ID:

dsi_215

 Coordinate:

node_19457:3660-3722 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -16.7 -16.6 -16.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DMRT1CLINER1-

Sense Strand Reads

TGGAAGGTATACCTCTCCAGCTCGGTCGCCAGAGCCCCGGATTTTAAGTGTGACGCATCTGTGGAGGTATTGGTCTGCTCCTTGGCTTTTTACACTCTTTTTCTGCTTCTCCTGCTCGTTTGTGGTCCTGTCTCTGTGTTTCCATGTTGCCCAGAATACCAGT
*************************************.((.........((((.(((.....(((((((..((((........))))...))).)))).....))).))....))..........))************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 GSM343915
embryo
 SRR902009
testis
 O002
Head
 O001
Testis
 M024
male body
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTGT.......................... 25 0 1 45.00 45 7 19 0 4 6 6 2 1 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGC...................................................................................................................................... 25 0 1 37.00 37 20 0 0 4 0 3 2 8 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCC................................................... 23 0 1 30.00 30 3 5 3 2 5 2 10 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCTG................................................. 25 0 1 26.00 26 2 1 2 0 5 3 7 5 1 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGTT....................... 25 0 1 25.00 25 7 14 0 2 2 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGCC..................................................................................................................................... 26 0 1 25.00 25 11 0 0 4 0 0 4 5 1 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 28 0 1 24.00 24 0 1 2 15 2 4 0 0 0 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGT........................ 24 0 1 21.00 21 12 3 0 1 3 2 0 0 0 0 0 0 0
.................................GCCCCGGATTTTAAGTGTGACGCATC........................................................................................................ 26 0 1 20.00 20 1 0 17 0 0 1 0 0 0 1 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCTGC................................................ 26 0 1 19.00 19 0 5 1 2 4 4 3 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCT.................................................. 24 0 1 16.00 16 1 6 2 2 1 2 0 0 1 0 1 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATGTT............... 26 1 1 15.00 15 0 6 0 0 8 1 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCG....................................................................................................................................... 24 0 1 14.00 14 10 0 0 1 0 0 2 0 1 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTGTG......................... 26 0 1 13.00 13 2 5 0 0 2 2 2 0 0 0 0 0 0
..........................................TTTAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 27 0 1 13.00 13 0 2 3 6 1 1 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTG........................... 24 0 1 13.00 13 2 3 0 1 1 5 1 0 0 0 0 0 0
............................................TAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 25 0 1 11.00 11 1 0 4 5 1 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTGTGTT....................... 28 0 1 10.00 10 0 1 0 4 3 2 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCAATGT................ 27 1 1 10.00 10 0 4 0 0 6 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCT............................ 23 0 1 9.00 9 1 6 0 0 1 1 0 0 0 0 0 0 0
...........................................TTAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 26 0 1 9.00 9 1 0 2 4 0 2 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTGTGT........................ 27 0 1 9.00 9 1 2 0 4 1 0 1 0 0 0 0 0 0
....................................CCGGATTTTAAGTGTGACGCATCTGT..................................................................................................... 26 0 1 8.00 8 0 0 8 0 0 0 0 0 0 0 0 0 0
.....................................CGGATTTTAAGTGTGACGCATCTGT..................................................................................................... 25 0 1 8.00 8 0 0 6 1 0 1 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGAGG................................................................................................ 26 0 1 8.00 8 0 2 0 3 1 1 0 1 0 0 0 0 0
............................................TAAGTGTGACGCATCTGTGGAGGTATT............................................................................................ 27 0 1 6.00 6 0 0 4 0 0 1 0 0 0 1 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGT.......................... 22 0 1 6.00 6 3 2 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAATGTTGC............. 25 1 1 6.00 6 0 4 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAATGTTGCCCA.......... 28 1 1 6.00 6 0 2 0 0 4 0 0 0 0 0 0 0 0
..............................AGAGCCCCGGATTTTAAGTGTGACGCA.......................................................................................................... 27 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGCCAGA.................................................................................................................................. 29 0 1 5.00 5 0 0 0 4 1 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCG....................................................................................................................................... 25 0 1 5.00 5 0 1 3 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCAATGT................ 28 1 1 5.00 5 0 3 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................CGTTTGTGGTCCTGTCTCTGTGTT....................... 24 0 1 5.00 5 0 2 0 1 1 1 0 0 0 0 0 0 0
..........................................TTTAAGTGTGACGCATCTGTGGAGGTAT............................................................................................. 28 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGA.................................................................................................. 24 0 1 4.00 4 0 0 0 2 1 1 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCCATGTTGCCCA.......... 28 0 1 4.00 4 0 0 0 1 0 2 0 1 0 0 0 0 0
............................................TAAGTGTGACGCATCTGTGGAGGTAT............................................................................................. 26 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0 0
...................................CCCGGATTTTAAGTGTGACGCATCTGT..................................................................................................... 27 0 1 4.00 4 0 0 3 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTC.................................................... 22 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGTTTC..................... 24 0 1 4.00 4 0 2 0 1 0 1 0 0 0 0 0 0 0
..........................................TTTAAGTGTGACGCATCTGTGGAGG................................................................................................ 25 0 1 4.00 4 0 0 0 3 0 1 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCGCCA.................................................................................................................................... 28 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGT......................................................................................................................................... 22 0 1 4.00 4 2 0 0 1 0 1 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCAATG................. 26 1 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATGTTG.............. 27 1 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCC.................... 24 0 1 3.00 3 1 0 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGTTT...................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTC............................. 22 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTG......................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGCCAG................................................................................................................................... 28 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGTTTCAA................... 26 1 1 3.00 3 0 1 0 0 2 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCGC...................................................................................................................................... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCTGCT............................................... 27 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0
...........................................TTAAGTGTGACGCATCTGTGGAGGTAT............................................................................................. 27 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGT...................................................................................................................................... 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTGGTCCTGTCTCTGTGTTTCAATGT................ 26 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGAGGT............................................................................................... 27 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0
....................................................................................................................CGTTTGTGGTCCTGTCTCTGTGT........................ 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCCA................... 25 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
....................................................................................................................CGTTTGTGGTCCTGTCTCTGTGTTTC..................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TTTAAGTGTGACGCATCTGTGGAGGT............................................................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAATGTTGCC............ 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCC.................... 23 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCAA................... 24 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATG................. 24 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
..............................AGAGCCCCGGATTTTAAGTGTGACGC........................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCAATG................. 27 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.................................GCCCCGGATTTTAAGTGTGACGCAT......................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................CGGATTTTAAGTGTGACGCATCTGTA.................................................................................................... 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATGT................ 25 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTTGGTCGCCAGA.................................................................................................................................. 29 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................AGCCCCGGATTTTAAGTGTGACGCAT......................................................................................................... 26 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
....................................................ACGCATCTGTGGAGGTATTGGTCTGC..................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGTT....................... 22 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................CCCGGATTTTAAGTGTGACGCATC........................................................................................................ 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................TGTGGAGGTATTGGTCTGCTC................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TACACTCTTTTTCTGCTTCTCC................................................... 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...........................................................TGTGGAGGTATTGGTCTGCTCC.................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTCGCCA.................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................CGTTTGTGGTCCTGTCTCTGTGTTT...................... 25 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGTTTCA.................... 25 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0
...............................GAGCCCCGGATTTTAAGTGTGACGCA.......................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCTGTCTCTGTGTTTCAATGTTGCCCA.......... 27 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...............TCCAGCTCGGTCGCCAGAGCCCCGGA.......................................................................................................................... 26 0 6 1.83 11 1 4 0 1 3 2 0 0 0 0 0 0 0
...............TCCAGCTCGGTCGCCAGAGCCCCGG........................................................................................................................... 25 0 6 1.17 7 5 0 0 1 0 1 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTT....................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................GGGACGCATCTGTGGAGG................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGT........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
TTGGAGGTATACCTCTCCAGCTCGGTCGC...................................................................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCTGTCTCTGTGTTTCCATGTTGCC............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGTGGAGGTATTGGTCT....................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCAAT.................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTA.................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCCATGTTG.............. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................TGACGCATCTGTGGAGGTATTGGT......................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGTTTCAA................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGTTTC..................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATGCT............... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................AGCCCCGGATTTTAAGTGTGGCGCA.......................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCGCA..................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................GAGCCCCGGATTTTAAGTATGACGCA.......................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCTA................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAGTGTTGCCCA.......... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCTTGTCTCT............................ 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................TAAGTGTGACGCATCTGTGGAGGT............................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCAATGTTGC............. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................CTCTTTTTCTGCTTCTCCT.................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................GAGCCCCGGATTTTAAGTGTGACGCATC........................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGTTTCAAA.................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTCTCTGTGTTTCCATGTTGC............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTGTCTGCTTCTCC................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTCTCTGTGTTTCCATGTTGCCCA.......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAATGTTG.............. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................TCCTGTCTCTGTGTTTCAATGTTGCCC........... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCT.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCCGTGTTTCAATGTT............... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCT........................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...AAGGTATACCTCTCCAGCTCGGTC........................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................TTAAGTGTGACGCATCTGTGGAGGT............................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGGTCCTGTCTCTGTGT........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTTCTGTCTCTGT.......................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCCATGTTGC............. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGGCGC...................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTGTGGTCCTGTCTCTGTGTTTCAATGT................ 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................ATCTGTGGAGGTATTGGTCTGCTCCT................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................GCCCCGGATTTTAAGTGTGACGCA.......................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTCTCTGTGTTTCAATGTTGCCCAGA........ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTGGTCCTGTCTCTGTGTTTCAATGTT............... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTTCCATGTTGCCCAGAATACCAG. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................TGTTAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGG.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGACGCATCTGTGGAGGTATTGGTC........................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTTTG.................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTCTCTGTGTTTCCATG................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCGGATTTTAAGTGTGACGCATC........................