ID:

dsi_21607

 Coordinate:

2r:10381880-10382029 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.5 -4.0 -3.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BATUMI_I-intLTRPao+

Sense Strand Reads

TTCAGCAAACTAGGAATTTTCCAGGACCAGCAACCCCCATCATCCCAACAGTATGTATAAGGCTTATCTAGCAGCCAGAAAATTGGAATCATTTAAATTGTTAGTGAGAATTGAGTATGATAAGAAGAATTTATCGATAATTAGTCAAAAATTGTGAGCTACGACCATTCTAGGAATACAAAAAGCACGTTCTTCTAGAACCACGGCAAAGTGTATATTAGAGTTCAACAAAATCACGAACGGGAATTGT
********************************************************************************************..................((((.(((((((((.....))))))).....)).))))...........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 GSM343915
embryo
 M025
embryo
 M024
male body		 SRR902009
testis
 M023
head
...................................................................................................GATTGTCAGAATTGAGTAT.................................................................................................................................... 19 3 20 292.00 5840 4305 1271 23 9 3 1 23 0 60 82 24 28 2 9
TTCAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 1 17 32.82 558 0 0 421 1 132 4 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 24 0 16 17.38 278 0 0 35 122 16 62 34 4 5 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 23 1 17 13.88 236 0 0 109 77 32 17 0 1 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 26 0 16 13.56 217 81 0 20 71 6 12 15 2 8 0 2 0 0 0
..CAGCAAACTAGGAATTTTCCAGGAC............................................................................................................................................................................................................................... 25 0 16 8.19 131 27 27 12 22 2 22 12 0 3 0 2 0 2 0
..CAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 23 0 16 6.69 107 0 0 19 52 9 13 11 0 1 2 0 0 0 0
.....CAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................. 19 0 17 6.35 108 0 108 0 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAG.................................................................................................................................................................................................................................. 24 1 17 5.76 98 0 0 54 0 43 1 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 28 1 17 5.24 89 0 0 54 0 30 5 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 26 1 17 5.18 88 0 0 33 39 6 6 0 4 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 28 0 16 4.88 78 0 0 43 7 22 4 0 1 1 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGA................................................................................................................................................................................................................................ 24 1 17 4.53 77 0 0 15 20 19 18 0 3 0 0 0 0 2 0
.......................................................................................................GTCAGAATTGAGTAT.................................................................................................................................... 15 1 5 4.40 22 0 0 5 3 1 0 13 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 25 0 16 4.25 68 0 0 46 0 17 5 0 0 0 0 0 0 0 0
.....CAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................. 24 0 17 3.18 54 27 27 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGAGAATTGGGTAT.................................................................................................................................... 16 1 3 3.00 9 0 0 0 0 5 2 2 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGA................................................................................................................................................................................................................................ 26 1 17 2.94 50 0 0 39 0 11 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................. 22 0 16 2.75 44 27 0 0 1 1 3 6 6 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGAC............................................................................................................................................................................................................................... 25 1 17 2.71 46 0 0 12 14 5 8 0 6 0 0 0 0 1 0
.................TTTCCAGGACCAGCAACCCCCATCATC.............................................................................................................................................................................................................. 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTAGTCAAAAATTGTGAGC........................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.TCAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 24 1 17 1.82 31 0 0 28 1 2 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTT...................................................................................................................................................................................................................................... 18 0 20 1.80 36 33 0 0 2 0 0 1 0 0 0 0 0 0 0
.....CAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 23 0 17 1.65 28 27 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 26 0 16 1.56 25 0 0 15 3 5 2 0 0 0 0 0 0 0 0
.....CAAACTAGGAATTTTCCA................................................................................................................................................................................................................................... 18 0 20 1.55 31 0 31 0 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGAC............................................................................................................................................................................................................................... 27 0 16 1.31 21 0 0 9 0 10 2 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGA................................................................................................................................................................................................................................ 24 1 16 1.31 21 0 0 1 9 3 3 0 3 0 0 0 0 2 0
..CAGCAAACTATGAATTTTCCAGG................................................................................................................................................................................................................................. 23 1 16 1.25 20 0 0 3 10 1 4 0 1 0 0 0 0 1 0
..CAGCAAACTAGGAATTGTCCAG.................................................................................................................................................................................................................................. 22 1 17 1.06 18 0 0 6 4 1 6 0 1 0 0 0 0 0 0
............................................................................................TTAAATTGTTAGTGAGAATTGAGTA..................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................GAAAATTGGAATCATT............................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................TTAGTCAGAATTGAGTATA................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TTCTAGAACCACGGCAAAGTGTATATT............................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGAGAATTGTGTATGA.................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TACAAAAAGCACGTTCTTCTAGAACCACGGC........................................... 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGAC............................................................................................................................................................................................................................... 27 1 17 1.00 17 0 0 10 0 7 0 0 0 0 0 0 0 0 0
...................TCCAGGACCAGCAACCCCCATCATCCC............................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTAGAACCACGGCAAAGTGTATATT............................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................TTTTCCAGGACCAGCAACCCCCATC................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................CAGGACCAGTAACCCCCATCATCCCAAC......................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TATTAGAGTTCAACAAAATCACGAA.......... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................TCCAGGACCAGTAACCCCCATCATCC............................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................CAGGACCAGCAACCCCCATCATCCCAAC......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGTGAGCTACGACCATTCTAGGAA.......................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................TCCAGGACCAGCAACCCCCATCATC.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACGGCAAAGTGTATATTAG............................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TTGTCAGAATTGAGTAT.................................................................................................................................... 17 2 20 0.75 15 0 0 4 2 6 3 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 27 0 16 0.75 12 0 0 1 6 2 1 0 0 2 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 26 1 16 0.69 11 3 0 0 7 1 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGAC............................................................................................................................................................................................................................... 25 1 16 0.63 10 0 0 0 2 4 1 0 2 0 0 0 0 1 0
..........TAGGAATTTTCCAGGACCAGCAACCCCC.................................................................................................................................................................................................................... 28 0 5 0.60 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCAGC........................................................................................................................................................................................................................... 29 0 16 0.56 9 0 0 3 6 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATGTTAGAGTTCGACAAAA................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCA................................................................................................................................................................................................................................... 21 1 19 0.47 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCAGGA................................................................................................................................................................................................................................ 25 1 17 0.47 8 0 0 4 1 3 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACCAG............................................................................................................................................................................................................................ 28 1 17 0.41 7 0 0 4 0 1 1 0 1 0 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGCAACC....................................................................................................................................................................................................................... 25 0 5 0.40 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGGAACCCCC.................................................................................................................................................................................................................... 28 1 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................TTCCAGGACCAGCAACCCCCAACATC.............................................................................................................................................................................................................. 26 1 8 0.38 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCAGGAC............................................................................................................................................................................................................................... 26 1 17 0.35 6 0 0 5 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GTCAGAATTGAGTATG................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................GATTGTCAGAATTGAGTATG................................................................................................................................... 20 3 10 0.30 3 0 0 0 0 0 0 0 0 2 0 0 1 0 0
