ID:

dsi_21684

 Coordinate:

2r:18547249-18547513 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.0 -12.9 -12.4 -12.3

Flybase annnotation

Antisense to five_prime_UTR [2r_18547155_18547254_+]; Antisense to exon [2r_18547155_18547254_+]; Antisense to intron [2r_18547255_18547951_+]; five_prime_UTR [2r_18546949_18547585_-]; exon [2r_18546949_18547585_-]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

#############################################################################################################################################################################################################################################################################################################################################################################
TAAATTCATTGTTTTCTCGACCGATTGCAAGGAAAATCTGGATATCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCAGAAATCGAAGTGAATAGGCGATTCGTGAAGTTGTAGATACACCTTGCAGAACGCGAAAATCGCACTGAATCAGAAGTGCAGCAGTGTGTGCGTGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGTTTGTGTAAAAATGAAAATCAGTTGGATTTGTATCGTCGTTGTACGTCTTTTAGGCATTTAGCCAGGCTTTTACACATTTCTACAATTCTTACCAACAGTGGGAGGGACTTTCCCCCCGCACTCACAGGACACGATACACATCACATAC
********************************************************************************************************.((...((((((...........(((...((((...)))).))).........))))))...))***************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...ATTCATTGTTTTCTCGAC........................................................................................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATAGGCGATTCGTGAAGTTGG.......................................................................................................................................................................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
............................AAGGAAAATCTGGATATC............................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAATCAGAAGTGCAGCAGTGT..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................AATCGAGGTGAATGGGCGATT..................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATGCTTACAAACAGTGGGA............................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................CGTGAAGTTGTAGATACACCTTGCA............................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................CGATTGCGAAGAAAATCTGGATATCCGTGG.......................................................................................................................................................................................................................................................................................................................... 30 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......CATTGTTTTCTCGACCGA..................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGCAGAACGCGAAAATCGCACTG......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AACGCGAAAATCGCACTGAATC..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TGTAAAAATGAAAATCAGTTGGAC......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TACACCTTGCAGAACGCGAAAATCG.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................TCACAGGACACGATACACATCACCTA. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................GTTGGATTTGTATCGTCGC............................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CATTTAGCCAGGCTTTTACAC......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAATGAAAATCAGTTGGATT........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TACGTGAGTGAGAGTGTGCTGTTT.................................................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........GTTTTCTCGACCGATTGCAAGGAAA.......................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................AAACAATGCTGCAGCGCT................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTGGATTTGTATCGTCGTTG........................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AGGCGATTCGTGAAGTTGTAGATACAC.................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGGATACACCTTGCAGAACGC...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................AATGCTGCAGCGCTAGAAC.............................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................ATAGGCGATTCGTGAAGTTGTAGATA..................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TACGTGAGTGAGAGTGTGCTG..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................AACAGTGGGAGGGACT....................................... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TTTTAGGCATTTAGCCAGGCTTT.............................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTTGTAGATACGCCTTGGA............................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TAGCCGGGCTTTTACACATTT..................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CAGTTGGATTTGTATCGTCGG............................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GCAGTGTGTGCGTGCGTGTA........................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAATGAAAATCAGTTGGATTT....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................AAACAATGCTGCAGCGCTA.................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................CGACCGATTGCAAGGAAAATCTG..................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAAATGAAAATCAGTTGGAT......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGAGAGTGTGCTGTCGCAGTGTGCGTG....................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................GGTAGATAAACAATGCTGCAGCGCT................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................CGATTCGTGAAGTTGTAGT....................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................CGTGAAGTTGTAGATACACCT................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGTAGATACACCTTGCGGAA......................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGTGAGAGTGTGCTGTCGCAG............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................GGAAAATCTGGATATCCG............................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TTTGTGTAAAAATGAAAATCAGTTGGA.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................TCGACCGATTGCAAGGAAAATC....................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................TGCAGCGCTAGAACCAGAAATCGAAGTGA............................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TGCTTACAAACAGTGGGA............................................. 18 2 4 0.50 2 0 0 0 0 0 0 1 0 0 0 1 0 0
..........................................TATCAGTGGTAGATA.................................................................................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................TGGATAACCGTGGTA........................................................................................................................................................................................................................................................................................................................ 15 1 6 0.33 2 0 0 0 0 0 0 0 0 0 0 1 0 1
..............................................................................................................................................................................................................TGTGCGTGTGTCTGTGTAAA........................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................CTTACAAACAGTGGGAGC........................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGAGAGGTGCAGCATTGTGT................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................GTGAATACGCGTTTCGGGA................................................................................................................................................................................................................................................................ 19 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CTGGTTTTGTATCGTCGTTC........................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................ATCTGGATAACTGTGGTA........................................................................................................................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................TCGCACTGAATCACA.................................................................................................................................................................................................................. 15 1 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 2
