ID:

dsi_21579

 Coordinate:

3r:695739-695888 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.6 -14.7 -14.7

Flybase annnotation

CDS [3r_695889_695967_+]; exon [3r_695889_696503_+]; intron [3r_695536_695888_+]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCTGGACCTGTGTCCGGCCAGATATGTACATATGTGTCTCTCCACCCTTATGAACATTAAGATATAGTACGCATATTATATGTTTGCACATGCTAGGGACGTTGATTTCTTTCATTTTAATATGTGTTCTAAAAAGTGCTCCCACTAGCTGAGCAACCCTTGGCTTACCTTTTAATAACTTTCAATTTTGTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACG
*****************************************************************************.......((((.((.((((((((.((..........(((........)))...........))))))..)))))).)))).............******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.................................................TATGAACATTAAGATATAGTACGCATA.............................................................................................................................................................................. 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TTTTGTTTTCATAGATGGCTGGAGGTA..................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACAACCCAAACCCAGGACTTCAAG.... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................ATAGATGGCTGGAGGTTTT................................... 19 2 2 1.00 2 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................................TGAGCAACCCTTGGCTTACC................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GATGGCTGGAGGTACTGC................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................TAATAACTTTCAATTTTGTTTTCATAGAT................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGGTACTGCGCAGCACAACCCA.................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................AACCCAGGACTTCAAGAAC. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................TATATGTTTGCACATGCTAGGGA...................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................TGTGTCTCTCCACCCTTATGA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................TCTGAACCTATGTGTCTCTCCACCCTT........................................................................................................................................................................................................ 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................CATAGATGGCTGGAGGTACTG.................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................TGTCTCTCCACCCTTATGAACATTAAGA........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGTTTTCATAGATGGCTGG.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GATGGCTGAAGTTACTGC................................. 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0
............................................................................................GATAGGGACGTCGATCTC............................................................................................................................................ 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................TATGAACATTTAGATAGATTA.................................................................................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................TCATTTTCATACATGGCTGG.......................................... 20 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0
............................................................................................GATAGGGACGTCGATTCC............................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGACCTGGACACAGGCCGGTCTATACATGTATACACAGAGAGGTGGGAATACTTGTAATTCTATATCATGCGTATAATATACAAACGTGTACGATCCCTGCAACTAAAGAAAGTAAAATTATACACAAGATTTTTCACGAGGGTGATCGACTCGTTGGGAACCGAATGGAAAATTATTGAAAGTTAAAACAAAAGTATCTACCGACCTCCATGACGCGTCGTGTTGGGTTTGGGTCCTGAAGTTCTTGC
********************************************************************************.......((((.((.((((((((.((..........(((........)))...........))))))..)))))).)))).............***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................ATACACAAGATTTTTCACGAGGGTGAT...................................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0
.........................................................................................................................ATACACAAGATTTTTCACGAGGGT......................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0
............................................................................................................................................................................................................................CGTGTTGGGTTTGGGTCCTGAAGTTCT... 27 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................ACTCGTTGGGAACCGAATGGAAAAT........................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................CGTGTTGGGTTTGGGTCCTGAAGTTCCAG. 29 2 1 1.00 1 1 0 0 0 0 0
...............................................................ATATCATGCGTATAATATACA...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TATACACAAGATTTTTCACGAGGGT......................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
...ACCTGGTCACAGTCCGGTCGAT................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TGGAAAATTATTGAAAGTTA............................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........AACAGGCCGGTCTATACATGTATACAC..................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................CGTGTTGGGTTTGGGTCCTGAAGTT..... 25 0 1 1.00 1 1 0 0 0 0 0
......TGGACACAGGCCGGTCTATACATGT........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TTGGGTTTGGGTCCTGAAGTT..... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................CGACTCGTTGGGAACCGAATGGAAAAT........................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TGGAAAATTATTGAAAGTTAAAACAAAA....................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.......................................AGAGGTGGGAATACTTGTAATTCTATAT....................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................AGGGTGATCGACTCGT.............................................................................................. 16 0 2 0.50 1 1 0 0 0 0 0
.....................................................................TGCGTAGAATATCCAAACG.................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 1 0
