ID:

dsi_21646

Coordinate:

2r:4797804-4797923 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_4797789_4797803_+]; five_prime_UTR [2r_4797765_4797788_+]; exon [2r_4797765_4797803_+]; exon [2r_4797924_4798207_+]; CDS [2r_4797924_4798207_+]; intron [2r_4797804_4797923_+]

No Repeatable elements found

Sense Strand Reads

-----------#######################################------------------------------------------------------------------------------------------------------------------------################################################## TTTAACTTTTGGGGTGCCAGCATCGTTCCATCGCCATGGTTGTTGTAATGGTGATTTAAAACATCTTCTTGATACTTTCCCCTTCAGCCGGGACGAGTTTGTTGCTTAAGTCTTTCGTTTGCGCTTATTGCAACGTGCTAATCATGTAAATCACTCTGCTTTCCTTACAGCACGTGACTCCGCCAAAAGTCAATGGATGGACCCCACTTCTGATGCTCAT ************************************************((((((((....(((.....)))....((((........))))..(((.((((((.(((((...........)))))..)))))).))).......))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553488 RT_0-2 hours eggs	M053 female body	GSM343915 embryo	SRR902009 testis
...............................AGCCATGGTTGTTGTAA............................................................................................................................................................................	17	1	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................GTCAATGGATGGACCCCACTTCTGATGCG...	29	1	1	1.00	1	1	0	0	0	0
..................AGCATCGTTCCATCCCCATGGTTG..................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	1	0
..........................................................AAACATCTGCTTGAGACTTTCCA...........................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................AATGGATGGACCCCACTTCT.........	20	0	1	1.00	1	1	0	0	0	0
......................................................................GATACTATCCCCTTCAGCTTG.................................................................................................................................	21	3	2	0.50	1	0	0	0	0	1
..........................................TTGTAGTGGTGCTTTAAA................................................................................................................................................................	18	2	11	0.09	1	0	1	0	0	0

Anti-sense strand reads

AAATTGAAAACCCCACGGTCGTAGCAAGGTAGCGGTACCAACAACATTACCACTAAATTTTGTAGAAGAACTATGAAAGGGGAAGTCGGCCCTGCTCAAACAACGAATTCAGAAAGCAAACGCGAATAACGTTGCACGATTAGTACATTTAGTGAGACGAAAGGAATGTCGTGCACTGAGGCGGTTTTCAGTTACCTACCTGGGGTGAAGACTACGAGTA ************************************************((((((((....(((.....)))....((((........))))..(((.((((((.(((((...........)))))..)))))).))).......))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
........................................................................ATGATAGGGGAAGTC.....................................................................................................................................	15	1	3	0.67	2	2	0	0	0	0	0	0
........................................................................................................................TGCGAATAGCGTTGCACG..................................................................................	18	2	2	0.50	1	0	0	1	0	0	0	0
.....................................................................................TCAGACCTGCTTAAACAACGAA.................................................................................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
....................................................................AGCTATGATAGGGGAAGTCGA...................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0
..............ACGGATGTAACAAGGTAGC...........................................................................................................................................................................................	19	3	17	0.35	6	1	0	1	0	2	2	0
.....................................................................GCTATGATAGGGGAAGTCGA...................................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0	0
.......................................................................TATGATAGGGGAAGTCGA...................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0
......................................................................................................................................................AGTGAGACGAAAGCGATG....................................................	18	2	6	0.17	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................TAGGCTACCTACCTGGGGT..............	19	3	20	0.10	2	0	0	1	0	1	0	0
........................................................................................................................................................TGAGACGAAAGAAATCT...................................................	17	2	18	0.06	1	0	0	0	0	0	0	1
...........................................ACAGTACCACTAGATTT................................................................................................................................................................	17	2	19	0.05	1	0	0	0	0	0	0	1
...................................................................AAGCTATGATAGGGGAAGT......................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0

Generated: 04/23/2015 at 05:09 AM