......................................TGGATATCTATGGTAAATAA................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................CTCACATCACACGATA............ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................AATCTGGGTAGCCGTGAT......................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................TGGAGCCCGAAATCGAAGTG................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTGTTTGTGAAAAAA......................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################################################
ATTTAAGTAACAAAAGAGCTGGCTAACGTTCCTTTTAGACCTATAGGCACCATCTATTTGTTACGACGTCGCGATCTTGGTCTTTAGCTTCACTTATCCGCTAAGCACTTCAACATCTATGTGGAACGTCTTGCGCTTTTAGCGTGACTTAGTCTTCACGTCGTCACACACGCACGCACATGCACTCACTCTCACACGACAGCGTCACACGCACACAAACACATTTTTACTTTTAGTCAACCTAAACATAGCAGCAACATGCAGAAAATCCGTAAATCGGTCCGAAAATGTGTAAAGATGTTAAGAATGGTTGTCACCCTCCCTGAAAGGGGGGCGTGAGTGTCCTGTGCTATGTGTAGTGTATG
*****************************************************************************************************************************************************************************************************.((...((((((...........(((...((((...)))).))).........))))))...))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
.........TCAAAAGAGCTGGCTAACGTT............................................................................................................................................................................................................................................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GGCGTGAGTGTCCTGTGCTGT............ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............AAAGAGCTGGCTAACGGT............................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....AGTAACAAAAGAGCTG........................................................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................TCAACATCTATGTGGAACGTC........................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................TCCGAAAATGTGTAAAGATGT................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............AGAGCTGGCTAACGGT............................................................................................................................................................................................................................................................................................................................................... 16 1 4 0.50 2 0 1 1 0 0 0 0 0 0
....................................................................TCGCGATCTTGGACTT......................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GTGTCCTGTGCTATATGCACT..... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
.........AAAAAAGAGCTGGCCAACGGT............................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0
..................................................................CGTTGCGATCTTGGT............................................................................................................................................................................................................................................................................................ 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.....................................................................CGCGATCTTGGACTT......................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................CGCTCTCCCTGAAAGTGGG................................ 19 3 6 0.17 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TTTTTACTTCTAGTCAAAC........................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0
........AAAAAAAGAGCTGGCCAA................................................................................................................................................................................................................................................................................................................................................... 18 2 16 0.13 2 0 0 1 0 0 0 1 0 0
..................................................................................................CGCTAAGCAATTCAA............................................................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0
............AAAGAGCTGGCCAACGGT............................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0
...............GAGCTGGCTAACGGT............................................................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATAGATGTTAAGAAT......................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AAAAATGTGTTAAGATGTT............................................................... 19 2 10 0.10 1 0 0 0 0 0 1 0 0 0
..................................................................................................CGCTAAGCTCTTCAA............................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................TTAAAAATAGTAGCAACATG........................................................................................................ 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AGAATGGTTTTCACC............................................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1
...............................................................................GGCTTTAGCTTCACT............................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................TATAGATGTTAAGAA.......................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
..................................................................................................CGCTAAGCTCTTCAATATT........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18547199-18547563 - dsi_21684 TAAATTCATTGTTTTCTCGACCGATTGCAAGGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCA-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGATTCGTGAAGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAGTGCA----------GCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTTGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATAC
droSec2 scaffold_9:1320088-1320460 - TAAATTCATTGTTTTCTCGACCGATTGCAAGGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCA-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGATTCGTGAAGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAG-TCAGCTCA-CCTTGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTATAAAAA---TGAAAATCAGTTGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATAC
dm3 chr2R:18009650-18010023 - TAAATTTATTGTTTTCTCGACCGATTGCGAAGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCC----------------------------------------------GGAAATCGAAGTGAAT----------ACGCGTTTCGGGAGGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAG-TCAGCCCA-CCTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATGC
droEre2 scaffold_4845:12148381-12148753 - TAAATTTATTGTTTTCTCAACCGATTGCGAGAAAATCCCAGATA-TCCGTGGCAGATAAACAATGCTGCAGCGCTAGGCCCC-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGGTTCGGGAAGTGGTAGATACACCTTGCACAAC----ACG--------------------AGAATCGCTCTAAATCAAAAG-GCAACCCA-TCTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGCGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAGA---TT-TGTATCGTCGTTTTACGT-CTTTTAGGCATTT----A---------GCCAGACTTTTACACATTTCTACAAT-AGTTCCCAAAAGTGGGAGGGA--CTTTCCCCCCGCGGT-----------CACAGGACACGC------CACACATC--------------------------ACATAC
droYak3 2R:11168365-11168737 + TAAATTTATTGTTTTCTCAACCGATTGCGAGGAATATCCAGATA-TCCGTGGCAGATAAACAATGCTGCAGCGCTAGGCCCC-----------------------------------------------AAAATCGAAGTGAAT----------AGGCGGTTCGGAAAGTGGTAGATACACTTTGCAGAAC----ACA--------------------AGAATAGCACTAAATCAAAAG-GCAGCCCA-ACTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAGA---TT-TGTATCGTCGTTTAATGT-CTTTTAGGCATTT----A---------GCCAGACTTTTACACATTTCTACAAT-AGTTCCCAAAAGTGGGAGGGA--CTTTCCCCCCGCGGC-----------CACAAGACACGC------CACACATT--------------------------ACATAC
droEug1 scf7180000409663:9009-9370 - TAAATTTTTTGTTTTCTCAACTGATTGCGTGGAAAATCGAGATA-TCCGAAGCAGATAAACAATGCTGCAGTGCTAGACCCC-----------------------------------------------TTAATCGAAATAAAT----------AGGCGTTTCGGGAAATATTGGGT--ATCCAACAGAAC----TCA--------------------AAAATTACACAAATCCAAAAG-GCAGCCCA-TCTGGCTGTGTGTGCG--T--GTGTACGTGAGTGAGAGT--GACGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGACAAA---TT-TGTTGTTTCGTTTTACGA-CTTTTAGGCATTT----A---------GCCTGACTTTTACACATTTCTACATT-AATTTG-----TTGGGAGGGG--ATTTCCCGCCACAGG-----------CACAAAACACGA------CGCACACC--------------------------ACATTC