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCCTGTCTCTGAA......................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................TGTGGAGGTATTGGTCTGCTCCT................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGTGACGCATCTGTGGAGGTATTGG.......................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........TACCTCCCCAGCTCGGTCGCCAGA.................................................................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGTCTCTGTGTTTCCATGT................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................AGGTATTGGTCTGCTCCTTG............................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TATGGTCCTGTCTCTGTGTTTCCATG................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCAA................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCGCC..................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................GATCTGCTCGTTTGTGGTCCTGTCTCTG........................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTG......................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................CAGATTTTAAGTGTGACGCATCTGTA.................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCT..................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCAAT.................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................ATCTGTGGAGGTATTGGTCTG...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................CCGGATTTTAAGTGTGACGCATCTGTG.................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................ATCTGTGGAGGTATTGGTCTGCTCC.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGTGACGCATCTGTGGAGGTATTGGTC........................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................TAAGTGTGACGCATCTGTGG................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGAGGGA.............................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTTGTGGTCCTGTCTCTGTGTT....................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GACGCATCTGTGGAGGTATTGGTCTGC..................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCGTTTGTGGTCTTGTCTCTGTGTT....................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGTTTGTGGTCCTGTCTCTGTGTTA...................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCACACTCTTTTTCTGCTTCTCCTGCT............................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTTAAGTGTGACGCATCTGTGGAG................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CCTGTCTCTGTGTTTCCATGTTGCCCA.......... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTTCTCCTGCTCT............................................. 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TGGTCCTGCCTCTGTGTTTCAATGTT............... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................ATTTTAAGTGTGACGCATCTGTGGAGGTA.............................................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................TGTCTCTGTGTTTCAATGTTGCT............ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGCATCTGTGGAGGT............................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCCTTTTCTGCTTCT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................AGCCCCGGATTTTAAGTGTGACGCA.......................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....AGGTATACCTCGCCAGCTCGGTCGC...................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................TCTGTGGAGGTATTGGTCTGCTCCTTGA.............................................................................. 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................CCCCGGATTTTAAGTGTGACGCAT......................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................TAAGTGTGACACATCTGTGGAGGTA.............................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTTG....................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGTCCTGTCTCTGTGT........................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTTTAAGTGTGACGCATCTGTGGAG................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGTGGTCCTGTCTCTGTGTTTCCATG................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TCTGTGGAGGTATTGGTCTGCTCC.................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....AGGTATACCTCTCCAGCTCGGTC........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................GCCCCGGATTTTAAGTGTGACGCATCTGT..................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................GTGACGCATCTGTGGAGGTATTGGTC........................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTCTTTTGTGGTCCTGTCTCTGTGCC....................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGG.......................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...AAGGTATACCTCTCCAGCTCGGTCGT...................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................ATCTGTGGAGGTATTGGTCTGC..................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGCCCCGGA.......................................................................................................................... 23 0 9 0.78 7 0 5 0 0 2 0 0 0 0 0 0 0 0
.................CAGCTCGGTCGCCAGAGCCCCGGA.......................................................................................................................... 24 0 9 0.67 6 0 4 0 0 1 1 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGCCCCGGATT........................................................................................................................ 25 0 9 0.56 5 1 2 0 0 1 1 0 0 0 0 0 0 0
................................................................................................CTTTTTCTGCTTCTCCT.................................................. 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGAGCCCCGGATTGT...................................................................................................................... 15 1 6 0.50 3 0 2 0 0 0 1 0 0 0 0 0 0 0
..........ACCTCTCCACCTCGGTCGCCAGA.................................................................................................................................. 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCCTCTCCTG................................................. 25 1 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCCTCTC.................................................... 22 1 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................................CTTTTTCTGCTTCTCC................................................... 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCCTCTCCTGC................................................ 26 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TCTGTGCGTCCATGTTGCCC........... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................TTACACTCTTCTTCTGCTTCTTCT.................................................. 24 2 8 0.25 2 0 0 0 1 1 0 0 0 0 0 0 0 0
...........................................................TGTGGAGGTATTGGTCAC...................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATTGGTCTGCTCCTTG............................................................................... 17 0 17 0.24 4 4 0 0 0 0 0 0 0 0 0 0 0 0
....AGGTATACCGCTCCAGCTCGGTCGT...................................................................................................................................... 25 2 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTCTGCTTCTCCTGCTCG............................................. 18 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGC................................................................................................................................ 17 0 16 0.19 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCTCTAGAGCCGCGGATTTT...................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............TCCAGCTCGGTCGCCAGAGCCCCGGAT......................................................................................................................... 27 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................CCAGCTCGGTCGCCAGAGCCCCGGA.......................................................................................................................... 25 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............TCCAGCTCGGGCGCCAGAGCCCCGGA.......................................................................................................................... 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTCTTCTTCTTCTTCTGC................................................ 26 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCTCTGC.................................................... 22 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCTGCCTCTCC................................................... 23 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................CCAGCTCGGTCGCCAGAGCCCCGGAT......................................................................................................................... 26 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTCTTCTGCTCCTCCT.................................................. 24 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCTTTTTCGG.......................................................... 16 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGCCCCGG........................................................................................................................... 22 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGACCCCCGGATTT....................................................................................................................... 26 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................GGTCGCCAGAGCCCCGGA.......................................................................................................................... 18 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................CAGCTCGGTCGCCAGA.................................................................................................................................. 16 0 19 0.11 2 1 1 0 0 0 0 0 0 0 0 0 0 0
................CCAGCTCGGTCGCCAGAGCCCCG............................................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................CGAGCTCGGTCGCCAGAGCCC.............................................................................................................................. 21 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCCTTTTCTGCCTCTCC................................................... 23 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTACACTCATGTTCTGTTTCTCCTG................................................. 25 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....AGATATACCTCTCCAGCTCGGTCG....................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GTGGAGGGATTTGTCTGCT.................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......TATACCACTCCAGCTCGGTCGCCAG................................................................................................................................... 25 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................CAGAGCCCCGGATTG....................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGCCCCG............................................................................................................................ 21 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............TCCAGCTCGGTCGCCAGAG................................................................................................................................. 19 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGAGCCCC............................................................................................................................. 20 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....AGATATACCTCTCCAGCTCGGTC........................................................................................................................................ 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TATACCACTCCAGCTCGGTCGCCAGA.................................................................................................................................. 26 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............ACTCCAGCTCGGTCGCCA.................................................................................................................................... 18 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............CTCCAGCTCGGTCGCCAG................................................................................................................................... 18 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCGGTCGCCAGAGCC............................................................................................................................... 15 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........TACCTCCAGCTCGGTCGCCAGA.................................................................................................................................. 22 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............TCCAGCTCGGTCGCCAGA.................................................................................................................................. 18 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................TATTGGTCTGCTCCT................................................................................. 15 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTGGTCTGCTCCTTG............................................................................... 16 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................CAGCTCGGTCGCCAG................................................................................................................................... 15 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCGGTCGCCAGA.................................................................................................................................. 15 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................TATTGGTCTGCTCCTTGTCC............................................................................ 20 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................TCGGTCGCCAGAGCCCTGAAA......................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................GTATGTGCGACGCATCTGT..................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTTCCATATGGAGAGGTCGAGCCAGCGGTCTCGGGGCCTAAAATTCACACTGCGTAGACACCTCCATAACCAGACGAGGAACCGAAAAATGTGAGAAAAAGACGAAGAGGACGAGCAAACACCAGGACAGAGACACAAAGGTACAACGGGTCTTATGGTCA
************************************.((.........((((.(((.....(((((((..((((........))))...))).)))).....))).))....))..........))************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR902009
testis
 GSM343915
embryo
...........................................................................ACGAGGAACCGAAAAATGTGAGAA................................................................ 24 0 1 13.00 13 2 2 1 4 3 1 0 0 0 0
.........................................AAAATTCACACTGCGTAGACACCTCCAT.............................................................................................. 28 0 1 12.00 12 0 6 3 2 1 0 0 0 0 0
.......................................CTAAAATTCACACTGCGTAGACACCT.................................................................................................. 26 0 1 10.00 10 1 3 0 3 3 0 0 0 0 0
..............GAGGTCGAGCCAGCGGT.................................................................................................................................... 17 0 15 9.27 139 138 0 0 0 1 0 0 0 0 0
..........................................AAATTCACACTGCGTAGACACCTCCAT.............................................................................................. 27 0 1 7.00 7 0 3 0 2 2 0 0 0 0 0
.............................................TTCACACTGCGTAGACACCTCCAT.............................................................................................. 24 0 1 6.00 6 4 0 1 0 0 0 0 1 0 0
.........................................................................AGACGAGGAACCGAAAAATGTGAGAA................................................................ 26 0 1 6.00 6 0 1 2 1 1 1 0 0 0 0
............................................................................CGAGGAACCGAAAAATGTGAGAA................................................................ 23 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0
............................................................................CGAGGAACCGAAAAATGTGAGAAAAA............................................................. 26 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0
....................................GGCCTAAAATTCACACTGCGTAGACAC.................................................................................................... 27 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0
.........ATGGAGAGGTCGAGCCAGCGGTCT.................................................................................................................................. 24 0 1 4.00 4 1 0 0 2 1 0 0 0 0 0
..............GAGGTCGAGCCAGCGG..................................................................................................................................... 16 0 19 3.26 62 62 0 0 0 0 0 0 0 0 0