...............................................................................................................................AAAATTTTTCACGAAGGCGA....................................................................................................... 20 3 20 0.20 4 0 2 0 0 0 2
............................................................................................................................................AGGCTGATCGTCTCGTTCGG.......................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0
...................................................................................................TGCAACTACAGAAAGCAAAG................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0
..................................GACAGAGTGCTGGGAAT....................................................................................................................................................................................................... 17 3 20 0.05 1 1 0 0 0 0 0
...ACAGGGACACAGGCCGG...................................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:695689-695938 + dsi_21579 ATCTGGACCTGT--GTCCGGCCAGATATGTACATATGTGT------CTCTCC----ACCCTTATGAACATTAAGATAT------------------AGT-ACGCATATTATATGTTTGCACATGCTAGG--GAC--------------------------------GTTGATT--------------------------TCTTT-CATTTTAATATGTGTTCTAAAA-----------AGTGCTCCCACT------AGC----------------TGA----------GCAACCCTTGGC----------------TTACCTTT---------TAAT---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACG
droSec2 scaffold_6:868120-868369 + ATCTGGACCTGT--GTCCGGCCAGATATGTACATATGTTT------CTCTCC----ACCCTTATGAACAATAAGATAT------------------AGT-ACGCATATTGTATGTTTGCACATGCTAGG--GAC--------------------------------GTTGATT--------------------------CCTTT-CATTTTAATATGTGTTCTAAAA-----------AGTGTTCCCACT------AGC----------------TGA----------GCAACCCTTGGC----------------TTACCTTT---------TAAT---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACG
dm3 chr3R:770589-770746 + GTTGATTTTTT-TCATTTTA----------ATATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTAAAA-----------ATTGCTCCCACC------ACC----------------TGA----------GTAACCCTTGGC----------------TTACCTTTAAATGTATTTAAA---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACG
droEre2 scaffold_4770:1067687-1067962 + TAAGTGC---------------------------------------CTGTCC----GCCCGTATGAACGTCGAGATCTTG------------------C-ACGCATATTCTA---------------AACCTATGTTTAATTTGTT--------------------GATATTT--------------------------TTTTC-AATTTTATTATTTTTCTTGCAAATT---------TCTTTCGATGTTTTAAAACGTTTTGTGTATACTAGACGAAACTATATCGCTCGCTCTTGTT----------------TCATATTTCAATGTAAATAGAAACGCATGTAATAATAACTTCAAATTTT-------ATATTCATAGATGGCTGGAGGTACTGCGCAGCACGACCCAAACCCAGGACTTCAAGAACA
droYak3 chr2h:603843-604022 + ATCTGGCCATGTCCGTCTGT----------CCGTCCGTCTGT----------------------------CGAGATCTCAGGAACTATAAAATACTAG-AAAGTTTAGATTAAGCTTACAGACTTCAGA--GAC--------------------------------ATGTTCC-----------------------------------------AC-----------GCCCACTCTAACACCCACAAACCGCCCAAAACTGCCATGCCC--------------------------ACACT--------TTTGAAAAAT-GT-TT---------TAAT---------------ATTTTTTC------------ATTTT-------------------------------------------------------
droEug1 scf7180000409759:718950-719013 + TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CTGTTTATAGATGGCTGGAAGTACTGCGCAGTACGACTCAAACCCAGGACTTCAAGAATA
droBia1 scf7180000302411:230518-230734 - ATCTAGCCATGTCTGTCTGT----------CTGTCTG--------------------TCCGTATAAACGCTGAGATCTCGGAAACTATAAG-TACTAG-AATATTCAAAATA---------------GG--CAC--------------------------------GCAAGTT--------------------------TATT----------CAC-----------GCCCACTCCAACGCCCACAATACGCCAAAAACTGTAGCGTCTACTGGA-----TTATAGCGTTCTTCATTGTTTTCATATAGAC------TC--------------TGG---------------------------TGTTCTTTTGCTTC-----------------------------------AAAACAAGACTCGAAGTACA
droTak1 scf7180000415145:7805-8020 - ATCTAGCCATGTCCGTCTGT----------CCGTCTGTCTGT----CTGTCC----GTTCCGATGAACGCTGAGATCTCGGAAACTACAAA-AGCTAG-AAGAGAT----TTTCCACACATATTCTAGG--GAA--------------------------------GTTTATT--------------------------T-TAT-CAAGGTGCCAC-----------GCCCCCTCTAACGCCCACACACCGCAAAAAGCCGTGGCGCCC--------------------------ACAGT----------------TTTCTGTA---------TAAA---------------CAGTACCAATTCC-------GT-GCCATAGATGGC---------------------------------------------
droEle1 scf7180000491104:2563253-2563345 + TTTCAATAACAATAGTTTTA----------AAATTTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------TCTCCAACAGGTGGCTAGAGGTGCTGCGCAGCACGACCCAAACCCAGGACTTTAAGAACA
droRho1 scf7180000772422:987-1215 - ATACTGTTCGAATTA--------------TATACATATTC------TCTTTC----ATTATTATAGACAAAAAAATAT------------------TTT-CCTAACAGTTTGTTTTTGTCT---TTTGA--AAA------------ATTGAATATAAATTTGGTACATTTATT------AAACTTAGTAATATAAACAA-------------------------------------------------------------------------------------------GAATTTTTAA----------------TTACCACA---------TATT---------------AAAATTTGCTTCTT------TCTAAAACAGGTGGCTGGAAGTGCTGCGAAGCACGACCCAAACACAGGACTTCAAGAACG
droFic1 scf7180000453850:121772-121842 + TAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TTT-------CTTCCAACAGGTGGCTGGAAGTGCTGCGCAGCACGACACAAACCCAGGACTTCAAGAACA
droKik1 scf7180000302317:943-1048 - ATCTAGCCATGTCCGTCTGT----------CCGTCTGTTCGTCCGTCTGTCCGTCCGTCTATCTGAATGA------AAC-------------------------------------------------------------------TTTGCATATAGT--------------------------------------------------------------------------------------------------------------------------------------------------------C------TT--------------CTA---------------------------TATACTCTCACTGC--------------------------------------------TATATATGTCG
droAna3 scaffold_13137:846841-846963 - ATATGAGCATGTCTGTCTGT----------CTGTCTGTTTCTACGCAAACTAGTCTCTCAG----------------TTGGAGGCTGCAGGACGC-TGCAGGTGATATTTCATCATTGGAGGTA---GT--TGA---------------GGA-------C------GTCGATTTCTA-------------------------TT-CATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395625:8116-8257 + ATATGAGCATGTCCGTCTGT----------CCGTCTGTCTGTCTGTCTGTCCGTCTGTCTGTATCG--------CAAAC-------------------------------------------------------------------ATCGGATATAGTTG------GCCGATCCTTATCTGAA-TAGGAATATATAATCCAATT-TATTACAATACAAAATCTAAAA-----------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCC
dp5 2:22024498-22024573 - TAACTTTGGTTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------ATCTTCATAGATGGCTGGAGGTTTTGCGGAGCACCACACAGACCCAAGACTTTAAGAACA