droBia1 scf7180000301754:5149785-5150172 - TAAAT----TGTTTTTTCAAC-GACTGCGAGGAAAATCCTTATAAACCCACGAAAATAAACAATGCTGCAGCGCTAGGCGGC-----------------------------------------------CGAGTCGAGGACCAT----------AGGTGTTTCGTAAAGCGCTGGACT-CCCCCGCAGA-C----CCG--------------------GAAGTCGCACAAAACCCCAAG--CAGCCCA-TCTGGCAATGTGTGTGCGTGTGCGTGAGTGAGCGAGAGTG-GCCGTCGCAGTGTGCGAGTGT------TTGTGTGAAAA---TGAAAATCAGTCAAA---TTCTGC-TCGTCGCCCTACGA-CTTTCAGGCACTT----A---------GCCAGACTTTTACACGTTTCTACAGC-GGCTAGGATCACTGGGAGGGA--CTTCCCCGCG--GGGCA---------CACACCACGCAG------CACACACCACGCACCACACGCCACCCAA-----CAGGCTC
droTak1 scf7180000415243:171476-171870 - TAAATTTTTTGTTTTCTCAACCGATTGCGAGGAAAATCCTGATA-TCCGAAGCAGATAAACAATGCTGCAGCGCTAGGCGCC-----------------------------------------------CAAAACGAGGAATAT----------AGGTGCTTCGGAAGGTTTTGGATATAACCCGCAGACC----CCG--------------------GAAATCGCACAAAATCCAAAT-CCAATCCA-TCTGGCAGTGTGTGTGCGTATGCGAACGTGAGTGAGAGTGT-CCGTCGCAGTGTGCGTGTGTTTGTGTTTGTGTAAAAA---TGAAAATCAGTCAAA---TTTTGC-TCGTCGTTCTACGT-CTTTTAGGCATTT----AG--------GCCAGACTTTTACACATTTCTACAAT-TGCTAGCAATAGTGGGAGGGA--TTTCCCGCC-TGGGG-----------CACAGAACACGGC-----CACACACC-------ACATGCCACATAC-----CACACAC
droEle1 scf7180000491211:434950-435320 - TAAATTTTTTGTTTTCTCAACCGATTGCGACGAAAATCCCGATA-TCCAGAGCAGATAAACGATGCTGCAGCGCTAGGCCGT-----------------------------------------------TAAATCGAAGTAAAT----------TGACGTTTCGGGAAATGTTGGAT--ACCTTAAGGACC----CCG--------------------AGAATCACACGAAATCAAAAG-GCTGCTCA-CCTGCCAGTGTGTGCG--T--GTGTACATGAGTGAGAGTGTGCCGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAAA---TT-TGT-TTGTCGTTCTACGT-CTTTTAGGCATTT----AGGCGAC-CAGCCAGACTTTTACACATTTCTACAAA-TATTCC-AAAACTGGGAGGGA--TTATTC----TGGGG-----------CACATAACACGC------CACGCACC--------------------------ACATAC
droRho1 scf7180000758468:12763-13133 + TAAATTTTTTGTTTTCTCAACCGATTGCGAGGAAAATCCCGATA-TCCAGAGCAGATAAACGATGCTGCGGGTCTAAGCCAC-----------------------------------------------CAAATCGAAGTAAAT----------AGGCGTTTCGGGAAGTGTTGGAT--ACCTCGAGGACC----CTG--------------------AAAATCACACGAAATCAAAAG-GCTGTTCA-CCTGCCAGTGTGTGTG--T--GTGTACATGAGTGAGAGTGTGCCGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAAA---TT-TGT-TTGTCGTTCTACGT-CTTTTAGGCATTT----AGGCAAA-CAGCCAGACTTTTACACATTTATACAAT-TATTCGCAA-ATTGGTAGGGA--TTTTCC----TGAGG-----------CACAGAACACGG------CACGCAAC--------------------------ACATAC
droFic1 scf7180000453858:447532-447886 - TAAATTTTTTGTTTTCTCAACCGATTGCAAAGAAAACCCTTATA-TCCGAAACAAATTTAAGATGCTGCGGCGATAGAACAC-----------------------------------------------TAAATCGA-GTTCAT----------AGTCGTATTGGG-----------ACACCCTAAAGTCC----CCG--------------------AAAACCGCACGAAATCAAAAG-GCTACCCA-TATTGCC-CGTGTTCG--T--GTGTACGTGAGTGAGAGTGTGCCGTCGCAGTGTGCG--TGT------TTGTGTAAAAA---TGAAAATCAGTAAAATCATT-TGT-TAGTCGTTCTACGT-CTTTTAGGCATTT----C---------AACAGGCTTTTACACATTTCTACAAT-TATTAGCAA-GGTGGGTGGGA--TTTCTT----GGGGG-----------AACAGAACACATCA----CACACACT--------------------------ACATAC
droKik1 scf7180000302232:74391-74787 + TAAATTTTTTGTTTTCTCAACCAAAACCGTTGAAAAGCCTAAAA-TCCGGAGCAGATAAACGATGCTGCAACGTTAGATCCCCG---------------------------------------------AAAATAGAAGTAAAT----------AGGCGTTTCGGGAAGTGTTGGAG---CCTCGTAAGACTCCCACG--------------------AAAAGTCTAGCAAATCAAAAG-GC-----------------TGTGTG----TGTGTACGTGAGTGAGAGTGTGCTATCGGAGTGTGCCTGTGT------TTGTGTCCAAA---TGAAAATTAGTCAAA---TT-TTA-TAGTAGTTCTGCGAACAGTTAGGCAGGCAT--ATCTCGGCCCGCCAGACTTTTACACATTTCTACAATTTATTCGCGA-TTTAGGAGCAG--TTGTTGCCCATGGGCAACACGGCATACACGGCACACAA------CACACATC---------ATCATACATACATGTGTACACAC
droAna3 scaffold_13266:11372814-11373168 - TAAATTT-TTGTTTTCTCAAACGATTGCGAGAAAAAGCCTTAAA-ACCGAAGCAGATAAACGATGCTGCGAGGCCAGGGCCC-----------------------------------------------CTAATCGCAGTAACT----------AGCTAATCCGAG---TCGAAAAGCCGTCCTACGGCA-----AC---------------------GAAATCGC-CGAAATCCAGA------------------GCCTGTGAG--TG-ACGTATAGGAGTGAGAGT--GCTGCCTCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATTAATCAAA---TT-TCT-TACTCGTTCTACGA-CT-TTAGGCACTT----TTGCAATTTAGCCAGACCCTAACACACTTCCACATT-TACTTGCTA-GCTA---GGGACACTTGCTCG----TTG-----------CACAGCACACGACACTGAAAGACACT-----------------C-------GACAC-C
droBip1 scf7180000396547:1091964-1092317 + TAAATTT-TTGTTTTCTCAAACGATTGCGAGAAAAAGCCTTAAT-ACCGAAGCAGATAAACGATGCTGCGCGGCCAGGGCCC-----------------------------------------------CTAATCGAAGTAATT----------AGCTAATCCGATA-----------------------------CGAAAAGCCATCCTACGGCAACGATATCAC-CGAATTCCAT------------------AGCCTGTGAG--TG-ACGTACAGAAGTGAGAGT--GCTACCTCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATTAATCAAA---TT-TCT-TACTCGTTCTACGA-CT-TTAGGCACAT----TTGCAATTTAGCCAGACCCTAACACACTTCCACAAT-CACTTGGTA-GCTA---GGGACACTTGCT---CGTTTG-----------CACAGTACACACCATTGAAACACTTG--------------------------ACAC-C
dp5 3:19350446-19350784 + TAAATTTTGTTGCTTCTCGAA-GTTTGCAACGAAAATCCATAGA-TTCGCAGATCATAAA-AATGTTGCAGCGTTAGTCCCTCGCCCAGGCAACAATCATAGCGAGATGTGCTAAGAAAACGAGCAGCGGGAAACGAAGTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GATTGCTCTTTATGTGGTTGTG--TGCGTG-ATGTGAGTGAGAGT--TCTGGTGTAGTGTGCGTGTGT------TTGTGTAAAACCACAAAAAAATAGTCAAA---TT-TGT-TATTTATTGTAGTT-TTTTTCGGCTTCT-CTTAC--------ACTAAACCTTTGCAT----------T-TATTCGC------------GA--TCATCC----GTTGG-----------CACAAAACACAT-------------T--------------------------ACA---
droPer2 scaffold_37:350174-350462 + TAAATTTTGTTGCTTCTCGAA-GTTTGCAACGAAAATCCATAGA-TTCGCAGATCATAAA-AATGTTGCAGCGTTAGTCCCTCGCCCAGGCAACAATCATAGCGAGATGTGCTAAGAAAACGAGCAGCGGGAAACGAAGTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GATTGCTCTTTATGTGGTTGTG--TGCGTG-ATGTGAGTGAGAGT--TCTGGTGTAGTGTGCGTGTGT------TTGGGTAAAACCACAAAAAAATAGTCAAA---TT-TGT-TATTTATTGTAGTT-TTTTTCGGCTT----------------------CTTTTACAC-----------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAATTCATTGTTTTCTCGACCGATTGCAAGGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCA-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGATTCGTGAAGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAGTGCA----------GCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTTGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...ATTCATTGTTTTCTCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
..............................................................................................................................................AT----------AGGCGATTCGTGAAGTTGG.......................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
............................AAGGAAAATCTGGATA-TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................................................................................................GAATCAGAAGTGCA----------GCAGTGT................................................................................................................................................................................................................................................................................2111.00100001000000000000
..................................................................................................................................................................CGTGAAGTTGTAGATACACCTTGCA.........................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
......CATTGTTTTCTCGACCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................................................................................................................................................................................TGCAGAAC----GCG--------------------AAAATCGCACTG..............................................................................................................................................................................................................................................................................................................2311.00110000000000000000
............................................................................................................................................................................................AAC----GCG--------------------AAAATCGCACTGAATC..........................................................................................................................................................................................................................................................................................................2211.00100001000000000000