..............................................................................AGGAACCGAAAAATGTGAGAA................................................................ 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
...............................................CACACTGCGTAGACACCTCCATAACC.......................................................................................... 26 0 1 3.00 3 0 1 0 0 2 0 0 0 0 0
..........................................................................GACGAGGAACCGAAAAATGTGAGAA................................................................ 25 0 1 3.00 3 1 0 1 0 0 0 1 0 0 0
...........................................................................................................AGAGGACGAGCAAACACCAGGACAG............................... 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
..............................................................................AGGAACCGAAAAATGTGAGAAAAA............................................................. 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..........................................................................TACGAGGAACCGAAAAATGTGAGAA................................................................ 25 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0
.....................................................................................................AGACGAAGAGGACGAGCAAACACCAGGAC................................. 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................................................................................................................AGCAAACACCAGGACAGAGACACAAAGT.................... 28 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0
......................................................................................................................AAACACCAGGACAGAGACACAAAGT.................... 25 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0
...............................CTCGGGGCCTAAAATTCACACTGCGT.......................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................ACCAGGACAGAGACACAAAGT.................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................AAACACCAGGACAGAGACACAAAGGT................... 26 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
..................................................................................ACCGAAAAATGTGAGAA................................................................ 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................AATTCACACTGCGTAGACACCTCCATAA............................................................................................ 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...................................................................................CCGAAAAATGTGAGAA................................................................ 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................GAGGAACCGAAAAATGTGAGAA................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....TCCATATGGAGAGGTCGAGCCAGCGGT.................................................................................................................................... 27 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0
............................................ATTCACACTGCGTAGACACCTCCAT.............................................................................................. 25 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0
..............................................................................AGGAACCGAAAAATGTGAGAAA............................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................GGTCGAGCCAGCGGTCTCGGGGCCT.......................................................................................................................... 25 0 6 1.33 8 1 0 0 1 0 1 1 4 0 0
........................................................................CAGACGAGGAACCGAAAAATGTGAGAA................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ACACCAGGACAGAGACACAAAGTT................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................AGACGAAGAGGACGAGCAAACACCAGGA.................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................AAAAATGTGAGAAAAA............................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................CAGAGACACAAAGGTACAACGGGTCT........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...TTCCATATGGAGAGGTCGAGCCAG........................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................GCCTAAAATTCACACTGCGTAGACACCT.................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................GTCTCGGGGCCTAAAATTCACACTGCGT.......................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...TTCCATATGGAGAGGTCGAGCCA......................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................AAAATTCACACTGCGTAGACACCT.................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................AGCAAACACCAGGACAGAGACACAA....................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................CATGAGGAACCGAAAAATGTGAGAA................................................................ 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................AAAATTCACACTGCGTAAACACCTCCAT.............................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................CTGACGAGGAACCGAAAAATGTG.................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................AGGAACCGAAAAATGTGAGAAAGA............................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................ATTCACACTGCGTAGACACCTCCA............................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................AGAGACACAAAGTTACAACGGGTCTTATGGT.. 31 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................CTGCGTAGACACCTCCATAA............................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................AGCAAACACCAGGACAGAGACACAAAG..................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................CGAGCCAGCGGTCTCGGGGCCTAAAA...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................CTAAAATTCACACTGCGTAG........................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......ATATGGAGAGGTCGAGCCAGCGGT.................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................CACACTGCGTAGACACCTCCATAAC........................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................................GCAAACACCAGGACAGAGACACAA....................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GAGCAAACACCAGGACAGAGACACAA....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................AGGACTAGCAAACACCAGGACAGAGAC........................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................TCACACTGCGTAGACACCTCCATAACC.......................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................ACACTGCGTAGACACCTCCATAACCAG........................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................TGACGAGGAACCGAAAAATGTGAGAA................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................CCGAAAAATGTGAGAAAAAGACGAA....................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................AAAATTCACACTGCGTAGACA..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................CACGAGGAACCGAAAAATGTGAGAA................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................CGAAAAATGTGAGAAAAA............................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................AGGACGAGCAAACACCAGGACAGAGA............................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................CACACTGCGTAGACACCTCCAT.............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................CCTAAAATTCACACTGCGTAGACACCT.................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................GGACAGAGACACAAAGTTACAACGGGT.......... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................AGACACAAAGTTACAACGGGTCTTATGGT.. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............AGAGGTCGAGCCAGCGGTC................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................TCACACTGCGTAGACACCTCCAT.............................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................CACACTGCGTAGACACCTCCATAACCA......................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................AGACGAGGAACCGAAAAATG...................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................AAAGACGAAGAGGACGAGCAAACACCAGGA.................................. 30 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............................................TCACACTGCGTAGACACCTCCATAA............................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................CAGAGACACAAAGGTACAACG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................TTACGAGGAACCGAAAAATGTGAGAA................................................................ 26 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................ACGAAGAGGACGAGCAAACACCAGGACAG............................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................ACACCAGGACAGAGACACAAAGT.................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................ACAGAGACACAAAGTTACAACGGGT.......... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................GAGCCAGCGGTCTCGGGGCCTAAAAT..................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................TTCACACTGCGTAGACACCTCCATAA............................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................CAGCGGTCTCGGGGGCTCAAATTT................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................GACACAAAGTTACAACGGGTCTTATGGT.. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........ATGGAGAGGTCGAGCCAGCGGT.................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................CTCGGGGCCTAAAATTCACA................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................ACGAGGAACCGAAAAATGTG.................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................ACGAGCAAACACCAGGACAGAGA............................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................ACTGCGTAGACACCTCCATAACCAGA....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................CTAAAATTCACACTGCGTAGACAC.................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................ACTGCGTAGACACCTCCAT.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................GGGGCCTAAAATTCACACTGCGT.......................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................ACGAGGAACCGAAAAATGTGA................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................GAACCGAAAAATGTGAGAA................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGAGCCAGCGGTC................................................................................................................................... 18 0 15 0.73 11 11 0 0 0 0 0 0 0 0 0
.............ATAGGTCGAGCCAGCGGTC................................................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.............AGAGGTGGAGCCAGCGGTCT.................................................................................................................................. 20 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...............AGGTCGAGCCAGCGGT.................................................................................................................................... 16 0 16 0.38 6 6 0 0 0 0 0 0 0 0 0
..........ATTAGAGGTCGAGCCAGCGGT.................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............AGGTCGAGCCAGCGGTCTCGGGGCCT.......................................................................................................................... 26 0 6 0.33 2 0 0 1 0 0 1 0 0 0 0
.................GTCGAGCCAGCGGTCTCGGGGCCT.......................................................................................................................... 24 0 9 0.33 3 1 0 0 0 0 1 0 1 0 0
..............GAGGTCGAGCCAGCGGTCT.................................................................................................................................. 19 0 15 0.33 5 5 0 0 0 0 0 0 0 0 0
....................GAGCCAGCGGTCTCGGGGCCTAAA....................................................................................................................... 24 0 9 0.22 2 1 0 0 0 0 0 1 0 0 0
..............GAGGTCGAGCCAGCGGTCTCGGGGCCT.......................................................................................................................... 27 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...................CGAGCCAGCGGTCTCGGGGC............................................................................................................................ 20 0 14 0.14 2 2 0 0 0 0 0 0 0 0 0
.................................................................................AACCGAAAATAGTGAGAAAAAC............................................................ 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
...............AGGTCGAGCCAGCGGTCT.................................................................................................................................. 18 0 16 0.13 2 2 0 0 0 0 0 0 0 0 0
................GGTCGAGCCAGCGGT.................................................................................................................................... 15 0 16 0.13 2 2 0 0 0 0 0 0 0 0 0
...................CGAGCCAGCGGTCTCGGGGCCT.......................................................................................................................... 22 0 9 0.11 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................AGGACTGGGCCACAAAGGTA.................. 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
.................GTCGAGCCAGCGGTCTCGGGGCCTAA........................................................................................................................ 26 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.............ATCAGTCGAGCCAGCGGTCT.................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...............AGGTCGAGCCAGCGGTCTCGGGGC............................................................................................................................ 24 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0
........................CAGCGGTCTCGGGGCCAAAA....................................................................................................................... 20 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................CGAGGAACAGAAAAATGTGA................................................................... 20 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0
.................GTCGAGCCAGCGGTCTCGGGGC............................................................................................................................ 22 0 14 0.07 1 0 0 0 0 0 0 1 0 0 0
..............GAGGTCGAGCCAGCGGTCTC................................................................................................................................. 20 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGATCCAGCGGT.................................................................................................................................... 17 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGAGCCAGCAGT.................................................................................................................................... 17 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................AAAGACGGAGAGGACGA............................................... 17 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.............TGAGGTCGAGCCAGCGGTCT.................................................................................................................................. 20 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGAGCCAGCGAT.................................................................................................................................... 17 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