..CAGCAAACTAGGAATT........................................................................................................................................................................................................................................ 16 0 20 0.30 6 0 0 0 2 0 0 4 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCAG.................................................................................................................................................................................................................................. 23 1 17 0.29 5 0 0 2 0 3 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGAGAATTGGGTA..................................................................................................................................... 15 1 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................TAGTGAGAATTGGGTATT................................................................................................................................... 18 2 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................ATCGTTTGTCAGAATTGAGT...................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................AGTGAGAATTGGGTATAGTA................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACT.............................................................................................................................................................................................................................. 26 1 16 0.25 4 0 0 0 2 0 2 0 0 0 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGCAACCC...................................................................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......AAACTAGGAATTTTCCAGGACCAGCAACC....................................................................................................................................................................................................................... 29 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGT................................................................................................................................................................................................................................ 24 1 16 0.19 3 0 0 0 1 0 1 1 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 25 0 16 0.19 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCAG............................................................................................................................................................................................................................ 28 0 16 0.19 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................. 24 0 16 0.19 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTTTCCAGGAC............................................................................................................................................................................................................................... 26 0 16 0.19 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGAT............................................................................................................................................................................................................................... 25 1 17 0.18 3 0 0 0 0 0 1 1 0 0 0 0 0 1 0
..CAGCAAACTAGGAATTGTCCAGGACCAGC........................................................................................................................................................................................................................... 29 1 17 0.18 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGT................................................................................................................................................................................................................................ 24 2 17 0.18 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGAT............................................................................................................................................................................................................................... 25 2 18 0.17 3 0 0 0 1 0 1 0 1 0 0 0 0 0 0
...............AGTTTCCAGGACCAGCAACCC...................................................................................................................................................................................................................... 21 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCAGA........................................................................................................................................................................................................................... 29 1 16 0.13 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...AGCAAACTAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 23 0 16 0.13 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0
.TCAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 24 0 16 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................. 27 0 16 0.13 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGAA............................................................................................................................................................................................................................... 25 1 16 0.13 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
....................................................................................................TTTGTCAGAATTGAGTAT.................................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTATGAATTTTCCAGG................................................................................................................................................................................................................................. 25 1 16 0.13 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGA................................................................................................................................................................................................................................. 23 1 16 0.13 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..CAGCAAACTAAGAATTGTCCAGG................................................................................................................................................................................................................................. 23 2 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCAGGACCAG............................................................................................................................................................................................................................ 29 1 17 0.12 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
TGCAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.12 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACA.............................................................................................................................................................................................................................. 26 2 17 0.12 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGT................................................................................................................................................................................................................................. 25 2 17 0.12 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGAG............................................................................................................................................................................................................................... 25 2 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 27 1 17 0.12 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGACCAG............................................................................................................................................................................................................................ 30 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...AGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 25 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGATA.............................................................................................................................................................................................................................. 26 3 18 0.11 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGCAATCCCC.................................................................................................................................................................................................................... 28 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGTGAGAATTGGGTATAGT................................................................................................................................. 19 3 18 0.11 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCC.................................................................................................................................................................................................................................... 20 0 19 0.11 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTC..................................................................................................................................................................................................................................... 19 0 19 0.11 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCA................................................................................................................................................................................................................................... 21 0 19 0.11 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................TTTGTCAGAATTGAGTA..................................................................................................................................... 