ID:

dsi_21694

Coordinate:

3r:4388907-4388970 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-5.5	-5.5	-5.4

Flybase annnotation

exon [3r_4388827_4388906_+]; CDS [3r_4388827_4388906_+]; CDS [3r_4388971_4389142_+]; exon [3r_4388971_4389142_+]; intron [3r_4388907_4388970_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------################################################## GGACATGCAGCAGCAGCATCCGCAGGGCTATGCCTCCAGGCGTTCGCAAGGTAAGTGCTTTGTGTCAACCCTGACTTCCTGGTGACTCATATCAACATCCTTCTAACCTGACAGACTCCTGCAATCAGTATAAGGAATCGGGCAAGTCAAGCGACTCTAGTCTG ************************************************...((((((....((((....)))).....))).)))...........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...............................................................................................................................GTATAAGGAATCGGGCAAGTCAAGCGAC.........	28	0	1	1.00	1	0	0	1	0
........AGCAGCAGCATCCGCAGGGCT.......................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................GTAAGTGCTTTGTGTCAACC..............................................................................................	20	0	1	1.00	1	1	0	0	0
.........................................................................ACTTCCTGGGGACTGATATAA......................................................................	21	3	1	1.00	1	0	1	0	0
..........................................................................CTTCCTGGGGACTGATATAA......................................................................	20	3	2	0.50	1	0	1	0	0
....................................CTGGCGTTCGCAAGG.................................................................................................................	15	1	4	0.25	1	0	0	0	1
..........................................................................CTTCCTGGGGACTGATATTA......................................................................	20	3	6	0.17	1	0	1	0	0
........................................................................GACTTCCTGGAGACT.............................................................................	15	1	12	0.08	1	0	0	0	1
...................................................TAAGTGCTTTGTTTGAA................................................................................................	17	2	20	0.05	1	0	0	1	0

Anti-sense strand reads

CCTGTACGTCGTCGTCGTAGGCGTCCCGATACGGAGGTCCGCAAGCGTTCCATTCACGAAACACAGTTGGGACTGAAGGACCACTGAGTATAGTTGTAGGAAGATTGGACTGTCTGAGGACGTTAGTCATATTCCTTAGCCCGTTCAGTTCGCTGAGATCAGAC ************************************************...((((((....((((....)))).....))).)))...........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body
...............................................................................................GTAGGAAAATTGGAAGGTC..................................................	19	3	20	1.15	23	0	0	0	11	11	0	0	1
................................................TCCATTCACGAAACACAGTTG...............................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.........CGCAGTCGTAGGCGTCCC.........................................................................................................................................	18	2	6	0.83	5	4	0	1	0	0	0	0	0
.....................................................................................................AGAATGGACTCTCTGAGGAT...........................................	20	3	2	0.50	1	1	0	0	0	0	0	0	0
..............................................................................................................TGTCTGAGGAGGTTTGTCA...................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0
............AGTCGTAGGCGTCCC.........................................................................................................................................	15	1	19	0.26	5	5	0	0	0	0	0	0	0
......................................................................................GGTATAGTTGTAAGAAGA............................................................	18	2	6	0.17	1	0	0	0	0	0	0	1	0
................................................................GGTTGGGACTGATGGAC...................................................................................	17	2	8	0.13	1	0	0	0	0	0	1	0	0
..............................................................AAAGTTGGGACTGAA.......................................................................................	15	1	10	0.10	1	0	0	0	0	0	1	0	0
........................................................................................TAGAGTTGTAGGACGAT...........................................................	17	2	20	0.05	1	0	0	0	0	0	0	1	0
........................................................................................................TTGGACTGTCACAGGA............................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0

Generated: 04/24/2015 at 05:07 AM