............GGGAGGTCGAGCCAGCGGT.................................................................................................................................... 19 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.....................AGCCAGCGGTCTCGGGG............................................................................................................................. 17 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...................CGAGCCAGCGGTCTCG................................................................................................................................ 16 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCTAGCCAGCGGT.................................................................................................................................... 17 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...............AGGTCGAGCCAGCGGTC................................................................................................................................... 17 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................CCAGCGGTCTCGGGGC............................................................................................................................ 16 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.................GTCGAGCCAGCGGTCT.................................................................................................................................. 16 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGAGCCAGCG...................................................................................................................................... 15 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..............GAGGCCGAGCCAGCGGT.................................................................................................................................... 17 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..............AAGGTCGAGCCAGCGGT.................................................................................................................................... 17 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..............GAGGTCGAGTCAGCGG..................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............ATGGTCGAGCCAGCGG..................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............GAGGCCGAGCCAGCGG..................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................TAAAATTCACAGTGC............................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_19457:3610-3772 + dsi_215 TGGAAGGTATACCTCTCCAGCTCGGTCGCCAGAGCCCCGGAT-TTTAAGTGTGACGCATCTGTGGA-GG-------TATTGGTCTGCTCCTTGGCTTTTTACACTCTTTTTCTGCTT----------------CTCCTGCTCGTTTGT-GGTCC------------------------TGTCTCTGTGTTTCCATG-----TTGCCCAGAATACCAGT
droSec2 scaffold_327:6862-7028 + TGGGAGTTATAATGATCCAGCTCGGTCGCCAGAGCCCCGTAT-TTAAAGTGTGACGCCTAAGCTG--GGGGTTGGCTATTGGTCTGCTCCTTGACTTTTTACACTCTAGTTCTGCTT----------------CTCCTGCTCGTTTGT-GGTGC--------------------------TCTCTTAGTTTCCAAG-----TTGCCCAAAATACCAGT
dm3 chr2R:688226-688400 + TGGGAGGTATACCGCTCCAGCTTGGTCGACAGAGCCCCGTAT-TTAAAGTGTGCCGCATAAGCTGA-TAGGTTGGCTATTGATCTGCTCCTTGACTTCTTACACTATTATTCTGCCT----------------TTCCAGCTCGTTTGT-GGTCC------------------------TGTCCCTGGGTTTCCATGGGATGTTGCCAATCATAACTGT
droEre2 scaffold_4929:23422950-23423122 - TGGGAGTTATACCGCTCCAGCTCGGTCGCCAGTGCCCCTGAT--TTAGGTGTACCGCGTGAGCGGT-GGGGTTGGCTATTGGTCTGCTCCTTGACCTTTAAC---------------ACC---------------------TTTAATT-AC-TAGCCCGAGCCT---TTTGGGTCTATTTTCGCTGTGATTCCATGAGTTGTCGTCAAA-ATTCTCAT
droYak3 2L:21180874-21181047 - TGGGAGTTATACCGCTCCTGCTCGGTCGCCAGAGCCCCGTTT--TTCGGTGTACCGCGTAAGCGGC-GGGTTTGGCTGTTAGTCGGCTCCTTGACCTTCGAC---------------ACC---------------------TATATTT-AC-TCGTCCCAACTT---GTTGGAGCTATTTTCGCAGGGATTCCATGCGCTGCTGCCAAGGATACTCGT
droEug1 scf7180000405417:1088-1212 - TGGGGGATATACCGCCCCTACTCGGTCGCCAGGGCCCCGTTT-CCAGAGTGCACCGCCGCGGCGGA-GGGGTTGGACTATGGTCGGGTCCATGACCTTGTGC---------------ACCGCTCCTACGATCTCGCCCGCCC----------------------------------------------------------------------------
droTak1 scf7180000412529:355-528 + TGGAAGCTATACCGCTCCTGCTCGGTCGCCAGAGCCCCAATT--TGCGGTGTGCCGCCTAGGCGGT-GGGGTTGCCTGTTAGTCCGCTCCTTGACCTTTTAAC--------------ACC---------------------TATTTTC-CCTTTGTGCAAACCG-----TGTCGGTGGTTCCGACCAGATTCCGAATCCTTTAGTCAAGGATTTGGAG
droEle1 scf7180000486764:6196-6366 + TGGTATTTATACCGCTCCTGCTCGGTTCCCATTGCCCCATTT---TTGGTGTGCCGCCTTGGCGTT-GGGGTTGGCTGATAGTCCGTTCCGTGACCTTTAAC---------------ATC---------------------TATTTTC-CC-CAGTGCTCACCA-----TGACGTGGTTTTCGTCGGAGTTCCAGGTCCTCCTGCCAAGCTGTTGCAG
droRho1 scf7180000777605:18954-19017 - TTGGTTCC------------------------------------------------------------------------------------------TCCCTCCCTTGTCACTCTT----------------TTCCCGCTCGTTTTT-CTTCT------------------------CTCCTCTCTGTATCTA-----------------------T
droKik1 scf7180000301685:14087-14260 + TGGGAGTTATACCGCTCCTGCTCGGTCGCCAGAGCCCCGTTT--AAGGGTGTACCGCA-GAGCGGC-GGTGTTGGCTGTTGGTCCGCTCCTTGACCTTTACC---------------ACC---------------------TATTTTA-TCCCCGTGCGGTCCGTATTTTGGGGTTT---TTTTCCCGAATCCGTTGCCTCCTGCCAAGGATTTGGGG
droAna3 scaffold_9226:9241-9370 - TGGGGGATATACCGCCCCTGCTCGGTCACCAGAGCCCCGTTTTCCAGCGTGCACCGCCGCGGCGGG-GGGGTTGGAAATCGGTCCGATCCATGACCTTGTGC---------------ACTGTTCCT---------------------T-----------------ATCTTGAGGTTC-TGTTCC---------------------------------T
droBip1 scf7180000395863:23358-23482 + TGGGGGATATACCGCCCCTACTCGGTCGCCAGAGCCCCGTTA-CCATGGTGCACCGCCGCGGCGGA-GGGGTTGGACAATGGTCGGATCCATGACCTTGTGC---------------ACTGCTCCTAGGATTCCGCCCGCTC----------------------------------------------------------------------------
droVir3 scaffold_4719:1183-1292 - TGGGAGTTTAACCGCTCCAGCTCGGTCGCCAGCGCCCCTTT----TTAGTACACCGCT-ATGCGGCAGGAGTTGAC--TTGGTCGGATCCGTGGCCTTCTGT---------------ACAATTTCT---------------------TGCCTC-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGAAGGTATACCTCTCCAGCTCGGTCGCCAGAGCCCCGGAT-TTTAAGTGTGACGCATCTGTGGA-GG-------TATTGGTCTGCTCCTTGGCTTTTTACACTCTTTTTCTGCTT----------------CTCCTGCTCGTTTGT-GGTCC------------------------TGTCTCTGTGTTTCCATG-----TTGCCCAGAATACCAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTGT...............................25145.0045001200641967000000
....AGGTATACCTCTCCAGCTCGGTCGC.............................................................................................................................................................................................25137.0037008200040320000000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCC.................................................................................23130.0030000100052523030000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCTG...............................................................................25126.002600570050132120000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTGTT............................25125.0025000000221407000000
....AGGTATACCTCTCCAGCTCGGTCGCC............................................................................................................................................................................................26125.0025005400040011100000
.........................................T-TTTAAGTGTGACGCATCTGTGGA-GG-------TA............................................................................................................................................28124.0024000000215140020000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTGT.............................24121.0021000000313212000000
.................................GCCCCGGAT-TTTAAGTGTGACGCATC..............................................................................................................................................................26120.0020000000000110171000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCTGC..............................................................................26119.001900030042540010000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCT................................................................................24116.001600000112621120000
....AGGTATACCTCTCCAGCTCGGTCG..............................................................................................................................................................................................24114.0014000200010010100000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTGTG..............................26113.001300020020522000000
...........................................TTTAAGTGTGACGCATCTGTGGA-GG-------TA............................................................................................................................................27113.001300000016210030000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTG................................24113.001300010011352000000
.............................................TAAGTGTGACGCATCTGTGGA-GG-------TA............................................................................................................................................25111.001100000015001040000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTGTGTT............................28110.001000000034120000000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCT.................................2319.00900000010611000000
............................................TTAAGTGTGACGCATCTGTGGA-GG-------TA............................................................................................................................................2619.00900000004021020000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTGTGT.............................2719.00900010014201000000
....................................CCGGAT-TTTAAGTGTGACGCATCTGT...........................................................................................................................................................2618.00800000000000080000
.....................................CGGAT-TTTAAGTGTGACGCATCTGT...........................................................................................................................................................2518.00800000001010060000
.........................................T-TTTAAGTGTGACGCATCTGTGGA-GG-------..............................................................................................................................................2618.00800100013210000000
.............................................TAAGTGTGACGCATCTGTGGA-GG-------TATT..........................................................................................................................................2716.00600000000010041000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGT...............................2216.00600000000213000000
..............................AGAGCCCCGGAT-TTTAAGTGTGACGCA................................................................................................................................................................2715.00500000000000050000
....AGGTATACCTCTCCAGCTCGGTCGCCAGA.........................................................................................................................................................................................2915.00500000014000000000
...AAGGTATACCTCTCCAGCTCGGTCG..............................................................................................................................................................................................2515.00500000001100030000
.............................................................................................................................................CGTTTGT-GGTCC------------------------TGTCTCTGTGTT............................2415.00500000011210000000
...........................................TTTAAGTGTGACGCATCTGTGGA-GG-------TAT...........................................................................................................................................2814.00400000000000040000
.........................................T-TTTAAGTGTGACGCATCTGTGGA-.......................................................................................................................................................2414.00400000012010000000
.......................................................................................................................................................TCC------------------------TGTCTCTGTGTTTCCATG-----TTGCCCA..........2814.00400100001020000000
.............................................TAAGTGTGACGCATCTGTGGA-GG-------TAT...........................................................................................................................................2614.00400000000001030000
...................................CCCGGAT-TTTAAGTGTGACGCATCTGT...........................................................................................................................................................2714.00400000001000030000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTC..................................................................................2214.00400000000001030000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCTCTGTGTTTC..........................2414.00400000001210000000
...........................................TTTAAGTGTGACGCATCTGTGGA-GG-------..............................................................................................................................................2514.00400000003010000000
...AAGGTATACCTCTCCAGCTCGGTCGCCA...........................................................................................................................................................................................2814.00400000000000040000
....AGGTATACCTCTCCAGCTCGGT................................................................................................................................................................................................2214.00400000001012000000
................................................................................................................................................TTGT-GGTCC------------------------TGTCTCTGTGTTTCC.........................2413.00300000001011000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTGTTT...........................2613.00300000000201000000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTC..................................2213.00300000002100000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTG..............................2313.00300000000003000000
....AGGTATACCTCTCCAGCTCGGTCGCCAG..........................................................................................................................................................................................2813.00300010000002000000
...AAGGTATACCTCTCCAGCTCGGTCGC.............................................................................................................................................................................................2613.00300000000000030000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCTGCT.............................................................................2713.00300000030000000000
............................................TTAAGTGTGACGCATCTGTGGA-GG-------TAT...........................................................................................................................................2713.00300000000000030000
....AGGTATACCTCTCCAGCTCGGTCGT.............................................................................................................................................................................................2513.00300000000003000000
.........................................T-TTTAAGTGTGACGCATCTGTGGA-GG-------T.............................................................................................................................................2712.00200000001010000000
.............................................................................................................................................CGTTTGT-GGTCC------------------------TGTCTCTGTGT.............................2312.00200000000101000000
................................................................................................................................................TTGT-GGTCC------------------------TGTCTCTGTGTTTCCA........................2512.00200200000000000000
.............................................................................................................................................CGTTTGT-GGTCC------------------------TGTCTCTGTGTTTC..........................2612.00200000000101000000
...........................................TTTAAGTGTGACGCATCTGTGGA-GG-------T.............................................................................................................................................2612.00200000002000000000
.................................................................................................................................................TGT-GGTCC------------------------TGTCTCTGTGTTTCC.........................2312.00200000000011000000
..............................AGAGCCCCGGAT-TTTAAGTGTGACGC.................................................................................................................................................................2612.00200000000000020000
.................................GCCCCGGAT-TTTAAGTGTGACGCAT...............................................................................................................................................................2512.00200000000000020000
.....................................CGGAT-TTTAAGTGTGACGCATCTGTA..........................................................................................................................................................2612.00200000000000020000
................................AGCCCCGGAT-TTTAAGTGTGACGCAT...............................................................................................................................................................2612.00200000000010010000
.....................................................ACGCATCTGTGGA-GG-------TATTGGTCTGC...................................................................................................................................2612.00200000000002000000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCTCTGTGTT............................2212.00200000001001000000