17 2 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAA.................................................................................................................................................................................................................................. 22 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..............AAGTTTCCAGGACCAGCAACC....................................................................................................................................................................................................................... 21 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................TTTCCAGGACCAGCAACC....................................................................................................................................................................................................................... 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..........TAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 16 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................TTCCAGGACCAGCAACCCCC.................................................................................................................................................................................................................... 20 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCA................................................................................................................................................................................................................................... 23 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCC.................................................................................................................................................................................................................................... 22 1 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAAT......................................................................................................................................................................................................................................... 15 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACAAAATCACCAACGTGACT... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................ATGATAGGAAGAATT....................................................................................................................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGGATTTTCCAGGA................................................................................................................................................................................................................................ 24 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCATACTAGGAATTTTCCAGAA................................................................................................................................................................................................................................ 24 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...AGCAAACTAGGAATTTTCCAGGACCAG............................................................................................................................................................................................................................ 27 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCG............................................................................................................................................................................................................................. 27 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
TTCAGCAAACTATGAATTTTCCAGGAC............................................................................................................................................................................................................................... 27 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGAA............................................................................................................................................................................................................................... 27 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGCAATTTTCCAGGAC............................................................................................................................................................................................................................... 25 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGC................................................................................................................................................................................................................................. 23 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....GCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 21 0 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACTC............................................................................................................................................................................................................................. 27 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..GAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 26 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGACCAGC........................................................................................................................................................................................................................... 31 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGTAATTTTCCAGG................................................................................................................................................................................................................................. 25 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................. 29 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGG................................................................................................................................................................................................................................ 24 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGAGCT............................................................................................................................................................................................................................. 27 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..AAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 26 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACA.............................................................................................................................................................................................................................. 26 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGACCAGC........................................................................................................................................................................................................................... 29 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTACGAATTTTCCAGGAC............................................................................................................................................................................................................................... 25 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................ATTGATTGTCAGAATTGAGT...................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.TCAGCAAACTATGAATTTTCCAGGA................................................................................................................................................................................................................................ 25 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..GAGCAAACTAGGAATTTTCCAGGA................................................................................................................................................................................................................................ 24 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.TCAGCAAACTATGAATTTTCCAGG................................................................................................................................................................................................................................. 24 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGACCAG............................................................................................................................................................................................................................ 28 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TGCAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 25 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTATGAATTTTCCAGGA................................................................................................................................................................................................................................ 26 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGACCAGCA.......................................................................................................................................................................................................................... 30 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..CAGCAAACTAGTAATTTTCCAGGAC............................................................................................................................................................................................................................... 25 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTTCCCAGGATC.............................................................................................................................................................................................................................. 27 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTCCAGGT................................................................................................................................................................................................................................ 26 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGAA............................................................................................................................................................................................................................... 25 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAGGAAA.............................................................................................................................................................................................................................. 26 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.TCAGCAAACTATGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 27 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
CTCAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCGGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTGGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTATGAATTTTCCAGGAT............................................................................................................................................................................................................................... 25 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACGAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 28 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGAAAA............................................................................................................................................................................................................................. 27 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ATCAGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 28 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACCA............................................................................................................................................................................................................................. 27 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....GCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 21 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTCAGGAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACCAA............................................................................................................................................................................................................................ 28 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
TTCAGCAAAGTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACAA............................................................................................................................................................................................................................. 27 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGACCAGC........................................................................................................................................................................................................................... 31 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGG................................................................................................................................................................................................................................ 24 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCCAGGACT.............................................................................................................................................................................................................................. 28 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGT................................................................................................................................................................................................................................. 23 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
GTCAGCAAACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 28 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CGGCAAACTAGGAATTGTCCAGGA................................................................................................................................................................................................................................ 24 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGA................................................................................................................................................................................................................................. 23 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTTAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGAAATTGTCCAGG................................................................................................................................................................................................................................. 23 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTGAGCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
TTCAGTAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 28 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....GCAAACTAGGAATTGTCCAG.................................................................................................................................................................................................................................. 20 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGACT.............................................................................................................................................................................................................................. 26 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..CAGCACACTAGGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 26 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTACGAATTGTCCAGGACC.............................................................................................................................................................................................................................. 26 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGCCCAGG................................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CAGTAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................. 26 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGGT............................................................................................................................................................................................................................... 25 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......AACTAGGAATTTTCCAGT................................................................................................................................................................................................................................. 18 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......AAACTAGGAATTTTCCAGGACCAGCA.......................................................................................................................................................................................................................... 26 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTCAGG.................................................................................................................................................................................................................................. 24 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....CAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 20 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCAAGC................................................................................................................................................................................................................................. 23 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCAGGATAA............................................................................................................................................................................................................................. 27 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..CACCAAACTAGGAATTGTCCAGG................................................................................................................................................................................................................................. 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTGCAG.................................................................................................................................................................................................................................. 22 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....CAAACTAGGAATTGTCCAGGACCAGC........................................................................................................................................................................................................................... 26 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTTTC..................................................................................................................................................................................................................................... 21 0 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTTTCCAAAT................................................................................................................................................................................................................................ 24 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..CATCAACCTAGGAATTTTCCAGG................................................................................................................................................................................................................................. 23 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGGA.......................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........CTAGGAATTTTCCAG.................................................................................................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCCA................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............AGTTTCCAGGACCAGCAACC....................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................TTTCCAGGACCAGCA.......................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TAGGAATTTTCCAGGAC............................................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTCC.................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................TCCAGGACCAGCAACC....................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................GTTTCCAGGACCGGCAACCC...................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAATTGTC..................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................TTCCAGGACCAGCAAC........................................................................................................................................................................................................................ 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGAAGAATTTTTCGA................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
TTCAGCAAACTAGGAATTGTC..................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAGCAAACTAGGAAG......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........TAGGAATTTTCCAGGACCAGC........................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................TTTCCAGGACCAGCAACCC...................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.TCAGCAAACTAGGAATTGTCCA................................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGTCGTTTGATCCTTAAAAGGTCCTGGTCGTTGGGGGTAGTAGGGTTGTCATACATATTCCGAATAGATCGTCGGTCTTTTAACCTTAGTAAATTTAACAATCACTCTTAACTCATACTATTCTTCTTAAATAGCTATTAATCAGTTTTTAACACTCGATGCTGGTAAGATCCTTATGTTTTTCGTGCAAGAAGATCTTGGTGCCGTTTCACATATAATCTCAAGTTGTTTTAGTGCTTGCCCTTAACA
*******************************************************************************************..................((((.(((((((((.....))))))).....)).))))...........******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR902008
ovaries
 M024
male body		 M023
head
 M053
female body
 GSM343915
embryo
.......TTGATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 25 0 18 4.50 81 20 14 3 28 6 4 0 0 1 0 0 2 3
.............CTTAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 26 0 5 3.80 19 11 3 3 0 0 1 0 0 1 0 0 0 0
............CCTTAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 27 0 5 3.00 15 3 6 0 6 0 0 0 0 0 0 0 0 0
