ID:

dsi_21618

 Coordinate:

2r:5603029-5603207 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.1 -5.9 -5.9

Flybase annnotation

exon [2r_5601998_5603028_-]; CDS [2r_5601998_5603028_-]; CDS [2r_5603208_5603267_-]; exon [2r_5603208_5603356_-]; intron [2r_5603029_5603207_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGTTCCCAAGGCTCCCGGTGTGTCGCAGATGCTGAAGGATGGCGCCCGGGTGAGTGCAACAAGGAGGAATAACTCTGCGAGGAGTCCGCCGGGCATCGGTTTCATTAAGATTCGGCTAAAAAGAAAACATGCCGTCTCGGGGAGGCGCGTGATTAGTCATCCTCATGGAACTAAGCTCCACATATGAGAGAAAAATGACTAATTTAATGGTTTTACGTTTGTCCTTAGATGTACAGTGGGCTGGAGGAGGCGGTGTTCCGCAACATCAGCGCCTGCAA
********************************************************************************........(((((..(((...........))))))))..........******************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR902009
testis
 M025
embryo
 GSM343915
embryo
 O002
Head
 O001
Testis
 M053
female body
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCAACA............. 29 0 1 5.00 5 1 1 0 3 0 0 0 0 0 0 0 0 0 0
...................TGTGTCTCAGATGCTGAAGGATGGCGC......................................................................................................................................................................................................................................... 27 1 1 3.00 3 0 1 0 0 0 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCAAA.............. 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCTCAGATGCTGAAGGATGGCGC......................................................................................................................................................................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............TCCCGGTGTGTCTCAGATGCTGAA.................................................................................................................................................................................................................................................. 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCAAC.............. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCTCAGATGCTGAAGGATGGCGCAA....................................................................................................................................................................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCTCAGATGCTGAAGGATGGCGCC........................................................................................................................................................................................................................................ 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCCCGGTGTGTCGCAGATGCTGAA.................................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTTAGATGTACAACGGG...................................... 17 2 7 1.57 11 0 1 0 2 8 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTTAGATGTACAACGGGGT.................................... 19 3 9 1.44 13 0 0 0 0 5 1 3 0 0 0 1 2 1 0
.............TCCCGGTGTGTCTCAGATGCTGAAGGA............................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............CCCGGTGTGTCGCAGATG....................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................TGTGTCGCAGATGCTGAAGGATGGCGC......................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....TCCCAAGGCTCCCGGTGTGTCGCAGA......................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....TCCCAAGGCTCCCGGTGTGTCTCAGA......................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................TGTGTCTCAGATGCTGAAGGATGGCGCC........................................................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGATTCGGCTAAAAAGAAA........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGGATGTACAGTGGGCTGGAGAAGGC........................... 26 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................AGGAGTCCGCCGGGCATCGGT.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.CGTTCCCAAGGCTCCCGGTGT................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................TGTGTCGCAGATGCTGAAGGATGGCGCC........................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................GTTCCGCAACATCAGCGCCTG... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTACAGTGGGCTGGAGGAGGC........................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCA................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTACAGTGGGCTGGAGG............................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............CCCGGTGTGTCGCAGATGCTGAAG................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGATGTACAGTGGGCTGGAGGAGGC........................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TACGTTTGTCCTTAG.................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TCCCGGTGTGTCGCAGATGCTGAAGGA............................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGCTGAAGGATGGCGCCCGGA.................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTACAGTGGGCTGGAGGAGGCGGTG....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCGCAGATGCTGAAGGATGGCGCC........................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................GTCGCAGATGCTGAAGGAT.............................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................GCAGATGCTGAATAATGGTGCC........................................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTG....................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................GCAGATGCTGAAGGATGGCG.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................TCAGATGCTGAAGGATGGCGCCCGGA.................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGTCTCAGATGCTGAAGGATGGCGCCC....................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTGTCTCAGATGCTGAAGGATGGCG.......................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGCTGAAGGATGGCGCC........................................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................GTGTGTCGCAGATGCTGAA.................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATGCGCGTGTTTAGTCATTCTC.................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCAA............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCC................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTACAGTGGGCTGGAGGAGGCGGT........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTGTCGCAGATGCTGAAGGATGG............................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................GTCGCAGATGCTGAAGGA............................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGGCTGGAGGAGGCGGTGTTCCGCAGA.............. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTTTTACGTTTGTCCTTAG.................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ACAGTGGGCTGGAGGAGGCGGTGTTCCGC................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................TGGAGGAGGCGGTGTTCCGCAACATC........... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGTACAGTGGGCTGGAGGAGGCG.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AGGAATAACTCTGCGAGGAGT................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTAGATGTACAACGGGGT.................................... 18 3 20 0.60 12 0 0 0 0 3 0 0 6 0 0 0 0 2 1
..........................CAGATGCTGAATAATGGTGCC........................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........AAGGCTCCCGGTGTG................................................................................................................................................................................................................................................................ 15 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................GACGGATGGCGCTGGGGTGAG................................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................GAGAGAAGAATGACT.............................................................................. 15 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GAAGGATGGCGTTCAGGTG.................................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.....................................................AGTTCAACAAGGAGGA.................................................................................................................................................................................................................. 16 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AAGACATGCCGTCACGGT......................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGCAAGGGTTCCGAGGGCCACACAGCGTCTACGACTTCCTACCGCGGGCCCACTCACGTTGTTCCTCCTTATTGAGACGCTCCTCAGGCGGCCCGTAGCCAAAGTAATTCTAAGCCGATTTTTCTTTTGTACGGCAGAGCCCCTCCGCGCACTAATCAGTAGGAGTACCTTGATTCGAGGTGTATACTCTCTTTTTACTGATTAAATTACCAAAATGCAAACAGGAATCTACATGTCACCCGACCTCCTCCGCCACAAGGCGTTGTAGTCGCGGACGTT
********************************************************************************************************************************************************........(((((..(((...........))))))))..........******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 O001
Testis
..........................GTCTAAGACTTCCTAACGC.......................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................CTCAGGCGGCCCGTAGCCAAA................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......GGTTCCGAGGGCCACACAGAGT........................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATAATATCTTTTTGCTGATTAAAT........................................................................ 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0
.........................................................................................GGCCCGTAGCCAGAGTA............................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CCAAGATGCAAACAAGAA.................................................... 18 2 5 0.40 2 0 0 0 2 0 0 0 0 0
..........................................................................................GCCCGTAGCCAGAGTA............................................................................................................................................................................. 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GTTCTCCGCCACAAGGCTTTG.............. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................CAAGTGCAAACAGGAATC.................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................TATCCTCTCTCTTTACTGACT............................................................................ 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................TATCCTCTCTCTTTTCTGATT............................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................GGCATTGCAGTCGCTGACGT. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TACTCTCTTTTTATAGAT............................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 06:26 PM