...................................CCCGGAT-TTTAAGTGTGACGCATC..............................................................................................................................................................2412.00200000000000020000
............................................................TGTGGA-GG-------TATTGGTCTGCTC.................................................................................................................................2112.00200000000002000000
...................................................................................................TACACTCTTTTTCTGCTT----------------CTCC.................................................................................2212.00200020000000000000
............................................................TGTGGA-GG-------TATTGGTCTGCTCC................................................................................................................................2212.00200000000002000000
....AGGTATACCTCTCCAGCTCGGTCGCCA...........................................................................................................................................................................................2712.00200010000001000000
.............................................................................................................................................CGTTTGT-GGTCC------------------------TGTCTCTGTGTTT...........................2512.00200000011000000000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCTCTGTGTTTCA.........................2512.00200000010010000000
...............................GAGCCCCGGAT-TTTAAGTGTGACGCA................................................................................................................................................................2612.00200000000000020000
...............TCCAGCTCGGTCGCCAGAGCCCCGGA.................................................................................................................................................................................2661.831100000031421000000
...............TCCAGCTCGGTCGCCAGAGCCCCGG..................................................................................................................................................................................2561.17700000001015000000
..................................................................................................TTACACTCTTTTTCTGCTT----------------.....................................................................................1911.00100000100000000000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCTCTGTGT.............................2111.00100000000001000000
........................................................................................................................................................CC------------------------TGTCTCTGTGTTTCCATG-----TTGCC............2511.00100000000001000000
............................................................TGTGGA-GG-------TATTGGTCT.....................................................................................................................................1711.00100000000001000000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTA..................................................................................2211.00100000000000010000
...................................................................................................................................................T-GGTCC------------------------TGTCTCTGTGTTTCCATG-----TTG..............2711.00100000001000000000
...................................................TGACGCATCTGTGGA-GG-------TATTGGT.......................................................................................................................................2411.00100000000000100000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTGTTTC..........................2711.00100000000100000000
...AAGGTATACCTCTCCAGCTCGGTCGCA............................................................................................................................................................................................2711.00100000000000010000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCTA...............................................................................2511.00100000001000000000
.........................................T-TTTAAGTGTGACGCATCTGT...........................................................................................................................................................2111.00100000000001000000
.............................................TAAGTGTGACGCATCTGTGGA-GG-------T.............................................................................................................................................2411.00100000001000000000
.......................................................................................................CTCTTTTTCTGCTT----------------CTCCT................................................................................1911.00100000000001000000
...............................GAGCCCCGGAT-TTTAAGTGTGACGCATC..............................................................................................................................................................2811.00100000000000010000
..................................................................................................................................................................................TGTCTCTGTGTTTCCATG-----TTGC.............2211.00100000000001000000
..................................................................................................................................................................................TGTCTCTGTGTTTCCATG-----TTGCCCA..........2511.00100000000001000000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCT...................................2111.00100000000001000000
..................................................................................................TTACACTCTTTTTCTGCT......................................................................................................1811.00100001000000000000
...AAGGTATACCTCTCCAGCTCGGTC...............................................................................................................................................................................................2411.00100000000000010000
............................................TTAAGTGTGACGCATCTGTGGA-GG-------T.............................................................................................................................................2511.00100000001000000000
.................................................................................................................................................TGT-GGTCC------------------------TGTCTCTGTGT.............................1911.00100000000001000000
...................................................................................................................................................T-GGTCC------------------------TGTCTCTGTGTTTCCATG-----TTGC.............2811.00100000001000000000
.........................................................ATCTGTGGA-GG-------TATTGGTCTGCTCCT...............................................................................................................................2611.00100000000001000000
.................................GCCCCGGAT-TTTAAGTGTGACGCA................................................................................................................................................................2411.00100000000000010000
..........................................................................................................................................................................................TGTTTCCATG-----TTGCCCAGAATACCAG.2611.00100000001000000000
....AGGTATACCTCTCCAGCTCGG.................................................................................................................................................................................................2111.00100000000001000000
...................................................TGACGCATCTGTGGA-GG-------TATTGGTC......................................................................................................................................2511.00100000000000010000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTTTG................................................................................2411.00100000000000010000
..................................................................................................................................................................................TGTCTCTGTGTTTCCATG-----.................1811.00100000000001000000
....................................CCGGAT-TTTAAGTGTGACGCATC..............................................................................................................................................................2311.00100000000000010000
.........................................................................................................................................TGCTCGTTTGT-GGTCC------------------------TGTCTCTGAA..............................2611.00100000000000010000
............................................................TGTGGA-GG-------TATTGGTCTGCTCCT...............................................................................................................................2311.00100000000001000000
.................................................TGTGACGCATCTGTGGA-GG-------TATTGG........................................................................................................................................2511.00100000000000010000
...................................................................................................................................................T-GGTCC------------------------TGTCTCTGTGTTTCCATG-----T................2511.00100000001000000000
.................................................................A-GG-------TATTGGTCTGCTCCTTG.............................................................................................................................2011.00100000000001000000
...AAGGTATACCTCTCCAGCTCGGTCGCC............................................................................................................................................................................................2711.00100000001000000000
................................................................................................................................................TTGT-GGTCC------------------------TGTCTCTGTG..............................1911.00100000010000000000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CT...................................................................................2111.00100000000000010000
.........................................................ATCTGTGGA-GG-------TATTGGTCTG....................................................................................................................................2111.00100000000100000000
....................................CCGGAT-TTTAAGTGTGACGCATCTGTG..........................................................................................................................................................2711.00100000000000010000
.........................................................ATCTGTGGA-GG-------TATTGGTCTGCTCC................................................................................................................................2511.00100000000001000000
.................................................TGTGACGCATCTGTGGA-GG-------TATTGGTC......................................................................................................................................2711.00100000001000000000
.............................................TAAGTGTGACGCATCTGTGG.........................................................................................................................................................2011.00100000000001000000
..............................................................................................................................................GTTTGT-GGTCC------------------------TGTCTCTGTGTT............................2311.00100000001000000000
....................................................GACGCATCTGTGGA-GG-------TATTGGTCTGC...................................................................................................................................2711.00100000001000000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCTCTGTGTTA...........................2611.00100000000100000000
...........................................TTTAAGTGTGACGCATCTGTGGA-G......................................................................................................................................................2411.00100000001000000000
........................................................................................................................................................CC------------------------TGTCTCTGTGTTTCCATG-----TTGCCCA..........2711.00100000001000000000
..................................................................................................TTACACTCTTTTTCTGCTT----------------CTCCTGCTCT...........................................................................2911.00100000010000000000
........................................AT-TTTAAGTGTGACGCATCTGTGGA-GG-------TA............................................................................................................................................2911.00100000000010000000
......................................................CGCATCTGTGGA-GG-------T.............................................................................................................................................1511.00100000000001000000
................................AGCCCCGGAT-TTTAAGTGTGACGCA................................................................................................................................................................2511.00100000000000010000
..........................................................TCTGTGGA-GG-------TATTGGTCTGCTCCTTGA............................................................................................................................2811.00100000000010000000
..................................CCCCGGAT-TTTAAGTGTGACGCAT...............................................................................................................................................................2411.00100000001000000000
.....................................................................................................................................................GGTCC------------------------TGTCTCTGTGT.............................1611.00100000000001000000
.........................................T-TTTAAGTGTGACGCATCTGTGGA-G......................................................................................................................................................2511.00100000001000000000
................................................................................................................................................TTGT-GGTCC------------------------TGTCTCTGTGTTTCCATG-----.................2711.00100100000000000000
..........................................................TCTGTGGA-GG-------TATTGGTCTGCTCC................................................................................................................................2411.00100010000000000000
....AGGTATACCTCTCCAGCTCGGTC...............................................................................................................................................................................................2311.00100000000001000000
.................................GCCCCGGAT-TTTAAGTGTGACGCATCTGT...........................................................................................................................................................2911.00100000001000000000
..................................................GTGACGCATCTGTGGA-GG-------TATTGGTC......................................................................................................................................2611.00100000000001000000
...AAGGTATACCTCTCCAGCTCGG.................................................................................................................................................................................................2211.00100000000000010000
...AAGGTATACCTCTCCAGCTCGGTCGT.............................................................................................................................................................................................2611.00100000000000010000
.........................................................ATCTGTGGA-GG-------TATTGGTCTGC...................................................................................................................................2211.00100000000001000000
