ID:

dsi_21505

 Coordinate:

2r:4796422-4796676 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.0 -55.9 -55.9

Flybase annnotation

exon [2r_4796319_4796421_+]; CDS [2r_4796319_4796421_+]; CDS [2r_4796677_4796930_+]; exon [2r_4796677_4797498_+]; intron [2r_4796422_4796676_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTCTTCTACCAATTCGGGCTGGGTCCCATTCCCTACTTTATTGGCGCAGGTAAGTTGTTGCGTGACTCCATTGTGTGTGCGCCTTCCAATAGCTCCATTAATCGTTATTGGGCCAGCTGCTCGTGCTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATTGGAATCGAATTGGGTTCAATGGCTGCCCAGCACACATTTGTTTACGACCACTAGATACGTTCCCAGACGCACTCTCCATATAATTGAATGGCTGATTTATTTTTAGAGCTCTTACTGATTCGATTTGTACTCTCCACTTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTG
**************************************************(((((..(((.(((((...((..((((((((.....((((((((..........))))))))((((...(((((...(((((.....(((((((((.......)))))))))...))))).)))))....))))......)))))))).)).)))))...........((((....))))......((((........))))((((.......))))))).))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................................................................................................................................TTGCAGAACTGTTCGAGG...................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCTCGTGCGTCGATGAAG.......................................................................................................................................................................................................................... 18 2 5 2.20 11 0 8 0 0 0 0 1 2 0 0
......CTACCAATTCGGGCTGGGTCCC....................................................................................................................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................TCTGCAATTAAGGCGGAA.................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...CTTCTACCAATTCGGGCTGGGTCCC....................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..TCTTCTACCAATTCGGGCTGG............................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................GCAGGTACGTTGTTGCGACA................................................................................................................................................................................................................................................................................................. 20 3 2 1.00 2 0 0 0 0 0 2 0 0 0 0
............ATTCGGGCTGGGTCCCATTCCCTA............................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............ATTCGGGCTGGGTCCCATTCCCT................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGTTCGAGGTGGCTCCCC............................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................ATCGTGCTTCGAAGA............................................................................................................................................................................................................................ 15 1 3 1.00 3 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CAGAACTGTTCGAGGTGGCTCCCC............................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TAGGGTTCAATGGCTG......................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................AGAACTGTTGGAGGTGGA.................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................TGACTGGCTGATATATTATTA......................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................GCTCGTGCGTCGATGAAGAG........................................................................................................................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TGATTCTGGTATTAAGG......................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................ATCAGCAGATACGTTCCCAG................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................TTCCATTTATACTCTCCA.......................................................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TGCAATCAAGGCAGAAATGGA............................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................TGGACGTGCTTCGAAGA............................................................................................................................................................................................................................ 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TAGGGTTCAATGGCT.......................................................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GTGAATCTGCAATTCGGGC........................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GGCTACGTCGATGGACAGCT.. 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................ATTGGAATCGAATTAG..................................................................................................................................................................................... 16 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................GGGTTCAATGGCTGGA....................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................ATGTCGTTGGGCAGC... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................TTTAGAGCTCTTTCT.............................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................ATGGATGATTTCTTTTTA......................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TAAGAAGATGGTTAAGCCCGACCCAGGGTAAGGGATGAAATAACCGCGTCCATTCAACAACGCACTGAGGTAACACACACGCGGAAGGTTATCGAGGTAATTAGCAATAACCCGGTCGACGAGCACGAAGCTTCTTCACTAAGACGTTAATTCCGCCTTAACCTTAGCTTAACCCAAGTTACCGACGGGTCGTGTGTAAACAAATGCTGGTGATCTATGCAAGGGTCTGCGTGAGAGGTATATTAACTTACCGACTAAATAAAAATCTCGAGAATGACTAAGCTAAACATGAGAGGTGAAACGTCTTGACAAGCTCCACCGAGGGGCGAGGCACCGGTACAGCTACCCGTCGAAC
**************************************************(((((..(((.(((((...((..((((((((.....((((((((..........))))))))((((...(((((...(((((.....(((((((((.......)))))))))...))))).)))))....))))......)))))))).)).)))))...........((((....))))......((((........))))((((.......))))))).))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................GTGTAAACAAATGCTGGTGATC............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAAACAATTGCTGGTAATAT........................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.....................CCGAGGGGAAGGGATGTAATA......................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................ATAAAAATCTTGAGACTGACAAA.......................................................................... 23 3 3 0.33 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................ACAGCTTCCCGTCGAAC 17 1 5 0.20 1 0 1 0 0 0 0 0 0
..............................................CGTCCACTCAACAATGC.................................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GGTCTGCGAGATAGGT.................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................GCTTACCCCAAGTTGCCCA.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................TGACAAGCTTCAGCGA................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................TCTGCACCGAGGGGC............................ 15 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 05:06 AM