droPer2 scaffold_3:4805975-4806050 - TAACTTTGGTTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------ATCTTCATAGATGGCTGGAGGTTTTGCGGAGTACCACACAGACCCAAGACTTTAAGAACA
droWil2 scf2_1100000004521:10491500-10491640 + ATCTAGCCATGTCCGTCCGT----------CCATCCG------------TCC----GTTCGTATGAACATCTAGATCTCGGAGACTATAAG-AGTTAG-AGGCACCAAATTT---------------GG--TAC--------------------------------TTAGATT--------------------------TGTTT-AGTATT-------------------------------------------------------------------------------------------CGCGCAGATTATGATT-AT-TA---------AAAA---------------G---------------TTTTGCCAC-------------------------------------------------------
droVir3 scaffold_12942:29835-29996 + ATCTAGCCATGTCCGTCTGT----------CTGTCTGTCCGT----CTGTCC----GTATGTATGAACGCAAGGATCTCAGAACCTATAAG-AGCTAG-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GTTTC---------CGAT---------------AACT---------------------------------------------------------------TACTCCGTTTTCA
droMoj3 scaffold_6540:34089821-34089919 + ATTTGGCCCTGTATGTATGT----------ACGTATGTCTGTCCGTCTGTCC----GTATGTATGAACGCGTCGATTTCAGAAGATATTAG-AGCTAG-AGACTT---------------------------------------------------------------CAATT--------------------------TTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:5123994-5124051 + TCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGTGGTTAGAAGTGCTGCGTAGCACTACCCAAACACAGGACTTTAAGAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATCTGGACCTGT--GTCCGGCCAGATATGTACATATGTGT------CTCTCC----ACCCTTATGAACATTAAGATAT------------------AGT-ACGCATATTATATGTTTGCACATGCTAGG--GAC--------------------------------GTTGATT--------------------------TCTTT-CATTTTAATATGTGTTCTAAAA-----------AGTGCTCCCACT------AGC----------------TGA----------GCAACCCTTGGC----------------TTACCTTT---------TAAT---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................TATGAACATTAAGATAT------------------AGT-ACGCATA.....................................................................................................................................................................................................................................................................................................................................2712.00200000000100010000
.........................................................................................................................................................................................................................................................................................................................................................................TTTT-------GTTTTCATAGATGGCTGGAGGTA.....................................2711.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCCAAACCCAGGACTTCAAG....2411.00100010000000000000
...................................................................................................................................................................................................................................................................................TGA----------GCAACCCTTGGC----------------TTACC...............................................................................................................2011.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGC.................................1811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................TAAT---------------AACTTTCAATTTT-------GTTTTCATAGAT................................................2911.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGGTACTGCGCAGCACAACCCA....................2211.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAGGACTTCAAGAAC.1911.00101000000000000000
............................................................................................................TATATGTTTGCACATGCTAGG--GA...........................................................................................................................................................................................................................................................................................................2311.00100000010000000000
...................................TGTGT------CTCTCC----ACCCTTATGA..............................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CATAGATGGCTGGAGGTACTG..................................2111.00100000000000010000
.....................................TGT------CTCTCC----ACCCTTATGAACATTAAGA.....................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................TTT-------GTTTTCATAGATGGCTGG..........................................2111.00100000000100000000
droSec2
ATCTGGACCTGT--GTCCGGCCAGATATGTACATATGTTT------CTCTCC----ACCCTTATGAACAATAAGATAT------------------AGT-ACGCATATTGTATGTTTGCACATGCTAGG--GAC--------------------------------GTTGATT--------------------------CCTTT-CATTTTAATATGTGTTCTAAAA-----------AGTGTTCCCACT------AGC----------------TGA----------GCAACCCTTGGC----------------TTACCTTT---------TAAT---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................A-----------AGTGTTCCCACT------AGC----------------TGA----------GCAACCC.........................................................................................................................................2611.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCGCAGCACAACCCA....................2011.0011000
...............................................................................................................................................................................................................................................GTGTTCCCACT------AGC----------------TGA----------GCAACCCT........................................................................................................................................2511.0011000
...........................................................................................................................................................................................................................................................................................................................................................................TT-------GTTTTCATAGATGGCTGGA.........................................2111.0010010