......TTTGATCCTTAAAAGGTCCT................................................................................................................................................................................................................................ 20 0 18 1.61 29 0 0 0 0 1 0 0 28 0 0 0 0 0
..............TTAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 25 0 5 1.60 8 3 4 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCTCAAGTTGTTATATTGC............ 19 2 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...............TAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 24 0 5 1.40 7 1 5 1 0 0 0 0 0 0 0 0 0 0
................AAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 23 0 5 1.00 5 4 0 0 0 1 0 0 0 0 0 0 0 0
..................................GGGGTAGTAGGGTTGTCATACATATTC............................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTGGTAAGATGCTTATGTTTTTCGT............................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGTGCATGCCCTGAA.. 15 2 20 0.65 13 0 0 0 0 0 13 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 24 0 18 0.61 11 9 1 1 0 0 0 0 0 0 0 0 0 0
....CGTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 25 0 16 0.50 8 1 1 2 0 1 2 0 0 0 0 0 1 0
AAGTCGTTTGATCCTTAAAAGGTCCT................................................................................................................................................................................................................................ 26 0 16 0.38 6 0 1 3 0 1 1 0 0 0 0 0 0 0
........................CTGGTCGTTGGGGGT................................................................................................................................................................................................................... 15 0 11 0.36 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..............TTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 18 0 20 0.30 6 1 0 1 0 2 2 0 0 0 0 0 0 0
.......TTGATCCTTAAAAGGTCCTGGTCGTT......................................................................................................................................................................................................................... 26 0 11 0.27 3 2 0 0 0 0 1 0 0 0 0 0 0 0
.AGTCGTTTGATCCTTAAAAGGTCCT................................................................................................................................................................................................................................ 25 0 16 0.25 4 0 0 3 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTGTTTTAGTGGTTGCCCTGA... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........TGATCCTTAAAAGGTCCTGGTCGTTG........................................................................................................................................................................................................................ 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............TATTAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 27 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................GAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CTTAAAAGGTCCTGGTCCTTGGGGGT................................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............CTTAAAAGGTCCTGGCCGTTGGGGGT................................................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............AAAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 25 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............TTAAAAGGTCCTGGTCCTTGGGGGT................................................................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........TTTATAAAAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 28 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................AAAAGGTCCTGGTCCTTGGGGGT................................................................................................................................................................................................................... 23 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GATCTCAAGTTGTTATATTGC............ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............TAAAAGGTCCTGGCCGTTGGGGGT................................................................................................................................................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..GTCGTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 27 0 16 0.19 3 0 0 1 0 1 1 0 0 0 0 0 0 0
.AGTCGTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 28 0 16 0.19 3 0 0 2 0 0 1 0 0 0 0 0 0 0
.......................CCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 16 0 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCTCAAGTTGTTATATTG............. 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......TTTGATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 26 0 18 0.17 3 2 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AAAATCTAGGTGCCGTTT........................................ 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............TAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 17 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...........AACTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 21 2 20 0.15 3 0 1 0 0 0 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................ATCTCAAGTGGTTATATTGC............ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................TAATCTCAAGTTGGT................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGTTGTTTTAGTGAT........... 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.AGTCGTTTGATCCTTAAAAGGTCCTG............................................................................................................................................................................................................................... 26 0 16 0.13 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.....GTTTGATACTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 24 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......TTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 22 0 18 0.11 2 0 0 0 0 2 0 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTGGTC............................................................................................................................................................................................................................ 22 0 18 0.11 2 1 0 0 0 0 1 0 0 0 0 0 0 0
....................GGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 19 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AAGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AAGTCGTTTGATCCTTAAAA...................................................................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
............CCTTAAAAGGTCCTGG.............................................................................................................................................................................................................................. 16 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........GATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................AGGTCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TCCTGGTCGTTGGGGGT................................................................................................................................................................................................................... 17 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTGGTCGTT......................................................................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CTTAAAAGGTCCTGGTCGTT......................................................................................................................................................................................................................... 20 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............TTAAAAGGTCCTGGTCGTT......................................................................................................................................................................................................................... 19 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...TCGTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 26 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
AAGTCGTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 29 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...TCGTTTGATCCTTAAAAGGTCCTGGTCCT.......................................................................................................................................................................................................................... 29 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....CGTTTGATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 28 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...TCGTTTGATCCTTAAAAGGTCCTGT.............................................................................................................................................................................................................................. 25 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....CGTTTGATCCTTAAAAGGTCCTGGTC............................................................................................................................................................................................................................ 26 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.AGTCGTTTGATACTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 28 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...TCGTTTGATCCTTAAAAGGTCCTGGTC............................................................................................................................................................................................................................ 27 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....GTTTGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 24 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....CGTTTGATCCTTAACAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 28 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....CGTTTGATACTTAAAACGTCCTGGT............................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......CATCATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 26 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......ATGATCCTTAAAAGGTCCTG............................................................................................................................................................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TTTGTCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 25 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........TGATCCTTAAAGGGTCCTGGTCGT.......................................................................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TTGATCCTTAAAAGGTC.................................................................................................................................................................................................................................. 17 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAAGTAGGGTTGTCGTA.................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTGGTCCT.......................................................................................................................................................................................................................... 