................................................................................................................................................................................................................................................................................................................................TGTAAAAA---TGAAAATCAGTTGGA---C......................................................................................................................................................................................2411.00110000000000000000
................................................................................................................................................................................TACACCTTGCAGAAC----GCG--------------------AAAATCG...................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................GTTGGA---TT-TGTATCGTCGC.........................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CATTT----A---------GCCAGGCTTTTACAC.......................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................AAAA---TGAAAATCAGTTGGA---TT-....................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................TACGTGAGTGAGAGTGTGCTGTTT...........................................................................................................................................................................................................................................2411.00100000000000001000
..........GTTTTCTCGACCGATTGCAAGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.........................................................AAACAATGCTGCAGCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTGGA---TT-TGTATCGTCGTTG.......................................................................................................................................................................2011.00100000000000001000
..........................................................................................................................................................AGGCGATTCGTGAAGTTGTAGATACAC...............................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.............................................................AATGCTGCAGCGCTAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
..............................................................................................................................................AT----------AGGCGATTCGTGAAGTTGTAGATA..................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.................................................................................................................................................................................................................................................................................TACGTGAGTGAGAGTGTGCTG..............................................................................................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGGAGGGA--CT..................................................................................1611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGCATTT----A---------GCCAGGCTTT............................................................................................................................2311.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................CAGTTGGA---TT-TGTATCGTCGG.........................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................GCAGTGTGTGCG--TGCGTGTA.................................................................................................................................................................................................................................................................2011.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................AAA---TGAAAATCAGTTGGA---TT-T...................................................................................................................................................................................2111.00100000010000000000
.........................................................AAACAATGCTGCAGCGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.................CGACCGATTGCAAGGAAAATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................AAAAA---TGAAAATCAGTTGGA---T......................................................................................................................................................................................2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................TGAGAGTGTGCTGTCGCAGTGTGCGTG................................................................................................................................................................................................................................2711.00100000010000000000
..................................................GGTAGATAAACAATGCTGCAGCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.............................................................................................................................................................CGATTCGTGAAGTTGTAGT....................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................................................................................................CGTGAAGTTGTAGATACACCT.............................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................................................................AGTGAGAGTGTGCTGTCGCAG........................................................................................................................................................................................................................................2111.00100000000000010000
..............................GGAAAATCTGGATA-TCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................T------TTGTGTAAAAA---TGAAAATCAGTTGGA---.......................................................................................................................................................................................2711.00100000001000000000
................TCGACCGATTGCAAGGAAAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..................................................................TGCAGCGCTAGAACCA-----------------------------------------------GAAATCGAAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
droSec2
TAAATTCATTGTTTTCTCGACCGATTGCAAGGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCA-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGATTCGTGAAGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAG-TCAGCTCA-CCTTGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTATAAAAA---TGAAAATCAGTTGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................CGTGTACGTGAGTGAGAGTG...................................................................................................................................................................................................................................................2012.0020002
...................................ATCTGGATA-TCCGTGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................CGTGTACGTGAGTGAGAG.....................................................................................................................................................................................................................................................1811.0011000
...............................................................................................................................................T----------AGGCGATTCGTGAAGTTGT.......................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...............................................CGTGGTAGATAAACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
........................................................................................................................................................................................................................................................................................................................................................GA---TT-TGTATCGTCGTTGTA.....................................................................................................................................................................1911.0010100