........................................................................................................................................................................................................................................................................................................................................................................................TCATAGATGGCTGGAGGTACT...................................2111.0010010
..............................................................................................................................................................................................................................................AGTGTTCCCACT------AGC----------------TGA----------GC..............................................................................................................................................2011.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTCATAGATGGCTGGAGG.......................................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................................................TTTCATAGATGGCTGGAGGTA.....................................2111.0010010
......................................................................TAAGATAT------------------AGT-ACGCATATTGTATG..............................................................................................................................................................................................................................................................................................................................2511.0011000
......ACCTGT--GTCCGGCCAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
GTTGATTTTTT-TCATTTTA----------ATATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTAAAA-----------ATTGCTCCCACC------ACC----------------TGA----------GTAACCCTTGGC----------------TTACCTTTAAATGTATTTAAA---------------AACTTTCAATTTT-------GTTTTCATAGATGGCTGGAGGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTCATAGATGGCTGGAGGTA.....................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GTTTTCATAGATGGCTGGAGG.......................................2113.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATTTT-------GTTTTCATAGATGGCT............................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTGGAGGTACTGCGC...............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TT-------GTTTTCATAGATGGCTGG..........................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCATAGATGGCTGGAGGTACTGCGC...............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCCAAACCCAGGACTTCAAGAACG2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGCAGCACAACCCAA...................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGAGGTACTGCGCAGCA...........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGAGGTACTGCGC...............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GTTTTCATAGATGGCTGGAGGTACT...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAGATGGCTGGAGGTACTGCG................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGC.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGCGCAGCACA.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGTACTGCGCAGCACA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGAGGTACTGCGCAGC............................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTGGAGGTACTGCGCA..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGTACTGCGCAGCACA.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTGGAGGTACTGCGCAG.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTT-------GTTTTCATAGATGGCTGT..........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTCATAGATGGCTGGAGGG......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TACTGCGCAGCACAACCCAAACCCAGGACT.........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCCAAACCCAGGACTTCAAGAAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAAACCCAGGACTTCAAG....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTGGAGGTACTGCGCAGCA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTACTGCGCAGCACAACCCAAACC................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGCGC...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTTCATAGATGGCTGGAGGTACTGC.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGCGCAGCA...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATAGATGGCTGGAGGTACTGCGC...............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................AATTTT-------GTTTTCATAGATGGCTGGAG........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCCAAACCCAGGACTTCAA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TT-TCATTTTA----------ATATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTTTT-TCATTTTA----------AT................................................................................................................................................................................................................................................................................................................................................................................................................16130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
droEre2
TAAGTGC---------------------------------------CTGTCC----GCCCGTATGAACGTCGAGATCTTG------------------C-ACGCATATTCTA---------------AACCTATGTTTAATTTGTT--------------------GATATTT--------------------------TTTTC-AATTTTATTATTTTTCTTGCAAATT---------TCTTTCGATGTTTTAAAACGTTTTGTGTATACTAGACGAAACTATATCGCTCGCTCTTGTT----------------TCATATTTCAATGTAAATAGAAACGCATGTAATAATAACTTCAAATTTT-------ATATTCATAGATGGCTGGAGGTACTGCGCAGCACGACCCAAACCCAGGACTTCAAGAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTACTGCGCAG.............................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGTACTGCGCAGCAC..........................2111.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................AGATGGCTGGAGGTACTGCGC...............................2111.0010000010
droYak3