..................AGCTCGGTCGCCAGAGCCCCGGA.................................................................................................................................................................................2390.78700000020500000000
.................CAGCTCGGTCGCCAGAGCCCCGGA.................................................................................................................................................................................2490.67600000010410000000
..................AGCTCGGTCGCCAGAGCCCCGGAT-T..............................................................................................................................................................................2590.56500000010211000000
.........................................................................................................CTTTTTCTGCTT----------------CTCCT................................................................................1720.50100000000001000000
.........................................................................................................CTTTTTCTGCTT----------------CTCC.................................................................................1630.33100000000001000000
............................................................TGTGGA-GG-------TATTGGTCAC....................................................................................................................................1840.25100000000001000000
............................................................................TATTGGTCTGCTCCTTG.............................................................................................................................17170.24400000000004000000
.............................................................................................................TTCTGCTT----------------CTCCTGCTCG...........................................................................1850.20100000000001000000
..................AGCTCGGTCGCCAGAGC.......................................................................................................................................................................................17160.19300000000003000000
...............TCCAGCTCGGTCGCCAGAGCCCCGGAT-...............................................................................................................................................................................2760.17100000000000010000
................CCAGCTCGGTCGCCAGAGCCCCGGA.................................................................................................................................................................................2560.17100000010000000000
................CCAGCTCGGTCGCCAGAGCCCCGGAT-...............................................................................................................................................................................2660.17100000001000000000
..................AGCTCGGTCGCCAGAGCCCCGG..................................................................................................................................................................................2290.11100000010000000000
.......................GGTCGCCAGAGCCCCGGA.................................................................................................................................................................................1890.11100000000001000000
.................CAGCTCGGTCGCCAGA.........................................................................................................................................................................................16190.11200000000101000000
................CCAGCTCGGTCGCCAGAGCCCCG...................................................................................................................................................................................23110.09100000000001000000
.............................CAGAGCCCCGGAT-TG.............................................................................................................................................................................15140.07100000000100000000
..................AGCTCGGTCGCCAGAGCCCCG...................................................................................................................................................................................21140.07100000000001000000
...............TCCAGCTCGGTCGCCAGAG........................................................................................................................................................................................19140.07100000000001000000
..................AGCTCGGTCGCCAGAGCCCC....................................................................................................................................................................................20140.07100000000001000000
..............CTCCAGCTCGGTCGCCAG..........................................................................................................................................................................................18150.07100000000001000000
.....................TCGGTCGCCAGAGCC......................................................................................................................................................................................15160.06100000010000000000
...............TCCAGCTCGGTCGCCAGA.........................................................................................................................................................................................18160.06100000000010000000
............................................................................TATTGGTCTGCTCCT...............................................................................................................................15170.06100000000001000000
.............................................................................ATTGGTCTGCTCCTTG.............................................................................................................................16180.06100000000001000000
.................CAGCTCGGTCGCCAG..........................................................................................................................................................................................15190.05100000000001000000
..................AGCTCGGTCGCCAGA.........................................................................................................................................................................................15190.05100000010000000000
droSec2
TGGGAGTTATAATGATCCAGCTCGGTCGCCAGAGCCCCGTAT-TTAAAGTGTGACGCCTAAGCTG--GGGGTTGGCTATTGGTCTGCTCCTTGACTTTTTACACTCTAGTTCTGCTT----------------CTCCTGCTCGTTTGT-GGTGC--------------------------TCTCTTAGTTTCCAAG-----TTGCCCAAAATACCAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................TTTTACACTCTAGTTCTGCTT----------------CTCC.................................................................................2516.0065010
..................................................................................................TTACACTCTAGTTCTGCTT----------------CTCC.................................................................................2315.0054010
..................................................................................................TTACACTCTAGTTCTGCTT----------------CTCCT................................................................................2414.0043010
................................................................................................TTTTACACTCTAGTTCTGCTT----------------CTC..................................................................................2413.0033000
.........................................................................................................................................TGCTCGTTTGT-GGTGC--------------------------TCTCTTAGT.............................2513.0032010
..................................................................................................TTACACTCTAGTTCTGCTT----------------CTCCTG...............................................................................2512.0022000
................................................................................................................................................TTGT-GGTGC--------------------------TCTCTTAGTTTCCAAG-----T................2611.0011000
.........................................................................................................................................TGCTCGTTTGT-GGTGC--------------------------TCTCTTAGTT............................2611.0011000
...........................................TTAAAGTGTGACGCCTAAGCTG--G......................................................................................................................................................2311.0010010
.........................................................................................................................................TGCTCGTTTGT-GGTGC--------------------------TCTCTTAG..............................2411.0010010
..................................................................................................TTACACTCTAGTTCTGCTT----------------CTC..................................................................................2211.0011000
........................................................................................................................................................................................TTAGTTTCCAAG-----TTGCCCAAAATAC....2511.0011000
.................................................................................................TTTACACTCTAGTTCTGCTT----------------.....................................................................................2011.0011000
..................................................................................................TTACACTCTAGTTCTGCTT----------------CTCCTGC..............................................................................2611.0011000
................................................................................................TTTTACACTCTAGTTCTGCTT----------------G....................................................................................2211.0011000
.................................................................................................TTTACACTCTAGTTCTGCTT----------------CTCCA................................................................................2511.0011000
........................................................................TGGCTATTGGTCTGCTCCTTGACT..........................................................................................................................24200.601211010
........................................................................TGGCTATTGGTCTGCTCCTTGACTT.........................................................................................................................25200.4088000
........................................................................TGGCTATTGGTCTGCTCCTTGACTTT........................................................................................................................26200.2555000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACT..........................................................................................................................25200.2044000
........................................................................TGGCTATTGGTCTGCTCCTTGA............................................................................................................................22200.1022000
........................................................................TGGCTATTGGTCTGCTCCTTGAC...........................................................................................................................23200.1022000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACTT.........................................................................................................................26200.1022000
.......................................................................TTGGCTATTGGTCTGCTCCTTGAC...........................................................................................................................24200.1022000
........................................................................TGGCTATTGGTCTGCTCCTTG.............................................................................................................................21200.1021010
.........................................................................GGCTATTGGTCTGCTCCTTGACTTT........................................................................................................................25200.0511000
.......................................................................TTGGCTATTGGTCTGCTCCTTGA............................................................................................................................23200.0511000
............................................................................TATTGGTCTGCTCCTTGACT..........................................................................................................................20200.0511000
.......................................................................TTGGCTATTGGTCTGCTCCTTG.............................................................................................................................22200.0510010
...............TCCAGCTCGGTCGCCAGAGCCCCG...................................................................................................................................................................................24200.0511000
........................................................................TGGCTATTGGTCTGCTCCTTGAAAA.........................................................................................................................25200.0510010
............................................................................TATTGGTCTGCTCCTTGACTT.........................................................................................................................21200.0511000
.......................................................................TTGGCTATTGGTCTGCTCCT...............................................................................................................................20200.0510010
........................................................................TGGCTATTGGTCTGCTCCTTGAAA..........................................................................................................................24200.0511000
............................................................................TATTGGTCTGCTCCTTGACTTTC.......................................................................................................................23200.0511000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACTTT........................................................................................................................27200.0511000
...............TCCAGCTCGGTCGCCAGAGC.......................................................................................................................................................................................20200.0510010
.......................................................................TTGGCTATTGGTCTGCTCCTT..............................................................................................................................21200.0511000
........................................................................TGGCTATTGGTCTGCTCCTTGAA...........................................................................................................................23200.0510010
........................................................................TGGCTATTGGTCTGCTCCTTGACA..........................................................................................................................24200.0511000
dm3