........................................................................................................................................................................................................................................................................G--TGCGTGTACGTGAGTGAGAGT....................................................................................................................................................................................................................................................2211.0010100
.......................ATTGCAAGGAAAATCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..........................................................................................................................................................................TGTAGATACACCTTGCAGAAC----GC...............................................................................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................................................................................................................................................................CTGTCGCAGTGTGCGTGTGT------TTGTA..................................................................................................................................................................................................................2511.0010010
................................................................................................................................................................................................................................................................................................GTGCTGTCGCAGTGTGCGT.................................................................................................................................................................................................................................1911.0010010
............................................................................GAACCA-----------------------------------------------GAAATCGAAGTGAAT----------AG........................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACCAACAGTGGGAGG........................................................................................1811.0010010
..........................GCAAGGAAAATCTGGATA-TCCGTGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
......................................................................................................................................CGAAGTGAAT----------AGGCGATTC.................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAGTGGGAGGGA--CTT.................................................................................2111.0011000
.................................................TGGTAGATAAACAATGCTGCAGCGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
.................................................................CTGCAGCGCTAGAACCA-----------------------------------------------GAAATCGA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
TAAATTTATTGTTTTCTCGACCGATTGCGAAGAAAATCTGGATA-TCCGTGGTAGATAAACAATGCTGCAGCGCTAGAACCC----------------------------------------------GGAAATCGAAGTGAAT----------ACGCGTTTCGGGAGGTTGTAGATACACCTTGCAGAAC----GCG--------------------AAAATCGCACTGAATCAGAAG-TCAGCCCA-CCTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCGGA---TT-TGTATCGTCGTTGTACGT-CTTTTAGGCATTT----A---------GCCAGGCTTTTACACATTTCTACAAT-TCTTACCAACAGTGGGAGGGA--CTTTCCCCCCGCACT-----------CACAGGACACGA------TACACATC--------------------------ACATGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................ACCGATTGCGAAGAAAATCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ACGCGTTTCGGGAGGTTG........................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AATCAGTCGGA---TT-TGTATCGT............................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGCAGTGTGCGTGTGT------TTGTG..................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000010000000
......TATTGTTTTCTCGACCGATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......ATTGTTTTCTCGACCGATTGCGAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.............................................TCCGTGGTAGATAAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTGAGTGAGAGTGTGCTGTCGCAGTG......................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GACCGATTGCGAAGAAAATCTGGATA-TCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AGATACACCTTGCAGAAC----GCG--------------------A.........................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
.............................................................................................................................................................................................................................................................GCAGTGTGTGCG--TGCGTGTACG...............................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................TGTGCTGTCGCAGTGTGCGTG................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATCTGGATA-TCCGTGGTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TCGTTGTACGT-CTTTTAGGCATTT----................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATTGTTTTCTCGACCGATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000
.............................................TCCGTGGTAGATAAACAATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
...................ACCGATTGCGAAGAAAATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................ACCGATTGCGAAGAAAATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAATCTGGATA-TCCGTGGTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCAGCGCTAGAACCC----------------------------------------------GGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AT----------ACGCGTTTCGGGAGGTTG........................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................GTGTGCTGTCGCAGTGTGCGT.................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..........................................................................................................................................................ACGCGTTTCGGGAGGTTGTA......................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GAGTGTGCTGTCGCAGTG......................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................C----------------------------------------------GGAAATCGAAGTGAAT----------A.........................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGTTTCGGGAGGTTGTAGA....................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACCGATTGCGAAGAAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000
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droEre2
TAAATTTATTGTTTTCTCAACCGATTGCGAGAAAATCCCAGATA-TCCGTGGCAGATAAACAATGCTGCAGCGCTAGGCCCC-----------------------------------------------GAAATCGAAGTGAAT----------AGGCGGTTCGGGAAGTGGTAGATACACCTTGCACAAC----ACG--------------------AGAATCGCTCTAAATCAAAAG-GCAACCCA-TCTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGCGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAGA---TT-TGTATCGTCGTTTTACGT-CTTTTAGGCATTT----A---------GCCAGACTTTTACACATTTCTACAAT-AGTTCCCAAAAGTGGGAGGGA--CTTTCCCCCCGCGGT-----------CACAGGACACGC------CACACATC--------------------------ACATACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................GAAT----------AGGCGGTTCGGGAAGT..........................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..........................................................................................................................................GTGAAT----------AGGCGGTTCGGGAAGTGGT.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
................................................................................................................................................................................................................................................................................................................................................ATCAGTCAGA---TT-TGTATCGT............................................................................................................................................................................2011.0010000010
...................ACCGATTGCGAGAAAATCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..............................GAAAATCCCAGATA-TCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
...........................................................................................................................................................GGCGGTTCGGGAAGTGGTA......................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
