ID:

dsi_21645

 Coordinate:

3r:10227126-10227275 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.8 -3.6 -3.6 -3.6

Flybase annnotation

exon [3r_10227016_10227125_+]; CDS [3r_10227016_10227125_+]; intron [3r_10227126_10228963_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCCCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGGTAAGGATATCAAAGACATTTTCTAAATCCAATGCCAGACACAAAAGTCCGACACCAACATCAGCAGGAAAGTAAACAACACAACAACATCAACAACGAAAATTTTAAAATTAATATATATATATACAAAATGAAAGCACGAACTCAAGAAAAAAAAATAGCAAATGAAATCTGATCGCAACATCCAAAAACGAACTCAA
**************************************************..................((.......(((...((..(((......)))..............)).)))))********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 GSM343915
embryo
 M023
head
 M053
female body
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................GAGGACAAGCTGCTGGCTGAGCTC............................................................................................................................................................................................................... 24 0 1 9.00 9 6 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATCTGATCGCAACATCC.............. 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATGAAATCTGATCGCAACATCC.............. 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
......GGAGTACGAGCCAGAGGAC................................................................................................................................................................................................................................. 19 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0
.........GTACGAGCCAGAGGACAAGCT............................................................................................................................................................................................................................ 21 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0
....................................................................................................GACACCAACATCAGCAGGAAA................................................................................................................................. 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAATGAAATCTGATCGCAAC.................. 20 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.......GAGTACGAGCCAGAGGAC................................................................................................................................................................................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAAATGAAATCTGATCGCAACATC............... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAGCAAATGAAATCTGATCGCAAC.................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................CTGAGCTCAACAAGGGTAAGG.................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................AGGACAAGCTGCTGGCTGAGCT................................................................................................................................................................................................................ 22 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
.............................TGCTGGCTGAGCTCAACAAGGCT...................................................................................................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...................GAGGACAAGCTGCTGGCTG.................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........AGTACGAGCCAGAGGACA................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAATAGCAAATGAAATCTGATCGC..................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................CTGAGCTCAACAAGGGTAAG................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCAAATGAAATCTGATCGCAAC.................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................CCAGAGGACAAGCTGCTG........................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................GTAAGGATATCAAAGACATTTT.................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......GAGTACGAGCCAGAGGACA................................................................................................................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CACGAACTCAAGAAAAAAAAATAG....................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATGAAATCTGATCGCAACAT................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......GGAGTACGAGCCAGAGGACA................................................................................................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
GCCCCTGGAGTACGAGCCAGAG.................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCACGAACTCAAGAAAAAAAAATAGC...................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCACGAACTCAAGAAAAAAA............................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATGAAAGCACGAACTCAAG................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................GCTGCTGGCTGAGCTCAACAAGGCT...................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................AACAAGGGTAAGGATATC............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAATAGCAAATGAAATCTGATC....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................CTGAGCTCAACAAGGGCAAG................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AGCTGCTGGCTGAGCTCAACAAGGC....................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........GTACGAGCCAGAGGACAAGCTG........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................AGAGGACAAGCTGCTGGC...................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTAAACAACACAACAACATCAACAACGA..................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................GGCTGAGCTCAACAAGGGTAAGG.................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGAAATCTGATCGCAACA................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................CATCAGCAGGAAAGTAAAC........................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................CTGAGCTCAACAAGGGGAAGG.................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........AGTACGAGCCAGAGGACAAG.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCAAATGAAATCTGATCGC..................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAAATGAAATCTGATCGC..................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAATAGCAAATGAAATCTGATCGCAAC.................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATCTGATCGCAACATCCAAA........... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................GGACAAGCTGCTGGCTGAG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................TGCTGGCTGAGCTCAACAAGGC....................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CAGGAAAGTAAACAACACAAC................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................AGAGGACAAGCTGCTGGCTG.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................AGGACAAGCTGCTGGCTGAGCTC............................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................CAAAAGTCCGACACCAACATC.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATGAAATCTGATCGCAAC.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCACGAACTCAAGAAAAAAAAAT......................