24 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......TTCAGTCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 25 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......ATGATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 25 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTG............................................................................................................................................................................................................................... 19 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TTGATCCTTAAAAGGTCC................................................................................................................................................................................................................................. 18 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCT................................................................................................................................................................................................................................ 18 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........TGATCCTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 21 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATGTTCTTCGTGCAA........................................................... 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AAGTCGTTTGATCCTTAAAAGGT................................................................................................................................................................................................................................... 23 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
AAGTCGTTTGATCCTTAAAAGCCT.................................................................................................................................................................................................................................. 24 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........TAAGTCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 24 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............CTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........TCCTTAAAAGGTCCTG............................................................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TTAAGTCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 26 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........AAAACTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 23 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......TTTGATCCTTAAAAGGT................................................................................................................................................................................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AAGTCGTTTGATCCTTAACAGGT................................................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......TTATTACTTAAAAGGTCCTGGT............................................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............CCTTAAAAGGTCCTGGTC............................................................................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATGTTTTTCGTGCTA........................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........TATCCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........ATTCTTAAAAGGTCCTGGTCGT.......................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........GATCCTTAAAAGGTCCTGG.............................................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10381830-10382079 + dsi_21607 TTCAGCAAACTAGGAATTTTCCAGGACCAGCAACC-CCCATCATCCCAACAGTATGTATAAGG--------------CTTATCTAGCAGCCAGA-AAATTGGAATCATTTAAATTGTTAGTGAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTAGTCAAAA----------------------------AT-TGTGAGCTACGACCATTCTAGGAATACAAAAAGCACGTTCTTCTAGAACCACGGCAAAGTGTATAT-TAGAGTTCAACAAAATCACGAACGGGAATTGT
droSec2 scaffold_1:7219997-7220193 + T----------------------------------------------------ATGTATACGG--------------CTTATCCAGCAGCCTGC-AAACTA-AATCGTTGCAATTCTTAGTAAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTACTCAAAA----------------------------CT-TCTGTGCTACGAC-ATTTTACGACTACAAAAAGCACGTTCTTTTAGAACTACGACAATGTGTATAT-TAAAGTTCAACAAAATCAGCAACGCGAATTGT
dm3 chr2R:9692817-9693029 + T----------------------------------------------------ATGTATAAGGCGCGTTTACACTCGCTTATCCAGCAGCCAAAAAAACTGGAATCG--GAAATTGTTTGTGAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTAGTCAAAA----------------------------CT-TGTGAACTACGACCACTCTACGAATACAGAAAGCACATTCTTCCAGAACCACGACAGCGTGTATATTTAAAGTTAAACAAAATCACCAACGCGAATTGC
droYak3 v2_chrUn_823:3363-3523 + TTCAGCATATTTGGAAAATTCCAGGAC-AGCAGCCCCCCTACAACCCATCAACATGGTT--------------------AAATCAGTAAA-------------------------------GATAATAAATAATATTAAATAAATATTTATTTATACTTTGTCAATAAGAAAACTATTTTAACAATTATTGACAAATGTTTAAGATATGCCCA------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCAGCAAACTAGGAATTTTCCAGGACCAGCAACC-CCCATCATCCCAACAGTATGTATAAGG--------------CTTATCTAGCAGCCAGA-AAATTGGAATCATTTAAATTGTTAGTGAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTAGTCAAAA----------------------------AT-TGTGAGCTACGACCATTCTAGGAATACAAAAAGCACGTTCTTCTAGAACCACGGCAAAGTGTATAT-TAGAGTTCAACAAAATCACGAACGGGAATTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..CAGCAAACTAGGAATTTTCCAGGA...............................................................................................................................................................................................................................................................................241617.3827800050035122166234040000
..CAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................................................................261613.562170028810207161215020000
..CAGCAAACTAGGAATTTTCCAGGAC..............................................................................................................................................................................................................................................................................25168.1913100232727122222212002000
..CAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................................................................23166.69107000100195291311200000
.....CAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................................................................19176.351080000010800000000000
TTCAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................................................................28164.88780001004372240010000
TTCAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................................................................25164.25680000004601750000000
.....CAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................................................................24173.18540000272700000000000
..CAGCAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................................................................22162.7544000027001136060000
.................TTTCCAGGACCAGCAACC-CCCATCATC............................................................................................................................................................................................................................................................2712.00200000000200000000
.............................................................................................................................................................TTAGTCAAAA----------------------------AT-TGTGAGC............................................................................................1912.00200200000000000000
..CAGCAAACTAGGAATTTT.....................................................................................................................................................................................................................................................................................18201.8036000033002001000000
.....CAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................................................................23171.6528000027001000000000
TTCAGCAAACTAGGAATTTTCCAGGA...............................................................................................................................................................................................................................................................................26161.5625000000153520000000
.....CAAACTAGGAATTTTCCA..................................................................................................................................................................................................................................................................................18201.5531000003100000000000
TTCAGCAAACTAGGAATTTTCCAGGAC..............................................................................................................................................................................................................................................................................27161.3121000000901020000000
............................................................................................................TTAAATTGTTAGTGAGAATTGAGTA....................................................................................................................................................................2511.00100000000010000000
............................................................................................GA-AAATTGGAATCATT............................................................................................................................................................................................1611.00100000000001000000
..............................................................................................................................................................................................................................................TTCTAGAACCACGGCAAAGTGTATAT-T...............................2711.00100000001000000000
..............................................................................................................................................................................................................................TACAAAAAGCACGTTCTTCTAGAACCACGGC............................................3111.00100000001000000000
...................TCCAGGACCAGCAACC-CCCATCATCCC..........................................................................................................................................................................................................................................................2711.00100000000100000000
...............................................................................................................................................................................................................................................TCTAGAACCACGGCAAAGTGTATAT-T...............................2611.00100000000010000000
................TTTTCCAGGACCAGCAACC-CCCATC...............................................................................................................................................................................................................................................................2511.00100000000100000000