................................................................................................................................................................................................................................................................................GTACGTGAGTGAGAGCGTGCTGTC............................................................................................................................................................................................................................................2411.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGT-----------CACAGGACACGC------CACACA..................................2411.0011000000
droYak3
TAAATTTATTGTTTTCTCAACCGATTGCGAGGAATATCCAGATA-TCCGTGGCAGATAAACAATGCTGCAGCGCTAGGCCCC-----------------------------------------------AAAATCGAAGTGAAT----------AGGCGGTTCGGAAAGTGGTAGATACACTTTGCAGAAC----ACA--------------------AGAATAGCACTAAATCAAAAG-GCAGCCCA-ACTGGCAGTGTGTGCG--TGCGTGTACGTGAGTGAGAGTGTGCTGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAGA---TT-TGTATCGTCGTTTAATGT-CTTTTAGGCATTT----A---------GCCAGACTTTTACACATTTCTACAAT-AGTTCCCAAAAGTGGGAGGGA--CTTTCCCCCCGCGGC-----------CACAAGACACGC------CACACATT--------------------------ACATACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................ATCAGTCAGA---TT-TGTATCGT............................................................................................................................................................................2012.00200000020000
..........GTTTTCTCAACCGATTGCGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
..........................................................................................................................................................................GGTAGATACACTTTGCAGAAC----AC...............................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................TTCGGAAAGTGGTAGATACA................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
........................................................................................................................................................................................................................................................................................GTGAGAGTGTGCTGTCGCAGTG......................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................GATACACTTTGCAGAAC----AC...............................................................................................................................................................................................................................................................................................................................................1911.00110000000000
...............................................................................................................................................................................................................................................................................................................................................AATCAGTCAGA---TT-TGTATCGT............................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................GA---TT-TGTATCGTCGTTTAAT....................................................................................................................................................................2011.00100000010000
......................................................................................................................................................................................TTGCAGAAC----ACA--------------------AGAATAGCACC...............................................................................................................................................................................................................................................................................................................2311.00100100000000
...............................................................................................................................................................................................................................................................................................................................................AATCAGTCAGA---TT-TGTATCGTCGTTTAA.....................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................GTGGTAGATACACTTTGCAGAAC----.................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................TTGCAGAAC----ACA--------------------AGAATAGC..................................................................................................................................................................................................................................................................................................................2011.00110000000000
..........................................................................................................................................................................................................................................................................................GAGAGTGTGCTGTCGCAGTG......................................................................................................................................................................................................................................2011.00100001000000
................................................................................................................................................................................................................................GCACTAAATCAAAAG-GCAGCCCA-ACT........................................................................................................................................................................................................................................................................................2611.00101000000000
.....................................................................................................................................................................................TTTGCAGAAC----ACA--------------------AGAATAGC..................................................................................................................................................................................................................................................................................................................2111.00100100000000
.....................................................................................................................................................................................................................................................................................................GTCGCAGTGTGCGTGTGT------TTGTGTAAAA.............................................................................................................................................................................................................2811.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAT-AGTTCCCAAAAGTGGGAGG........................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................TACGTGAGTGAGAGTGTGCT...............................................................................................................................................................................................................................................2011.00100100000000
............................................................................................................................................GAAT----------AGGCGGTTCGGAAAGT..........................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--CTTTCCCCCCGCGGC-----------CACA......................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................CAGTCAGA---TT-TGTATCGTCGTTTAAT....................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................AGTCAGA---TT-TGTATCGTCGTTTAAT....................................................................................................................................................................2511.00100000010000
droEug1