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GCTGAGCTCAACAAGGCT...................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........GTACGAGCCAGAGGACAAGCTGCTGGCT..................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAACATCAGCAGGAAAGT............................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........AGTACGAGCCAGAGGACAA............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................AGAGGACAAGCTGCTGGCTGA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................GCTGAGCTCAACAAGGGTAAGGA................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GCTGAGCTCAACAAGGCTAAGG.................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........ACGAGCCAGAGGACAAGCT............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AATAGCAAATGAAATCTGATCGCAAC.................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATAGCAAATGAAATCTGATCGCAAC.................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AGCTGCTGGCTGAGCTCAACAAGGGT...................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........TACGAGCCAGAGGACAAGCC............................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................TGCTGGCTGAGCTCAACA........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................AGAGGACAAGCTGCTGGCTGAGCTC............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................AGGGTAAGGATATCAAAGACA...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................GACACCAACATCAGCAGGAAAGT............................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................CAGAGGACAAGCTGCTGGCTG.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................GACAAGCTGCTGGCTGAGC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................GGCTGAGCTCAACAAGGGGAAGG.................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................GAGGACAAGCTGCTGGCTGAGC................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........ACGAGCCAGAGGACAAGCTGCTGG....................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATACAAAATGAAAGCACGAACT....................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GCTGAGCTCAACAAGGGTAAGG.................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................GACAAGCTGCTGGCTGAGCTC............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................AGAGGACAAGCTGCTGGCTGAGCT................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................CATCCAAAAACGAACTCAA 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................CCGACACCAACATCAGCA...................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................CAAGGGTAAGGATATCAAAGACAT..................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAAATCTGATCGCAACATCC.............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................GAGGACAAGCTGCTGGCT..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................ACGAACTCAAGAAAAAAAAATAGC...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AGCTGCTGGCTGAGCTCA.............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GCAAATGAAATCTGATCGCA.................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........GTACGAGCCAGAGGACAA............................................................................................................................................................................................................................... 18 0 2 1.00 2 0 1 0 1 0 0 0 0 0 0
...................CAGGACAAGCTGCTGGCT..................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............CGAGCCAGAGGACAAGCT............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATGAAATCTGATCGCAACATC............... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................GCTGCTGGCTGAGCTCAACAAGGC....................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................GCTGGCTGAGCTCAACAAGGCT...................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCACGAACTCAAGAAAAAAAAT.......................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AGCTGCTGGCTGAGCTCAACA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AATGAAAGCACGAACTCAAGAAAAAA............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................GGACAAGCTGCTGGCTGAGC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............GAGCCAGAGGACAAGCTGCTGG....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........GTACGAGCCAGAGGACAAG.............................................................................................................................................................................................................................. 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATGAGATCTGATAGCAA................... 18 2 7 0.43 3 0 0 0 0 0 0 0 0 3 0
.................................................GGTTAGGATATGAAAGACA...................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1
........................................................................................ACACTACAGTCCGACA.................................................................................................................................................. 16 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0
..................TGAGGACAAGCTGCTGGTTT.................................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGGGGACCTCATGCTCGGTCTCCTGTTCGACGACCGACTCGAGTTGTTCCCATTCCTATAGTTTCTGTAAAAGATTTAGGTTACGGTCTGTGTTTTCAGGCTGTGGTTGTAGTCGTCCTTTCATTTGTTGTGTTGTTGTAGTTGTTGCTTTTAAAATTTTAATTATATATATATATGTTTTACTTTCGTGCTTGAGTTCTTTTTTTTTATCGTTTACTTTAGACTAGCGTTGTAGGTTTTTGCTTGAGTT
*********************************************************************************************************************************..................((.......(((...((..(((......)))..............)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................................AGACTAGGGTTGTAGGCTTT.......... 20 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................GTGTAGGTTTTTGCTTGAG.. 19 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................AGATTTAGGTTACGGTCTGTGTTTT.......................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................GTTGCAGTTGCTGCGTTTAAAAT............................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0
........................................................TATAGTGTCTGTAAACGATCTA............................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0
..................TCCTCTGCTCGACGACCGACT................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0
....................................ACTCGAGTCGTTCCCAA..................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 1 0 0
..CGGACCTCATGCGCGG........................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................AGGCTGTGGTCGTACT......................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................TATATATAGATATGTTTT..................................................................... 18 1 20 0.05 1 0 0 0 0 0 1 0 0
............................................................GTTTCTTGAAAAGATTTA............................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:38 AM