCAGTCAACC---------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TTTCCAATTACCATGGCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGTTCAATGAGGTAAACTATTAA----A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CC---------GCACAATTTGCTCAGTTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATGCCGGTCGATATTGTATGCAGTCAACC---------ACACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCCGATT-GAA-TTTTC-----------------CCATTGT-CCCAATCGAGTTTTCCAATTACCGTGGACTTT-----------------------------------ATTGTGATA-------------------------------------------------------------TATTAGGAGCACTTTCAAAA---------------ATCGCGAAAATATT---TTA-GGTTTCCAA---GCATATACC-----------------------------------ATTTAT----------------------------------------------------------------------------------------------CCTTGTAATTT----------------ACAA------------------TA--ATTTGCAATTTTCGTT----------------------------TAC-------------------------------------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
ATGCCGGTCGATATTGTATGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020001100
.....................................................................................................................................................................................................GATA-------------------------------------------------------------TATTAGGAGCACTTTC.................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.TGCCGGTCGATATTGTATGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........GATATTGTATGCAGTCAACC---------ACACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
............................C---------ACACAATTTGCTCAGTTCAATGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...........TATTGTATGCAGTCAACC---------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.TGCCGGTCGATATTGTATGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
........CGATATTGTATGCAGTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
........CGATATTGTATGCAGTCAACC---------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....GGTCGATATTGTATGCAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
ATGCCGGTCGATGT---GTGCAGTCAACC---------ACACAATTTGCTCAGTTCAATGAGGTAAACTATTAA----ACGACGCCGATT-GAA-TTTTC-----------------CCATTTT-CCCGATCAAGTTTTCCAATTACCGTGGCCTTT-----------------------------------ATTGTGA-------------------------------------------------------------------------------------ACAT----------------ATGTATT---TAT-AGTTTGCAA---GCATACATCTTTT---------------AA--C-----------ATTTAT----------------------------------------------------------------------------------------------TCGTGTAATTTTTCGAAGTCTTCA--------------------GTAATGT--G---------------------------ATAAATTTACAGATTTTACAAAT-------------------AGTTTT--------------------------TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
ATGCCGGTCGATGT---GTGCAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300000030000
......................GTCAACC---------ACACAATTTGCTCAGTTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00220000000000
.........................AACC---------ACACAATTTGCTCAGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..............................................................................................................................................................................................................................................................................................................................................ACATCTTTT---------------AA--C-----------ATTTAT----------------------------------------------------------------------------------------------TCGTGT.......................................................................................................................................................2411.00101000000000
.......................................CACAATTTGCTCAGTTCAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.TGCCGGTCGATGT---GTGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
ATGCCGGTCGATGT---GTGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
ATGCCGGTCGATGT---GTGCAGTCAACC---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
............GT---GTGCAGTCAACC---------ACACAATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEug1
ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCGGTTCAAGAAGGTAAACTTTTAA----ACGACGCTGATT-GAG-TTTTT-----------------CCATTCC-CGTAATAGGGGTTTTCAATTCATATGGACCTTATGGAGTGTGTTAATTTCTA----------------------------------------------------------------------------------------------------------------------------------------------ATTGGATA----------------------------------------------------------------------------------------------------------------------------------------ACCAA---------------------------------------TTTTTAAAACATAATAATA-----AAACT-----ATACTCAATTAAT----------------------TTTCAAGAAATTTTTTAGTGAGATCGC--------------------------TTSizeHit CountTotal NormTotal
No Reads
droBia1
ATGCCGGTCGATAT---ATGCAGTCAGCC---------ACACAACTTGCTCGGTTCAATGAGGTAAACTATTAA----ACGACGCTGATTTCAG-TTTTT-----------------CCATATT-CCTAATAGGGCTTTCCAATTATAAAAACATCT-----------------------------------ATC-T-------------------------------G----------------------------------------------------AA------------------AGAAAATCTT---TTTAA--------CAA--------ATT-T------GTGTCATAATTAAA-----------CATTTTTTTTTAATGGTACAGTGATATATTTCATTTTAAATGAGTAAGAGTGTCAGCATACAAAAAAATTCCATAAAGCTGGGGGA------------------------------------AA--------------------AATACGA--C---------------------------TTTATTTTAGAACATTTTTCCGT-------------------TTTTTT--------------------------GGSizeHit CountTotal NormTotal
No Reads
droTak1
ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCAGCTCAAGGAGGTAAACTATTAA----AC---TGTGATT-GAA-TTTTT-----------------CCATTCC-TGTAATTGAGTTTTTCAATTACATTGAACTTT-----------------------------------AGA-----------------------------------------------------------------------------------------------------------GAAAACATTTTTTATAA--------AAT--------ATTCTAACCTTGAGTTA--AAT--A-----------AATTCT--------------------------------------------------------------------------------TT-----------------T----TTAATTAAAAGTTC--------------------CAGAGGT--A----------------AAAAATTAAAAATT---------ATTTTAATCTA-------------------AATATT--------------------------CASizeHit CountTotal NormTotal
No Reads
droEle1
ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAGTTTGCTCAGTTCAAGAAGGTAAACTATTAA----TTGAAGCTGATT-GAG-TATAT-----------------CAATTCT-AGTGATCGAGTTTTTCAATTACTTAC-CCT---------------------ACTTAT----TCGTTCAA----------------------------------G----------------------------------------------------AA------------------GGAAAATATT---TTA-AAA--------T--------GTCC-----------------G--TTGAATTCTTCT--------------------------------------------------------------------------------------TATAACATTTTTTA-------------ATTAAACCTAACTTAAAA------------------AA--A-TTCAAATTTTTGAAAACAAATGAGTGTTT---------------------------------------AGTGCTTAAAGTTATGCACTGTGTAAGATGTAGASizeHit CountTotal NormTotal
No Reads
droRho1
ATGCCGGTCGATAT---ATGCAGTCAACA---------ACACAATTTGCTCAGTTCAATAAGGTAAACTATTAA----TTGAAGCTGATT-GAG-TTTTT-----------------TCGTTCT-AGTAATAGAGTTTTCCAATTACGGTTGACTCTTTAAAGTGTTT--ACCCCTAAGTATAATATCGTTCAAGGT-------------------------------G----------------------------------------------------AA------------------AGAAAATATT---TTT-AAATTATAGGATGCATAAATTTTTT---------------GG--CTTAAGTTTTCT--------------------------------------------------------------------------------------TACAATTATTTCTA-------------AATAAACATAACT------------------AAATTGT--T-TTCAAAT-----AAAAAAAATTAATAGCT---------------------------------------ATTGCT--------------------------GASizeHit CountTotal NormTotal
No Reads
droFic1
ATGCCGGTCGATAT---CTACAGTCAACC---------TCACAATTTGCTCAGTTCAATAAGGTAAACTATTAA----TTGGCGTTGATT-GGA-TTTTC-----------------TCATTCT-CGCAATCGAGTTTTCCAGCCACACTAACCTAT-----------------------------------AAGG--------------------------------G----------------------------------------------------TAAAA-----------------ACAATATT---TT-AA--------CAT--------ATT-TAACCTCGAG-------------------------------------------------------------------------------------AAACATTG-AT--------------------------------------------AA----------------------------------------------------------------ATTTTAGAAGTTTAACC--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGCCGGTCGATAT---ATGCAGTCAACA---------GCACACATTGCTCAGTTCCAGAAGGTAAACTATCAA----AT-----TGATT-GGA-TTTTTCCCTTGACGAGATTTTTCCATTGC-CGCAATAGAGTTTTCCAATTAACACTTTGCCG-----------------------------------GCTGTGAAATAAGTGAATGTTCTGTCATTCGTGAGAGTGAACTCAAGGTTTAAATAAAATTAAATATGCCTATTAGGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATTATTCA-------------ATTCAGCCGTAGCTACAAAGTTTTTTAAACGAAAATGTATT-GTAAAGT-----AAACCAAATTAAT----------------------TC-------------------GGTCTT--------------------------TASizeHit CountTotal NormTotal
No Reads
droAna3
ATGCCGGTCGATAT---CTGCAGTCAACA---------AATAAATT---TCAGTTCAATAAGGTAAATTATGGA----TTGAAAGTAATT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................AGTCAACA---------AATAAATT---TCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........ATAT---CTGCAGTCAACA---------AATAAATT---TCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..GCCGGTCGATAT---CTGCAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
ATGCCGGTCGATAT---TTGCAGTCAACA---------ACACAATTTGCTCGGTTCAATAAGGTAAACTATTGA----TTGAAAGTAATT-GGC-CTT--------------------CATGCCCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATGCCGGTCGATAT---TTGTAGTCAACC---------CCACACTTTGCTCAGTACAAGAAGGTAAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..GCCGGTCGATAT---TTGTAGTCAACC---------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..GCCGGTCGATAT---TTGTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................ACACTTTGCTCAGTACAAGAAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....CGGTCGATAT---TTGTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000001
.........................................CACTTTGCTCAGTACAAGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
ATGCCGGTCGATAT---TTGTAGTCAACC---------CCACACTTTGCTCAGTACAAGAAGGTAAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........ATAT---TTGTAGTCAACC---------CCACACTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................AGTCAACC---------CCACACTTTGCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................GTCAACC---------CCACACTTTGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
ATGCCCGTTGAAAT---TTTTAATCAACAACAACAACCGCACAATTTGCTTAGTTCAATAAGGTAAATCATTAATTAATTGATTTTTATT-GAA-TTTTC-----------------C-----------------------AATTGCTG--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................AACAACAACCGCACAATTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.TGCCCGTTGAAAT---TTTTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
....................................CCGCACAATTTGCTTAGTTCAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.............................ACAACAACCGCACAATTTGCTTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...............................AACAACCGCACAATTTGCTTAGTTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
ATGCCGGTCGATAT---TTGCAGTCAGCA---------GCACAATATGATTAGCTCAATAAGGTAAAGCCCATA----TAGATTTTTATT-GAC-TTTCT-----------------CAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................GCA---------GCACAATATGATTAGCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.................TTGCAGTCAGCA---------GCACAATATGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000001000000000000000000000000000000000000000000000000000000
...........................................ATATGATTAGCTCAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................TTGCAGTCAGCA---------GCACAATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........CGATAT---TTGCAGTCAGCA---------GCACAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
................................................ATTAGCTCAATAAGGTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.TGCCGGTCGATAT---TTGCAGTCAGCA---------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
........CGATAT---TTGCAGTCAGCA---------GCACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........GATAT---TTGCAGTCAGCA---------GCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................ATGATTAGCTCAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
ATGCCGGTCGACAT---TTGCAGTCAGCAGCAGCA---TACAAATATGATAAGCTCCCTAAGGTAAAGCCCCTA----T------------------------------------------------------------CAAATTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..GCCGGTCGACAT---TTGCAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
............AT---TTGCAGTCAGCAGCAGCA---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........CGACAT---TTGCAGTCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................CAAATATGATAAGCTCCCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................AGTCAGCAGCAGCA---TACAAATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
ATGCCGGTCGATAT---TTGCAGTCAACA---------GCACAGCTTGATTAAGCCAATAAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........GATAT---TTGCAGTCAACA---------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220

Generated: 05/18/2015 at 10:47 PM