TAAATTTTTTGTTTTCTCAACTGATTGCGTGGAAAATCGAGATA-TCCGAAGCAGATAAACAATGCTGCAGTGCTAGACCCC-----------------------------------------------TTAATCGAAATAAAT----------AGGCGTTTCGGGAAATATTGGGT--ATCCAACAGAAC----TCA--------------------AAAATTACACAAATCCAAAAG-GCAGCCCA-TCTGGCTGTGTGTGCG--T--GTGTACGTGAGTGAGAGT--GACGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGACAAA---TT-TGTTGTTTCGTTTTACGA-CTTTTAGGCATTT----A---------GCCTGACTTTTACACATTTCTACATT-AATTTG-----TTGGGAGGGG--ATTTCCCGCCACAGG-----------CACAAAACACGA------CGCACACC--------------------------ACATTCSizeHit CountTotal NormTotal
No Reads
droBia1
TAAAT----TGTTTTTTCAAC-GACTGCGAGGAAAATCCTTATAAACCCACGAAAATAAACAATGCTGCAGCGCTAGGCGGC-----------------------------------------------CGAGTCGAGGACCAT----------AGGTGTTTCGTAAAGCGCTGGACT-CCCCCGCAGA-C----CCG--------------------GAAGTCGCACAAAACCCCAAG--CAGCCCA-TCTGGCAATGTGTGTGCGTGTGCGTGAGTGAGCGAGAGTG-GCCGTCGCAGTGTGCGAGTGT------TTGTGTGAAAA---TGAAAATCAGTCAAA---TTCTGC-TCGTCGCCCTACGA-CTTTCAGGCACTT----A---------GCCAGACTTTTACACGTTTCTACAGC-GGCTAGGATCACTGGGAGGGA--CTTCCCCGCG--GGGCA---------CACACCACGCAG------CACACACCACGCACCACACGCCACCCAA-----CAGGCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TAAATTTTTTGTTTTCTCAACCGATTGCGAGGAAAATCCTGATA-TCCGAAGCAGATAAACAATGCTGCAGCGCTAGGCGCC-----------------------------------------------CAAAACGAGGAATAT----------AGGTGCTTCGGAAGGTTTTGGATATAACCCGCAGACC----CCG--------------------GAAATCGCACAAAATCCAAAT-CCAATCCA-TCTGGCAGTGTGTGTGCGTATGCGAACGTGAGTGAGAGTGT-CCGTCGCAGTGTGCGTGTGTTTGTGTTTGTGTAAAAA---TGAAAATCAGTCAAA---TTTTGC-TCGTCGTTCTACGT-CTTTTAGGCATTT----AG--------GCCAGACTTTTACACATTTCTACAAT-TGCTAGCAATAGTGGGAGGGA--TTTCCCGCC-TGGGG-----------CACAGAACACGGC-----CACACACC-------ACATGCCACATAC-----CACACACSizeHit CountTotal NormTotal
No Reads
droEle1
TAAATTTTTTGTTTTCTCAACCGATTGCGACGAAAATCCCGATA-TCCAGAGCAGATAAACGATGCTGCAGCGCTAGGCCGT-----------------------------------------------TAAATCGAAGTAAAT----------TGACGTTTCGGGAAATGTTGGAT--ACCTTAAGGACC----CCG--------------------AGAATCACACGAAATCAAAAG-GCTGCTCA-CCTGCCAGTGTGTGCG--T--GTGTACATGAGTGAGAGTGTGCCGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAAA---TT-TGT-TTGTCGTTCTACGT-CTTTTAGGCATTT----AGGCGAC-CAGCCAGACTTTTACACATTTCTACAAA-TATTCC-AAAACTGGGAGGGA--TTATTC----TGGGG-----------CACATAACACGC------CACGCACC--------------------------ACATACSizeHit CountTotal NormTotal
No Reads
droRho1
TAAATTTTTTGTTTTCTCAACCGATTGCGAGGAAAATCCCGATA-TCCAGAGCAGATAAACGATGCTGCGGGTCTAAGCCAC-----------------------------------------------CAAATCGAAGTAAAT----------AGGCGTTTCGGGAAGTGTTGGAT--ACCTCGAGGACC----CTG--------------------AAAATCACACGAAATCAAAAG-GCTGTTCA-CCTGCCAGTGTGTGTG--T--GTGTACATGAGTGAGAGTGTGCCGTCGCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATCAGTCAAA---TT-TGT-TTGTCGTTCTACGT-CTTTTAGGCATTT----AGGCAAA-CAGCCAGACTTTTACACATTTATACAAT-TATTCGCAA-ATTGGTAGGGA--TTTTCC----TGAGG-----------CACAGAACACGG------CACGCAAC--------------------------ACATACSizeHit CountTotal NormTotal
No Reads
droFic1
TAAATTTTTTGTTTTCTCAACCGATTGCAAAGAAAACCCTTATA-TCCGAAACAAATTTAAGATGCTGCGGCGATAGAACAC-----------------------------------------------TAAATCGA-GTTCAT----------AGTCGTATTGGG-----------ACACCCTAAAGTCC----CCG--------------------AAAACCGCACGAAATCAAAAG-GCTACCCA-TATTGCC-CGTGTTCG--T--GTGTACGTGAGTGAGAGTGTGCCGTCGCAGTGTGCG--TGT------TTGTGTAAAAA---TGAAAATCAGTAAAATCATT-TGT-TAGTCGTTCTACGT-CTTTTAGGCATTT----C---------AACAGGCTTTTACACATTTCTACAAT-TATTAGCAA-GGTGGGTGGGA--TTTCTT----GGGGG-----------AACAGAACACATCA----CACACACT--------------------------ACATACSizeHit CountTotal NormTotal
No Reads
droKik1
TAAATTTTTTGTTTTCTCAACCAAAACCGTTGAAAAGCCTAAAA-TCCGGAGCAGATAAACGATGCTGCAACGTTAGATCCCCG---------------------------------------------AAAATAGAAGTAAAT----------AGGCGTTTCGGGAAGTGTTGGAG---CCTCGTAAGACTCCCACG--------------------AAAAGTCTAGCAAATCAAAAG-GC-----------------TGTGTG----TGTGTACGTGAGTGAGAGTGTGCTATCGGAGTGTGCCTGTGT------TTGTGTCCAAA---TGAAAATTAGTCAAA---TT-TTA-TAGTAGTTCTGCGAACAGTTAGGCAGGCAT--ATCTCGGCCCGCCAGACTTTTACACATTTCTACAATTTATTCGCGA-TTTAGGAGCAG--TTGTTGCCCATGGGCAACACGGCATACACGGCACACAA------CACACATC---------ATCATACATACATGTGTACACACSizeHit CountTotal NormTotal
No Reads
droAna3
TAAATTT-TTGTTTTCTCAAACGATTGCGAGAAAAAGCCTTAAA-ACCGAAGCAGATAAACGATGCTGCGAGGCCAGGGCCC-----------------------------------------------CTAATCGCAGTAACT----------AGCTAATCCGAG---TCGAAAAGCCGTCCTACGGCA-----AC---------------------GAAATCGC-CGAAATCCAGA------------------GCCTGTGAG--TG-ACGTATAGGAGTGAGAGT--GCTGCCTCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATTAATCAAA---TT-TCT-TACTCGTTCTACGA-CT-TTAGGCACTT----TTGCAATTTAGCCAGACCCTAACACACTTCCACATT-TACTTGCTA-GCTA---GGGACACTTGCTCG----TTG-----------CACAGCACACGACACTGAAAGACACT-----------------C-------GACAC-CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................GTAACT----------AGCTAATCCGAG---TCGAAA.....................................................................................................................................................................................................................................................................................................................................................................2412.002000002
.................................................................................................................................................................................................................................................................................................................................................................CT-TACTCGTTCTACGA-CT-TTAGGCACTT----T...............................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................................AGTGAGAGT--GCTGCCTCAG........................................................................................................................................................................................................................................1911.001000010
..........................................................AACGATGCTGCGAGGCCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................CGATGCTGCGAGGCCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...................................................................................................................................................................GAG---TCGAAAAGCCGTCCTA...........................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................GTAACT----------AGCTAATCCGAG---TCGAA......................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................AGTAACT----------AGCTAATCCGAG---T..........................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................TAAACGATGCTGCGAGGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................................................................................................TCCAGA------------------GCCTGTGAG--TG-ACGT..................................................................................................................................................................................................................................................................2111.001000001
............TTTCTCAAACGATTGCGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
TAAATTT-TTGTTTTCTCAAACGATTGCGAGAAAAAGCCTTAAT-ACCGAAGCAGATAAACGATGCTGCGCGGCCAGGGCCC-----------------------------------------------CTAATCGAAGTAATT----------AGCTAATCCGATA-----------------------------CGAAAAGCCATCCTACGGCAACGATATCAC-CGAATTCCAT------------------AGCCTGTGAG--TG-ACGTACAGAAGTGAGAGT--GCTACCTCAGTGTGCGTGTGT------TTGTGTAAAAA---TGAAAATTAATCAAA---TT-TCT-TACTCGTTCTACGA-CT-TTAGGCACAT----TTGCAATTTAGCCAGACCCTAACACACTTCCACAAT-CACTTGGTA-GCTA---GGGACACTTGCT---CGTTTG-----------CACAGTACACACCATTGAAACACTTG--------------------------ACAC-CSizeHit CountTotal NormTotal
No Reads
dp5
TAAATTTTGTTGCTTCTCGAA-GTTTGCAACGAAAATCCATAGA-TTCGCAGATCATAAA-AATGTTGCAGCGTTAGTCCCTCGCCCAGGCAACAATCATAGCGAGATGTGCTAAGAAAACGAGCAGCGGGAAACGAAGTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GATTGCTCTTTATGTGGTTGTG--TGCGTG-ATGTGAGTGAGAGT--TCTGGTGTAGTGTGCGTGTGT------TTGTGTAAAACCACAAAAAAATAGTCAAA---TT-TGT-TATTTATTGTAGTT-TTTTTCGGCTTCT-CTTAC--------ACTAAACCTTTGCAT----------T-TATTCGC------------GA--TCATCC----GTTGG-----------CACAAAACACAT-------------T--------------------------ACA---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................AAGTAATAATACAAATCTAGG.......................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