ATCTGGCCATGTCCGTCTGT----------CCGTCCGTCTGT----------------------------CGAGATCTCAGGAACTATAAAATACTAG-AAAGTTTAGATTAAGCTTACAGACTTCAGA--GAC--------------------------------ATGTTCC-----------------------------------------AC-----------GCCCACTCTAACACCCACAAACCGCCCAAAACTGCCATGCCC--------------------------ACACT--------TTTGAAAAAT-GT-TT---------TAAT---------------ATTTTTTC------------ATTTT-------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CTGGCCATGTCCGTCTGT----------CCGTCC............................................................................................................................................................................................................................................................................................................................................................................................................24200.10200200000000
...................................................................................................................................................................................................................................................................TGCCATGCCC--------------------------ACACT--------TTTG........................................................................................................................19200.05101000000000
...........................................................................................................................................................................................................................................TAACACCCACAAACCGCCCAAAACTGCC.........................................................................................................................................................................28200.05100100000000
...................................................................................................................................................................................................................................................ACAAACCGCCCAAAACTGCCAT.......................................................................................................................................................................22200.05100100000000
.......CATGTCCGTCTGT----------CCGTCCGTCTGT----------------------------..........................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..........................................................................................................................................................................................................................................CTAACACCCACAAACCGCCCAAAACT............................................................................................................................................................................26200.05101000000000
droEug1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CTGTTTATAGATGGCTGGAAGTACTGCGCAGTACGACTCAAACCCAGGACTTCAAGAATASizeHit CountTotal NormTotal
No Reads
droBia1
ATCTAGCCATGTCTGTCTGT----------CTGTCTG--------------------TCCGTATAAACGCTGAGATCTCGGAAACTATAAG-TACTAG-AATATTCAAAATA---------------GG--CAC--------------------------------GCAAGTT--------------------------TATT----------CAC-----------GCCCACTCCAACGCCCACAATACGCCAAAAACTGTAGCGTCTACTGGA-----TTATAGCGTTCTTCATTGTTTTCATATAGAC------TC--------------TGG---------------------------TGTTCTTTTGCTTC-----------------------------------AAAACAAGACTCGAAGTACASizeHit CountTotal NormTotal
No Reads
droTak1
ATCTAGCCATGTCCGTCTGT----------CCGTCTGTCTGT----CTGTCC----GTTCCGATGAACGCTGAGATCTCGGAAACTACAAA-AGCTAG-AAGAGAT----TTTCCACACATATTCTAGG--GAA--------------------------------GTTTATT--------------------------T-TAT-CAAGGTGCCAC-----------GCCCCCTCTAACGCCCACACACCGCAAAAAGCCGTGGCGCCC--------------------------ACAGT----------------TTTCTGTA---------TAAA---------------CAGTACCAATTCC-------GT-GCCATAGATGGC---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTCAATAACAATAGTTTTA----------AAATTTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------TCTCCAACAGGTGGCTAGAGGTGCTGCGCAGCACGACCCAAACCCAGGACTTTAAGAACASizeHit CountTotal NormTotal
No Reads
droRho1
ATACTGTTCGAATTA--------------TATACATATTC------TCTTTC----ATTATTATAGACAAAAAAATAT------------------TTT-CCTAACAGTTTGTTTTTGTCT---TTTGA--AAA------------ATTGAATATAAATTTGGTACATTTATT------AAACTTAGTAATATAAACAA-------------------------------------------------------------------------------------------GAATTTTTAA----------------TTACCACA---------TATT---------------AAAATTTGCTTCTT------TCTAAAACAGGTGGCTGGAAGTGCTGCGAAGCACGACCCAAACACAGGACTTCAAGAACGSizeHit CountTotal NormTotal
No Reads
droFic1
TAACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TTT-------CTTCCAACAGGTGGCTGGAAGTGCTGCGCAGCACGACACAAACCCAGGACTTCAAGAACASizeHit CountTotal NormTotal
No Reads
droKik1
ATCTAGCCATGTCCGTCTGT----------CCGTCTGTTCGTCCGTCTGTCCGTCCGTCTATCTGAATGA------AAC-------------------------------------------------------------------TTTGCATATAGT--------------------------------------------------------------------------------------------------------------------------------------------------------C------TT--------------CTA---------------------------TATACTCTCACTGC--------------------------------------------TATATATGTCGSizeHit CountTotal NormTotal
No Reads
droAna3
ATATGAGCATGTCTGTCTGT----------CTGTCTGTTTCTACGCAAACTAGTCTCTCAG----------------TTGGAGGCTGCAGGACGC-TGCAGGTGATATTTCATCATTGGAGGTA---GT--TGA---------------GGA-------C------GTCGATTTCTA-------------------------TT-CATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TGTCTGT----------CTGTCTGTTTCTACGCAAA...............................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.................TGT----------CTGTCTGTTTCTACGCAAACTAG...........................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droBip1
ATATGAGCATGTCCGTCTGT----------CCGTCTGTCTGTCTGTCTGTCCGTCTGTCTGTATCG--------CAAAC-------------------------------------------------------------------ATCGGATATAGTTG------GCCGATCCTTATCTGAA-TAGGAATATATAATCCAATT-TATTACAATACAAAATCTAAAA-----------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCCSizeHit CountTotal NormTotal
No Reads
dp5
TAACTTTGGTTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------ATCTTCATAGATGGCTGGAGGTTTTGCGGAGCACCACACAGACCCAAGACTTTAAGAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGTTTTGCGGAGC............................1912.0020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGTTTTGCGGAGCAC..........................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................ATCTTCATAGATGGCTGGAG........................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTTTTGC.................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGAGGTTTTGCGGAGC............................2011.0010100000000
droPer2
TAACTTTGGTTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------ATCTTCATAGATGGCTGGAGGTTTTGCGGAGTACCACACAGACCCAAGACTTTAAGAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................ACCACACAGACCCAAGACTTTAAGAAC.2713.003300000
................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGAGGTTTTGCGGAGT............................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGGAGGTTTTGCGGAG.............................2211.001000001
droWil2
ATCTAGCCATGTCCGTCCGT----------CCATCCG------------TCC----GTTCGTATGAACATCTAGATCTCGGAGACTATAAG-AGTTAG-AGGCACCAAATTT---------------GG--TAC--------------------------------TTAGATT--------------------------TGTTT-AGTATT-------------------------------------------------------------------------------------------CGCGCAGATTATGATT-AT-TA---------AAAA---------------G---------------TTTTGCCAC-------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.TCTAGCCATGTCCGTCCGT----------CC................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................................TAGATCTCGGAGACTATAAG-AG..................................................................................................................................................................................................................................................................................................................................................22200.05101000
droVir3
ATCTAGCCATGTCCGTCTGT----------CTGTCTGTCCGT----CTGTCC----GTATGTATGAACGCAAGGATCTCAGAACCTATAAG-AGCTAG-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GTTTC---------CGAT---------------AACT---------------------------------------------------------------TACTCCGTTTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................G-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGATGT----------..............................................................................................................................................................................................................2617.007000000002000000000000000000001000040000000000000000000000000000
...............................................................................................TAG-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGA...........................................................................................................................................................................................................................2515.005000000002000000000000000100000000020000000000000000000000000000
...............................................................................................TAG-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGATG.........................................................................................................................................................................................................................2713.003000000000000000000000000010001000010000000000000000000000000000
.................................................................................................G-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGA...........................................................................................................................................................................................................................2313.003000000000000000000000000000000000030000000000000000000000000000
...............................................................................................TAG-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGAT..........................................................................................................................................................................................................................2612.002000000000000000000000000000000000020000000000000000000000000000
.................................................................................................G-AGACTT----------------------------------------------------------------GATT--------------------------T--TTGAATTTAGAT..........................................................................................................................................................................................................................2412.002000000000000000000000000010000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTC---------CGAT---------------AACT---------------------------------------------------------------TACTCCGTTTTC.2420.501000000000000000000000000000010000000000000000000000000000000000
..........................................................................ATCTCAGAACCTATAAG-AGCT................................................................................................................................................................................................................................................................................................................................................21200.357000007000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAG.....................................................................................................................23200.357006000000000000000000000000000000000001000000000000000000000000
.........................................................TATGTATGAACGCAAGGATCTCAGAAC............................................................................................................................................................................................................................................................................................................................................................27200.255005000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ATCGAGTTT-GTTTC---------CGAT---------------AACT---------------------------------------------------------------TACT.........2650.201000000000000000000000000000000000010000000000000000000000000000