TGGGAGGTATACCGCTCCAGCTTGGTCGACAGAGCCCCGTAT-TTAAAGTGTGCCGCATAAGCTGA-TAGGTTGGCTATTGATCTGCTCCTTGACTTCTTACACTATTATTCTGCCT----------------TTCCAGCTCGTTTGT-GGTCC------------------------TGTCCCTGGGTTTCCATGGGATGTTGCCAATCATAACTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................TGGGTTTCCATGGGATGTTGC.............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCCCTGGGT.............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................TAAAGTGTGCCGCATAAGCTGA-TAGG...................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TAGGTTGGCTATTGATCTGCTCC................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTGCCT----------------TTCCAGCTCGTTTGT-GGTC.................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................CTTACACTATTATTCTGC.......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CTATTGATCTGCTCCTTGACTT.........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................T----------------TTCCAGCTCGTTTGT-GGTCC------------------------TGT.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTTCCATGGGATGTTGCCAATCATA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCCCTGGGTT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCTTGGTCGACAGAGCCCCGTAT-TT.............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCCCTGGGT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TGGGTTTCCATGGGATGTTGCCAATCAT......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................T----------------TTCCAGCTCGTTTGT-GGTCC------------------------TGTC....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................TCGTTTGT-GGTCC------------------------TGTCCCTGGG..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTCCAGCTCGTTTGT-GGTCC------------------------TGTCCCT.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CCAGCTCGTTTGT-GGTCC------------------------TGT.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGATCTGCTCCTTGACTTCTTACAC..................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTTGT-GGTCC------------------------TGTCCCTGGGTTTCC.........................2511.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TATTGATCTGCTCCTTGACTT.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATGGGATGTTGCCAATCATAA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................TAGGTTGGCTATTGATCTGCTCCT...............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGCCGCATAAGCTGA-TAGGTTGGCTA............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................CAGAGCCCCGTAT-TTAAAGTG.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGTCGACAGAGCCCCGTA.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGCCGCATAAGCTGA-TAGGTTGG...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGCTTGGTCGACAGAGCCCCGTAT-TT.............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................TTGGCTATTGATCTGCTCCTTGACT..........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCTTGGTCGACAGAGCCCCGTAT-T..............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TGACTTCTTACACTATTATTCTGCC......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CTATTGATCTGCTCCTTGACT..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TATACCGCTCCAGCTTGGTCGACAGAGC.......................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATAAGCTGA-TAGGTTGGCTAT...........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................TCTGCCT----------------TTCCAGCTCGTTTGT-GGT..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CATGGGATGTTGCCAATCATAACTG.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................CAGCTTGGTCGACAGAGCCC.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................TTTCCATGGGATGTTGCCAGC.........2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
TGGGAGTTATACCGCTCCAGCTCGGTCGCCAGTGCCCCTGAT--TTAGGTGTACCGCGTGAGCGGT-GGGGTTGGCTATTGGTCTGCTCCTTGACCTTTAAC---------------ACC---------------------TTTAATT-AC-TAGCCCGAGCCT---TTTGGGTCTATTTTCGCTGTGATTCCATGAGTTGTCGTCAAA-ATTCTCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
TGGGAGTTATACCGCTCCAGCTCGGT................................................................................................................................................................................................26131.151510000014
..........................................................................................................................................................................................TGATTCCATGAGTTGTCGTCAAA-ATTC....2711.0011000000
...................................................................................................................................................................................TTCGCTGTGATTCCATGAGTTGTCG..............2520.5010000100
........................................................................................................................................................................TTGGGTCTATTTTCGCTGTGATTCCATG......................2820.5011000000
.............................................................................................................................................................CGAGCCT---TTTGGGTCTATTTTCGCTG................................2620.5011000000
...................................................................................................................................................................................TTCGCTGTGATTCCATGAGT...................2030.3310000100
................................TGCCCCTGAT--TTAGGTGTACCGCGTG..............................................................................................................................................................2640.2511000000
.......TATACCGCTCCAGCTCGGTCGCCAG..........................................................................................................................................................................................25120.2533000000
..........................................................TGAGCGGT-GGGGTTGGCTATTGGTCA.....................................................................................................................................2660.1711000000
........................................................................TGGCTATTGGTCTGCTCCTTGACCTT........................................................................................................................26140.1422000000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACCTT........................................................................................................................27140.1422000000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACCT.........................................................................................................................26140.1422000000
......................................TGAT--TTAGGTGTACCGCGTGAGCG..........................................................................................................................................................2470.1410000100
..................................................GTACCGCGTGAGCGGT-GGGGTTG................................................................................................................................................2370.1411000000
.................................................TGTACCGCGTGAGCGGT-GGG....................................................................................................................................................20110.0911000000
......TTATACCGCTCCAGCTCGGTCGCCAG..........................................................................................................................................................................................26120.0810000010
.......TATACCGCTCCAGCTCGGTCGCCAGT.........................................................................................................................................................................................26120.0811000000
TGGGAGTTATACCGCTCCAGCTCGG.................................................................................................................................................................................................25130.0811000000
TGGGAGTTATACCGCTCCAGCTCGGC................................................................................................................................................................................................26130.0810000001
.........TACCGCTCCAGCTCGGTCGCC............................................................................................................................................................................................21140.0711000000
.......................................................................TTGGCTATTGGTCTGCTCCTTGACC..........................................................................................................................25140.0711000000
........................................................................TGGCTATTGGTCTGCTCCTTGACC..........................................................................................................................24140.0711000000
........................................................................TGGCTATTGGTCTGCTCCTTGACCT.........................................................................................................................25140.0711000000
..........................................................................GCTATTGGTCTGCTCCTTGACCT.........................................................................................................................23170.0611000000
...............................................................GGT-GGGGTTGGCTATTGGTCTGCTC.................................................................................................................................25200.0511000000
........................................................................TGGCTATTGGTCTGCTCCTTGAC...........................................................................................................................23200.0511000000
.............................................................GCGGT-GGGGTTGGCTATTGGTCTG....................................................................................................................................24200.0511000000
.......................................................................TTGGCTATTGGTCTGCTCCTTGAC...........................................................................................................................24200.0511000000
droYak3
TGGGAGTTATACCGCTCCTGCTCGGTCGCCAGAGCCCCGTTT--TTCGGTGTACCGCGTAAGCGGC-GGGTTTGGCTGTTAGTCGGCTCCTTGACCTTCGAC---------------ACC---------------------TATATTT-AC-TCGTCCCAACTT---GTTGGAGCTATTTTCGCAGGGATTCCATGCGCTGCTGCCAAGGATACTCGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................TCGAC---------------ACC---------------------TATATTT-AC-TCGTCCCAAC........................................................2715.00505000000000
.................................................................................................TCGAC---------------ACC---------------------TATATTT-AC-TCGTCCCAACT.......................................................2812.00202000000000
......TTATACCGCTCCTGCTCGGTCGCCA...........................................................................................................................................................................................2571.14808000000000
.........................................T--TTCGGTGTACCGCGTAAGCGGC-G......................................................................................................................................................2431.00303000000000
.................................................................................................TCGAC---------------ACC---------------------TATATTT-AC-TCGTCCCAACTT---...................................................2911.00101000000000
..............................................................................................................................................................................................TCCATGCGCTGCTGCCAAGGATACTC..2611.00101000000000
..................................................................................................................................................................TT---GTTGGAGCTATTTTCGCAGGGAT............................2511.00100000010000
......................................................................TTTGGCTGTTAGTCGGCTCCTTGACCT.........................................................................................................................2711.00101000000000
..........................................................................................................................................................................................GGATTCCATGCGCTGCTGCCAAGGAT......2611.00101000000000
............................................TTCGGTGTACCGCGTAAGCGGC-GGGT...................................................................................................................................................2611.00101000000000
.............................................................................................................................................TATATTT-AC-TCGTCCCAACTT---GTTGGAGC...........................................2911.00100100000000
..........................................................................................................................................................................................GGATTCCATGCGCTGCTGCCAAG.........2311.00101000000000
...........................................................................................TGACCTTCGAC---------------ACC---------------------TATATTT-AC-TCG...............................................................2611.00101000000000
......TTATACCGCTCCTGCTCGGTCGCCAG..........................................................................................................................................................................................2660.67404000000000
.......................................TTT--TTCGGTGTACCGCGTAAGCGGC-G......................................................................................................................................................2630.67202000000000
.............................................TCGGTGTACCGCGTAAGCGGC-GGG....................................................................................................................................................2430.67202000000000
TGGGAGTTATACCGCTCCTGCTCGGT................................................................................................................................................................................................2690.56501000000004
.......................................................................TTGGCTGTTAGTCGGCTCCTTGACCT.........................................................................................................................2620.50101000000000
......TTATACCGCTCCTGCTCGGTCGCC............................................................................................................................................................................................2470.43302100000000
........................................TT--TTCGGTGTACCGCGTAAGCGGC-G......................................................................................................................................................2530.33101000000000
........................................TT--TTCGGTGTACCGCGTAAGCGGC-.......................................................................................................................................................2430.33101000000000
....................................CCGTTT--TTCGGTGTACCGCGTAAGC...........................................................................................................................................................2530.33101000000000
.......................................TTT--TTCGGTGTACCGCGTAAGCGGC-AA.....................................................................................................................................................2730.33101000000000
.......TATACCGCTCCTGCTCGGTCGCCAGAGC.......................................................................................................................................................................................2860.33201000000001
............................................TTCGGTGTACCGCGTAAGCGGC-G......................................................................................................................................................2330.33100000010000
........................................TT--TTCGGTGTACCGCGTAAGCGGC-GG.....................................................................................................................................................2630.33101000000000
.........................................T--TTCGGTGTACCGCGTAAGCGGC-GGG....................................................................................................................................................2630.33101000000000
...............................GAGCCCCGTTT--TTCGGTGTACCGCG................................................................................................................................................................2540.25101000000000
.....................TCGGTCGCCAGAGCCCCGTTT--TTCGGTG.......................................................................................................................................................................2840.25101000000000
.........................TCGCCAGAGCCCCGTTT--TTCGGATA......................................................................................................................................................................2540.25101000000000
.......TATACCGCTCCTGCTCGGTCGCCAGA.........................................................................................................................................................................................2660.17101000000000
................CCTGCTCGGTCGCCAGAGCCCCGT..................................................................................................................................................................................2460.17101000000000
.........TACCGCTCCTGCTCGGTCGCCAGAGC.......................................................................................................................................................................................2660.17101000000000
..............CTCCTGCTCGGTCGCCAGAGCCCCGTTT--..............................................................................................................................................................................2860.17101000000000