.........................................................................................................................................................................................................................................................................................TGAGAGT--TCTGGTGTAGT.......................................................................................................................................................................................................................................1811.0010100000000
........GTTGCTTCTCGAA-GTTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................................TTATGTGGTTGTG--TGCGTG-..................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................AGTGAGAGT--TCTGGTGTAGTG......................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................AAACGAGCAGCGGGAAACGA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................CAAATCTAGGCGCT----------------------------------------------------------------------------------GATTG............................................................................................................................................................................................................................................................................................1911.0010000001000
...............................................................................................................................................................................................................................................................TGTGGTTGTG--TGCGTG-ATGTG.............................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C------------GA--TCATCC----GTTGG-----------CACAA.....................................................1911.0010000100000
.............................................................................................................................................................................................................................................................................................AGT--TCTGGTGTAGTGTGCGT.................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AT----------T-TATTCGC------------GA--TCATCC----GTT.......................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................GAGAGT--TCTGGTGTAGTGTGC...................................................................................................................................................................................................................................2111.0010000000010
............CTTCTCGAA-GTTTGCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................TTGTG--TGCGTG-ATGTGAGTG.........................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................TAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GAT..............................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................AAACGAGCAGCGGGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
...ATTTTGTTGCTTCTCGAA-GTTTGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................AAGAAAACGAGCAGCGGGA................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................TATTGTAGTT-TTTTTCGGCTT......................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGC------------GA--TCATCC----GTTGG-----------CA........................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................TGCGTGTGT------TTGTGTAAAACC...........................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................AGTGTGCGTGTGT------TTGTGT.................................................................................................................................................................................................................1920.5010100000000
droPer2
TAAATTTTGTTGCTTCTCGAA-GTTTGCAACGAAAATCCATAGA-TTCGCAGATCATAAA-AATGTTGCAGCGTTAGTCCCTCGCCCAGGCAACAATCATAGCGAGATGTGCTAAGAAAACGAGCAGCGGGAAACGAAGTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GATTGCTCTTTATGTGGTTGTG--TGCGTG-ATGTGAGTGAGAGT--TCTGGTGTAGTGTGCGTGTGT------TTGGGTAAAACCACAAAAAAATAGTCAAA---TT-TGT-TATTTATTGTAGTT-TTTTTCGGCTT----------------------CTTTTACAC-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................TATTGTAGTT-TTTTTCGGCTT----------------------C...............................................................................................................................2213.003300000
........................................................................................................................................................................................................................................................................................................................................................................TATTGTAGTT-TTTTTCGGCTT----------------------................................................................................................................................2112.002200000
................................................................................................................................................ATACAAATCTAGGCGCT----------------------------------------------------------------------------------GATTGCTCTTT......................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................GTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------GA...............................................................................................................................................................................................................................................................................................2511.001010000
.............................................TTCGCAGATCATAAA-AATGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................TTGTG--TGCGTG-ATGTGAGT..........................................................................................................................................................................................................................................................1911.001000001
......................................................................................................................................................................................................................................................................GTG--TGCGTG-ATGTGAGTGAGAGT--TCT...............................................................................................................................................................................................................................................2611.001000001
................................................................GTTGCAGCGTTAGTCCCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............CTTCTCGAA-GTTTGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
............................................................................................................................................................................................................................................................................................................TGTGCGTGTGT------TTGGGTAA...............................................................................................................................................................................................................1911.001001000
.......TGTTGCTTCTCGAA-GTTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................GTGAGTGAGAGT--TCTGGT............................................................................................................................................................................................................................................1811.001010000
...............................................................TGTTGCAGCGTTAGTCCCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................AAGTAATAATACAAATCTAGGCGCT----------------------------------------------------------------------------------G................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................G--TGCGTG-ATGTGAGTGAGAGT--..................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................G--TGCGTG-ATGTGAGTGAGA......................................................................................................................................................................................................................................................1911.001001000

Generated: 05/19/2015 at 04:42 AM