.....................................................................................................................................................................................................................................................................TAT-TAGAGTTCAACAAAATCACGAA..........2511.00100000010000000000
.....................CAGGACCAGCAACC-CCCATCATCCCAAC.......................................................................................................................................................................................................................................................2811.00100000010000000000
....................................................................................................................................................................................................T-TGTGAGCTACGACCATTCTAGGAA...........................................................................2511.00100000000001000000
...................TCCAGGACCAGCAACC-CCCATCATC............................................................................................................................................................................................................................................................2511.00100000000100000000
........................................................................................................................................................................................................................................................ACGGCAAAGTGTATAT-TAG.............................1911.00100000000001000000
.TCAGCAAACTAGGAATTTTCCAGGACC.............................................................................................................................................................................................................................................................................27160.751200020016210000000
..........TAGGAATTTTCCAGGACCAGCAACC-CCC..................................................................................................................................................................................................................................................................2850.60300000021000000000
..CAGCAAACTAGGAATTTTCCAGGACCAGC..........................................................................................................................................................................................................................................................................29160.56900000036000000000
..........TAGGAATTTTCCAGGACCAGCAACC-.....................................................................................................................................................................................................................................................................2550.40200000010000010000
..CAGCAAACTAGGAATT.......................................................................................................................................................................................................................................................................................16200.30600000002004000000
..CAGCAAACTAGGAATTTTCCAGGACT.............................................................................................................................................................................................................................................................................26160.25400000002020000000
..........TAGGAATTTTCCAGGACCAGCAACC-C....................................................................................................................................................................................................................................................................2650.20100000000000010000
......AAACTAGGAATTTTCCAGGACCAGCAACC-.....................................................................................................................................................................................................................................................................2950.20100000000100000000
..CAGCAAACTAGGAATTTTCCAGGT...............................................................................................................................................................................................................................................................................24160.19300000001011000000
.TCAGCAAACTAGGAATTTTCCAGGA...............................................................................................................................................................................................................................................................................25160.19300000020010000000
..CAGCAAACTAGGAATTTTCCAGGACCAG...........................................................................................................................................................................................................................................................................28160.19300000003000000000
TTCAGCAAACTAGGAATTTTCCAG.................................................................................................................................................................................................................................................................................24160.19300000020100000000
.TCAGCAAACTAGGAATTTTCCAGGAC..............................................................................................................................................................................................................................................................................26160.19300000020010000000
..CAGCAAACTAGGAATTTTCCAGGAT..............................................................................................................................................................................................................................................................................25170.18300000000011001000
..CAGCAAACTAGGAATTTTCCAGGACCAGA..........................................................................................................................................................................................................................................................................29160.13200000011000000000
...AGCAAACTAGGAATTTTCCAGGA...............................................................................................................................................................................................................................................................................23160.13200010000010000000
.TCAGCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................................................................24160.13200000020000000000
..CAGCAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................................................................27160.13200010000000010000
..CAGCAAACTAGGAATTTTCCAGGAA..............................................................................................................................................................................................................................................................................25160.13200000000001010000
..CAGCAAACTAGGAATTTTCCAGA................................................................................................................................................................................................................................................................................23160.13200000000020000000
..CAGCAAACTAGGAATTTTCC...................................................................................................................................................................................................................................................................................20190.11200000000002000000
..CAGCAAACTAGGAATTTTC....................................................................................................................................................................................................................................................................................19190.11200000000002000000
..CAGCAAACTAGGAATTTTCCA..................................................................................................................................................................................................................................................................................21190.11200000010001000000
.................TTTCCAGGACCAGCAACC-.....................................................................................................................................................................................................................................................................18200.10200000020000000000
..........TAGGAATTTTCCAGGA...............................................................................................................................................................................................................................................................................16200.10200000000002000000
..................TTCCAGGACCAGCAACC-CCC..................................................................................................................................................................................................................................................................20100.10100000000100000000
..CAGCAAACTAGGAAT........................................................................................................................................................................................................................................................................................15200.10200000000002000000
...AGCAAACTAGGAATTTTCCAGGACCAG...........................................................................................................................................................................................................................................................................27160.06100000000010000000
..CAGCAAACTAGGAATTTTCCAGGACCG............................................................................................................................................................................................................................................................................27160.06100000000001000000
TTCAGCAAACTAGGAATTTTCCAGGAA..............................................................................................................................................................................................................................................................................27160.06100000010000000000
....GCAAACTAGGAATTTTCCAGG................................................................................................................................................................................................................................................................................21160.06100000000001000000
