ID:

dsi_21619

 Coordinate:

3l:7980773-7980922 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7980923_7981127_-]; exon [3l_7980923_7981210_-]; intron [3l_7980443_7980922_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGAGCAGCCTGATGGTGCCAAGAATGAGGCTTCAGTGTCTGCGAATGCAAGTAAGTTTTCCATACGCCAGTGAAAAGTCATTTAGAGGCTCCTCCTTCGGCTGAAAAAATGAGGTTAGGTTTTGTCGGGAACTACAGTCCAACCTCTCTAACTTCAACTTGCTGTGATATTGTAGGAATGTACCTAAATGGCATTCTTTCAATTTTCATTTTCTGTGCAATGACTCCAAGGATTAGTCCTAACAGAAAAA
**************************************************.....................((...(((((((((.......((((.((((((((.....((((((.((..((((........)))).))))))))......))))....)))).........))))......)))))))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
......................AGTGAGGCCTCAGTATCTGC................................................................................................................................................................................................................ 20 3 1 2.00 2 2 0 0 0 0 0
........................TGAGGCTTCAGTGTCTGCGAATGCA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................AGGTTGGGTTTTGTCGGGAATTT.................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0
GGAGCAGCCTGATGGTGCCA...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.....................GAATGAGGCTTCAGTGTCTGCGAA............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
...............TGCCAAGAATGAGGCTTCAGTGTC................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................TAGGTTTAGTCGGGACCT..................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0
......................AGTGAGGCTTCAGGATCTGC................................................................................................................................................................................................................ 20 3 5 0.40 2 2 0 0 0 0 0
.............................................................................................................TGAGGTTAGGTTGTATAGG.......................................................................................................................... 19 3 8 0.25 2 1 0 0 0 1 0
........................TGAGGCCTCAGGGTCTGCT............................................................................................................................................................................................................... 19 3 7 0.14 1 1 0 0 0 0 0
.......................GTGAGGCCTCAGTATCTGC................................................................................................................................................................................................................ 19 3 8 0.13 1 1 0 0 0 0 0
......................AGTGAGGCCTCAGTATCTG................................................................................................................................................................................................................. 19 3 10 0.10 1 1 0 0 0 0 0
...................................................................................................................CAGGTTTAGTCGGGACCT..................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0
...................................................................................................................TAGGGTTAGTCGGGACCT..................................................................................................................... 18 3 14 0.07 1 1 0 0 0 0 0
.....................................................................................................TGAACAAATGAGGTT...................................................................................................................................... 15 1 17 0.06 1 0 0 0 1 0 0
........................TGAGGCCTCAGGATCTGCG............................................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0
..................................................................................................................................ACTACAGTCCGACATC........................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................TGATATTGTAGGATT....................................................................... 15 1 20 0.05 1 0 0 0 1 0 0
..................................................................................................................TTAGGGTTAGTCGGGA........................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0
...........................................................CCATAGGTCAGTGAAA............................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CCTCGTCGGACTACCACGGTTCTTACTCCGAAGTCACAGACGCTTACGTTCATTCAAAAGGTATGCGGTCACTTTTCAGTAAATCTCCGAGGAGGAAGCCGACTTTTTTACTCCAATCCAAAACAGCCCTTGATGTCAGGTTGGAGAGATTGAAGTTGAACGACACTATAACATCCTTACATGGATTTACCGTAAGAAAGTTAAAAGTAAAAGACACGTTACTGAGGTTCCTAATCAGGATTGTCTTTTT
**************************************************.....................((...(((((((((.......((((.((((((((.....((((((.((..((((........)))).))))))))......))))....)))).........))))......)))))))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
......CGGACTACTAGGGTGCTTACT............................................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0
......CGGAATACCACGGTTCT................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................ATCAGCCCCTGATGTCAGGC............................................................................................................. 20 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................................AGATTGAAGTTGAAC......................................................................................... 15 0 3 0.33 1 0 0 1 0 0 0
............ACCACGGTCCTTGCTCTGAA.......................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
............ACCACGGGGCTCACTCCGA........................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 1 0 0 0
.........................................................................................................................................AGGATGGAGTGATTGATG............................................................................................... 18 3 20 0.15 3 1 0 0 1 0 1
.........................................................................................................................ATCAGCCCCTGATGTCAGGG............................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0
.....................................................................................................................................TGTCAGGTGCGAGAGGTTGA................................................................................................. 20 3 9 0.11 1 0 0 0 0 1 0
..................................................................................................................................................AGATTGATCTTGAACGA....................................................................................... 17 2 14 0.07 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................GTTACTGAGGTTGCT.................. 15 1 15 0.07 1 0 0 0 1 0 0
...............................................................................................AAGCCGACTTGTTTA............................................................................................................................................ 15 1 17 0.06 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:35 AM