..........................................................ATGTATGAACGCAAGGATCTCAGAACC...........................................................................................................................................................................................................................................................................................................................................................27200.204004000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................T------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GTTTC---------C..................................................................................................26200.153003000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GCC----------------TGC----------GCA-----------------GATCGAGTTT-GT...............................................................................................................21200.153000000003000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTC---------CGAT---------------AACT---------------------------------------------------------------TACTCCGTTT...2270.141000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTC---------CGAT---------------AACT---------------------------------------------------------------TACTCCG......1970.141000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................TCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-G................................................................................................................27200.102000000002000000000000000000000000000000000000000000000000000000
.........................................................TATGTATGAACGCAAGGATC...................................................................................................................................................................................................................................................................................................................................................................20200.102000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CC----------------TGC----------GCA-----------------GATCGAGTTT-GTTTC---------CGA................................................................................................26200.102000000002000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------T............................................................................................................................................................24200.102000000010000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................TTAGATGT----------A-----------GGTGCTCCTAGT------GC..............................................................................................................................................................................23200.102000000000000000000000000000000000000000200000000000000000000000
....................................................................................................................................................................................................................................................CCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GT...............................................................................................................27200.102000000000000000000000000000000000020000000000000000000000000000
........................................................GTATGTATGAACGCAAGGATCTCAGAAC............................................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000000002000000000000000000000000000000000
................................................................GAACGCAAGGATCTCAGAACCTATAAG-AGCT................................................................................................................................................................................................................................................................................................................................................31200.102000000000000000000000000000000000000000000000200000000000000000
...................................................................................................................................................................................................................................................TCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GT...............................................................................................................28200.102001000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................TTAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------TG...........................................................................................................................................................26200.102001000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................TTTAGATGT----------A-----------GGTGCTCCTAGT------GC..............................................................................................................................................................................24200.102000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ATCGAGTTT-GTTTC---------CGAT---------------AACT---------------------------------------------------------------A............23110.091000000000000000000000000000001000000000000000000000000000000000
...................................................................................CCTATAAG-AGCTAG-AGACTT----------------------------------------------------------------GATT--------------------------T--......................................................................................................................................................................................................................................25120.081000000000000000000000000010000000000000000000000000000000000000
...................................................................................CCTATAAG-AGCTAG-AGACTT----------------------------------------------------------------GATT--------------------------.........................................................................................................................................................................................................................................24120.081000000000000000000000000000000000000001000000000000000000000000
...................................TGTCCGT----CTGTCC----GTATGTA.................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