..CAGCAAACTAGGAATTTTCCAGGACTC............................................................................................................................................................................................................................................................................27160.06100000000001000000
TTCAGCAAACTAGGAATTTTCCAGGACCAGC..........................................................................................................................................................................................................................................................................31160.06100000010000000000
TTCAGCAAACTAGGAATTTTCCAGGACCA............................................................................................................................................................................................................................................................................29160.06100000001000000000
..CAGCAAACTAGGAATTTTCCAGGG...............................................................................................................................................................................................................................................................................24160.06100000000010000000
..CAGCAAACTAGGAATTTTCCAGGACA.............................................................................................................................................................................................................................................................................26160.06100000001000000000
..CAGCAAACTAGGAATTTTCCAGGACCAGCA.........................................................................................................................................................................................................................................................................30160.06100000000000001000
TTCAGCAAACTAGGAATTTTCCAGGT...............................................................................................................................................................................................................................................................................26160.06100000010000000000
..CAGCAAACTAGGAATTTTCCAGGAAA.............................................................................................................................................................................................................................................................................26160.06100000000001000000
.......AACTAGGAATTTTCCAGT................................................................................................................................................................................................................................................................................18180.06100000000001000000
......AAACTAGGAATTTTCCAGGACCAGCA.........................................................................................................................................................................................................................................................................26180.06100000000010000000
TTCAGCAAACTAGGAATTTTC....................................................................................................................................................................................................................................................................................21190.05100000000001000000
..CAGCAAACTAGGAATTTTCCAAAT...............................................................................................................................................................................................................................................................................24190.05100000000000010000
.........CTAGGAATTTTCCAG.................................................................................................................................................................................................................................................................................15200.05100000000001000000
.................TTTCCAGGACCAGCA.........................................................................................................................................................................................................................................................................15200.05100000010000000000
..........TAGGAATTTTCCAGGAC..............................................................................................................................................................................................................................................................................17200.05100000000010000000
...................TCCAGGACCAGCAACC-.....................................................................................................................................................................................................................................................................16200.05100000000001000000
..................TTCCAGGACCAGCAAC.......................................................................................................................................................................................................................................................................16200.05100000001000000000
..CAGCAAACTAGGAAG........................................................................................................................................................................................................................................................................................15200.05100000000001000000
..........TAGGAATTTTCCAGGACCAGC..........................................................................................................................................................................................................................................................................21200.05100000000100000000
.................TTTCCAGGACCAGCAACC-C....................................................................................................................................................................................................................................................................19200.05100000010000000000
droSec2
T----------------------------------------------------ATGTATACGG--------------CTTATCCAGCAGCCTGC-AAACTA-AATCGTTGCAATTCTTAGTAAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTACTCAAAA----------------------------CT-TCTGTGCTACGAC-ATTTTACGACTACAAAAAGCACGTTCTTTTAGAACTACGACAATGTGTATAT-TAAAGTTCAACAAAATCAGCAACGCGAATTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
T----------------------------------------------------ATGTATAAGGCGCGTTTACACTCGCTTATCCAGCAGCCAAAAAAACTGGAATCG--GAAATTGTTTGTGAGAATTGAGTATGATAA-GAAGAATTTATCGATAATTAGTCAAAA----------------------------CT-TGTGAACTACGACCACTCTACGAATACAGAAAGCACATTCTTCCAGAACCACGACAGCGTGTATATTTAAAGTTAAACAAAATCACCAACGCGAATTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................CTTCCAGAACCACGACAGCGTG......................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACATTCTTCCAGAACCACGACAGCG........................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCCAGAACCACGACAGCG........................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CCAGAACCACGACAGCGTG......................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCACATTCTTCCAGAACCA................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................ACCACGACAGCGTGTATA..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCACATTCTTCCAGAACCACG..............................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GTTTGTGAGAATTGAGTAT...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................ACTCTACGAATACAGAAAGCACATTCT..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AACAAAATCACCAACGCG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGCACATTCTTCCAGAACCACGA.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATATTTAAAGTTAAACAAA..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACATTCTTCCAGAACCAC...............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACATTCTTCCAGAACCACGACAGCGTG......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................ACATTCTTCCAGAACCACGA.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................GACAGCGTGTATATTTAAAG...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................GTTTGTGAGAATTGAGTAC...................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAAGTTAAACAAAATCACTC...........2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAAAGTTAAACAAAATCAGA............2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGTGAGAATTGAGTATCT.................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................TGGAATCG--GAAATTGTT...................................................................................................................................................................................1790.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTGTGAGAATTGAGTATA..................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTAAAGTTAAACAAAATT...............18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droYak3
TTCAGCATATTTGGAAAATTCCAGGAC-AGCAGCCCCCCTACAACCCATCAACATGGTT--------------------AAATCAGTAAA-------------------------------GATAATAAATAATATTAAATAAATATTTATTTATACTTTGTCAATAAGAAAACTATTTTAACAATTATTGACAAATGTTTAAGATATGCCCA------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CAGCATATTTGGAAAATTCCAGGAC-.............................................................................................................................................................................................................................................................................25200.10202000000000
TTCAGCATATTTGGAAAATTCCAGG................................................................................................................................................................................................................................................................................25200.05100010000000
.......TATTTGGAAAATTCCAGGAC-AGCAGC.......................................................................................................................................................................................................................................................................26200.05101000000000
TTCAGCATATTTGGAAAATTCCAGGAC-.............................................................................................................................................................................................................................................................................27200.05101000000000
......ATATTTGGAAAATTCCAGG................................................................................................................................................................................................................................................................................19200.05101000000000
TTCAGCATATTTGGAAAATTCCAGGAC-AG...........................................................................................................................................................................................................................................................................29200.05100000000001

Generated: 05/19/2015 at 05:31 AM