ID:

dsi_21616

Coordinate:

3l:11408582-11408731 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_11408417_11408581_-]; exon [3l_11408310_11408581_-]; intron [3l_11408582_11409285_-]

Repeatable elements

Name	Class	Family	Strand
(TAA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTTTCCTACTGAAAAGGAGGCTTTCATTTATTTGTCATTGAACACTGCAAAGTGTATTAATCTCAATTTGCTTAATTACGGTTTTTTGAAAGTGTGTTAAAATGAAATACTAAAAAAAAGTAATTATTATTATTATTATTATTCCTTTACAGCTTAGGTAGCTGAAAATTGCAATTAATTATAAAATTCCCTCTTGCAGCTAAATCAAACGCGTTTCGTCAACCGCCGTCCGCTTAGGCAGTAAAAAGT ************************************************...(((((((((..((((((...(((((((..((((((...(((((...........)))))))))))..))))))).......................(((((.....))))).))))))..))))).))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	O001 Testis	M024 male body
................................................................................................................................................................................................TGTTTCAGCTAAATCAAACGAGT...................................	23	3	1	2.00	2	2	0	0
...........................TTTATTTGTCATTGAACAC............................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0
.TGTTTTTACTGAAAAGGAGGCT...................................................................................................................................................................................................................................	22	3	1	1.00	1	1	0	0
..........................................................................................................................................................................................................ATATCAAACGCGTTTAGT..............................	18	2	7	0.14	1	0	0	1

Anti-sense strand reads

AAAAAGGATGACTTTTCCTCCGAAAGTAAATAAACAGTAACTTGTGACGTTTCACATAATTAGAGTTAAACGAATTAATGCCAAAAAACTTTCACACAATTTTACTTTATGATTTTTTTTCATTAATAATAATAATAATAATAAGGAAATGTCGAATCCATCGACTTTTAACGTTAATTAATATTTTAAGGGAGAACGTCGATTTAGTTTGCGCAAAGCAGTTGGCGGCAGGCGAATCCGTCATTTTTCA ************************************************...(((((((((..((((((...(((((((..((((((...(((((...........)))))))))))..))))))).......................(((((.....))))).))))))..))))).))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M024 male body	M025 embryo	SRR553487 NRT_0-2 hours eggs
.......................................................................................................................................................................................CTTTAAGGGAGAACGTCGATT..............................................	21	1	1	1.00	1	1	0	0	0
.............................................................................................................................................................CCACCGAGTTTTAACGTCAA.........................................................................	20	3	13	0.15	2	0	0	2	0
....................................................................................................................................................................................................CGTCGATTTAGTTTGTACAG..................................	20	3	14	0.14	2	0	2	0	0
.....................................................................................................................................................................................................GTCGATTTAGTTTGTACAG..................................	19	3	20	0.05	1	0	1	0	0
..........................................................................................................................TTAATAATAATAATAATAAT............................................................................................................	20	0	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 05:42 AM