...............................................TGTCC----GTATGTATGAACGCAAGGATC...................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTTAGATGT----------A-----------GGTGCTCCTAGT------GC..............................................................................................................................................................................25200.051000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TAGT------GCC----------------TGC----------GCA-----------------GATCGAGTTT-GT...............................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTTAGATGT----------A-----------GGTGCTCCTAGT------................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000001
..........................................................ATGTATGAACGCAAGGATCTC.................................................................................................................................................................................................................................................................................................................................................................21200.051000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGC----------GCA-----------------GATCGAGTTT-GTTTC---------CGA................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
........ATGTCCGTCTGT----------CTGTCTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
......CCATGTCCGTCTGT----------CTGTCT............................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------.............................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTCCTAGT------GCC----------------TGC----------GCA-----------------GATCGAGT....................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................T------GCC----------------TGC----------GCA-----------------GATCGAGTTT-G................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...TAGCCATGTCCGTCTGT----------CTGT..............................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
........................................................................GGATCTCAGAACCTATAAG-AGCTAG-AG...........................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
............CCGTCTGT----------CTGTCTGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
...................................TGTCCGT----CTGTCC----GTATGT..................................................................................................................................................................................................................................................................................................................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
..........................................................ATGTATGAACGCAAGGATCTCA................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CC----------------TGC----------GCA-----------------GATCGAGTTT-GTT..............................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................TTTAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------TG...........................................................................................................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................CTCCTAGT------GCC----------------TGC----------GCA-----------------GATCG.......................................................................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
.............................................................................TCAGAACCTATAAG-AGCTAG-AGA..........................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................TGTATGAACGCAAGGATCTCAG...............................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000100000000000000000000000
...................T----------CTGTCTGTCCGT----CTGTCC----GTATGTA.................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TCCTAGT------GCC----------------TGC----------GCA-----------------GATCG.......................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTAGATGT----------A-----------GGTGCTCCTAGT------GCC----------------.............................................................................................................................................................24200.051000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................C----------GCA-----------------GATCGAGTTT-GTTTC---------CG.................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGC----------GCA-----------------GATCGAGTTT-GTT..............................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
....................................................................GCAAGGATCTCAGAACCTATAAG-AGC.................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...............................................TGTCC----GTATGTATGAACGCA.........................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................ATGTATGAACGCAAGGATCT..................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
ATTTGGCCCTGTATGTATGT----------ACGTATGTCTGTCCGTCTGTCC----GTATGTATGAACGCGTCGATTTCAGAAGATATTAG-AGCTAG-AGACTT---------------------------------------------------------------CAATT--------------------------TTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................GTATGTCTGTCCGTCTGTC.............................................................................................................................................................................................................................................................................................................................................................................................1950.201100000
.............................................TCTGTCC----GTATGTATGAACGCG.........................................................................................................................................................................................................................................................................................................................................................................22200.051000001
droGri2
TCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGTGGTTAGAAGTGCTGCGTAGCACTACCCAAACACAGGACTTTAAGAACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................AACACAGGACTTTAAGAACG2011.00110

Generated: 05/19/2015 at 02:41 PM