..........ACCGCTCCTGCTCGGTCGCCAGAGCCC.....................................................................................................................................................................................2760.17100100000000
.......TATACCGCTCCTGCTCGGTCGCCAG..........................................................................................................................................................................................2560.17101000000000
.......TATACCGCTCCTGCTCGGTCGCCAGAG........................................................................................................................................................................................2760.17101000000000
.......TATACCGCTCCTGCTCGGTCGCCA...........................................................................................................................................................................................2470.14101000000000
......TTATACCGCTCCTGCTCGGTCG..............................................................................................................................................................................................2280.13101000000000
droEug1
TGGGGGATATACCGCCCCTACTCGGTCGCCAGGGCCCCGTTT-CCAGAGTGCACCGCCGCGGCGGA-GGGGTTGGACTATGGTCGGGTCCATGACCTTGTGC---------------ACCGCTCCTACGATCTCGCCCGCCC----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGAAGCTATACCGCTCCTGCTCGGTCGCCAGAGCCCCAATT--TGCGGTGTGCCGCCTAGGCGGT-GGGGTTGCCTGTTAGTCCGCTCCTTGACCTTTTAAC--------------ACC---------------------TATTTTC-CCTTTGTGCAAACCG-----TGTCGGTGGTTCCGACCAGATTCCGAATCCTTTAGTCAAGGATTTGGAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGTATTTATACCGCTCCTGCTCGGTTCCCATTGCCCCATTT---TTGGTGTGCCGCCTTGGCGTT-GGGGTTGGCTGATAGTCCGTTCCGTGACCTTTAAC---------------ATC---------------------TATTTTC-CC-CAGTGCTCACCA-----TGACGTGGTTTTCGTCGGAGTTCCAGGTCCTCCTGCCAAGCTGTTGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TTGGTTCC------------------------------------------------------------------------------------------TCCCTCCCTTGTCACTCTT----------------TTCCCGCTCGTTTTT-CTTCT------------------------CTCCTCTCTGTATCTA-----------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
TGGGAGTTATACCGCTCCTGCTCGGTCGCCAGAGCCCCGTTT--AAGGGTGTACCGCA-GAGCGGC-GGTGTTGGCTGTTGGTCCGCTCCTTGACCTTTACC---------------ACC---------------------TATTTTA-TCCCCGTGCGGTCCGTATTTTGGGGTTT---TTTTCCCGAATCCGTTGCCTCCTGCCAAGGATTTGGGGSizeHit CountTotal NormTotal
No Reads
droAna3
TGGGGGATATACCGCCCCTGCTCGGTCACCAGAGCCCCGTTTTCCAGCGTGCACCGCCGCGGCGGG-GGGGTTGGAAATCGGTCCGATCCATGACCTTGTGC---------------ACTGTTCCT---------------------T-----------------ATCTTGAGGTTC-TGTTCC---------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................TCCAGCGTGCACCGCCGCGGCGGG-G......................................................................................................................................................25120.506303000
..........................................TCCAGCGTGCACCGCCGCGGCGG.........................................................................................................................................................23120.506240000
......................................GTTTTCCAGCGTGCACCGCCGCGGC...........................................................................................................................................................25140.365230000
.........................TCACCAGAGCCCCGTTTTCCAGCGTG.......................................................................................................................................................................26150.335203000
..........................CACCAGAGCCCCGTTTTCCAGCGTGC......................................................................................................................................................................26150.335131000
.........TACCGCCCCTGCTCGGTCACCAGAGC.......................................................................................................................................................................................26160.315320000
.....................................CGTTTTCCAGCGTGCACCGCCGCGGC...........................................................................................................................................................26130.314220000
..........................................TCCAGCGTGCACCGCCGCGGCGGG-GG.....................................................................................................................................................26120.253021000
.........TACCGCCCCTGCTCGGTCACCAGA.........................................................................................................................................................................................24170.183201000
..................................................................................TCCGATCCATGACCTTGTGC---------------ACTGT................................................................................................25120.172020000
.......................................TTTTCCAGCGTGCACCGCCGCGGCGGG-G......................................................................................................................................................28120.172020000
.........................................TTCCAGCGTGCACCGCCGCGGCGG.........................................................................................................................................................24120.172020000
......................................GTTTTCCAGCGTGCACCGCCGCGGCG..........................................................................................................................................................26130.152110000
....................................CCGTTTTCCAGCGTGCACCGCCGCGG............................................................................................................................................................26130.152110000
..........................................TCCAGCGTGCACCGCCGCGGC...........................................................................................................................................................21140.142020000
.............................................................................ATCGGTCCGATCCATGACCTTGTGC---------------AC...................................................................................................27140.142110000
.........................TCACCAGAGCCCCGTTTTCCAGC..........................................................................................................................................................................23150.132200000
........................GTCACCAGAGCCCCGTTTTCCAGCGT........................................................................................................................................................................26150.132020000
.........................TCACCAGAGCCCCGTTTTCCAGCGT........................................................................................................................................................................25150.132020000
.........................TCACCAGAGCCCCGTTTTCCAGCGTGC......................................................................................................................................................................27150.132020000
.........TACCGCCCCTGCTCGGTCACCAGAGCC......................................................................................................................................................................................27150.132200000
.........TACCGCCCCTGCTCGGTCACCAGAG........................................................................................................................................................................................25160.132200000
......................................................................GTTGGAAATCGGTCCGATCCATGACC..........................................................................................................................26160.132110000
.......TATACCGCCCCTGCTCGGTCACCAGAGC.......................................................................................................................................................................................28160.132110000
.......................................................................TTGGAAATCGGTCCGATCCATGACC..........................................................................................................................25160.132020000
........................................................................TGGAAATCGGTCCGATCCATGACCTTGT......................................................................................................................28160.132200000
.....................TCGGTCACCAGAGCCCCGTTTTCC.............................................................................................................................................................................24160.132020000
.......TATACCGCCCCTGCTCGGTCACCAGA.........................................................................................................................................................................................26170.122200000
....................................................................................CGATCCATGACCTTGTGC---------------ACTGTTCC.............................................................................................26100.101010000
..........................................................................................ATGACCTTGTGC---------------ACTGTTCCT---------------------T-----------------ATCC.................................................26100.101010000
.......................................................................................TCCATGACCTTGTGC---------------ACTGTTCC.............................................................................................23100.101010000
.....................................................................................GATCCATGACCTTGTGC---------------ACTGTTCCT---------------------T-----------------.....................................................27100.101100000
.....................................................................................GATCCATGACCTTGTGC---------------ACTGTTCCT---------------------.......................................................................26100.101100000
.........................................TTCCAGCGTGCACCGCCGCGGCGGG-G......................................................................................................................................................26120.081010000
..........................................TCCAGCGTGCACCGCCGCGGCGGG-.......................................................................................................................................................24120.081010000
.............................................AGCGTGCACCGCCGCGGCGGG-GG.....................................................................................................................................................23120.081100000
...........................................CCAGCGTGCACCGCCGCGGCGGG-G......................................................................................................................................................24120.081010000
.........................................TTCCAGCGTGCACCGCCGCGGCGGG-GG.....................................................................................................................................................27120.081010000
......................................GTTTTCCAGCGTGCACCGCCGCGGCGG.........................................................................................................................................................27120.081010000
.........................................TTCCAGCGTGCACCGCCGCGGCGGG-GGG....................................................................................................................................................28120.081100000
.....................................CGTTTTCCAGCGTGCACCGCCGCGGCG..........................................................................................................................................................27120.081100000
........................................TTTCCAGCGTGCACCGCCGCGGCGGG-GG.....................................................................................................................................................28120.081010000
..........................................TCCAGCGTGCACCGCCGCGGCGGG-GGGT...................................................................................................................................................28120.081100000
..............................................................................TCGGTCCGATCCATGACCTTGTGC---------------ACTG.................................................................................................28130.081010000
...........................................CCAGCGTGCACCGCCGCGGCGC.........................................................................................................................................................22130.081010000
...................................CCCGTTTTCCAGCGTGCACCGCCGCGGC...........................................................................................................................................................28130.081100000
....................................CCGTTTTCCAGCGTGCACCGCCGC..............................................................................................................................................................24130.081010000
.............................................................................ATCGGTCCGATCCATGACCTTGTGC---------------ACTG.................................................................................................29130.081100000
.....................................CGTTTTCCAGCGTGCACCGCCGC..............................................................................................................................................................23130.081010000
..........................CACCAGAGCCCCGTTTTCCAGCGTGCACC...................................................................................................................................................................29130.081100000
....................................CCGTTTTCCAGCGTGCACCGC.................................................................................................................................................................21130.081100000
.........................TCACCAGAGCCCCGTTTTCCAGCGTGCAC....................................................................................................................................................................29130.081010000
....................................CCGTTTTCCAGCGTGCACCGCCGCG.............................................................................................................................................................25130.081010000
..........................................TCCAGCGTGCACCGCCGCGGCG..........................................................................................................................................................22130.081100000
..................................................................................TCCGATCCATGACCTTGTGC---------------ACTG.................................................................................................24130.081100000
.........................................TTCCAGCGTGCACCGCCGCGGCG..........................................................................................................................................................23130.081100000
.....................................CGTTTTCCAGCGTGCACCGCCGCGG............................................................................................................................................................25130.081100000
.......................................TTTTCCAGCGTGCACCGCCGCGG............................................................................................................................................................23140.071100000
..................................................................................TCCGATCCATGACCTTGTGC---------------AC...................................................................................................22140.071010000
..............................................................................TCGGTCCGATCCATGACCTTGTGC---------------AC...................................................................................................26140.071010000
...............................GAGCCCCGTTTTCCAGCGTGCAC....................................................................................................................................................................23140.071010000
..........ACCGCCCCTGCTCGGTCACCAGAGCCCC....................................................................................................................................................................................28150.071100000
...............CCCTGCTCGGTCACCAGAGCCCCGTT.................................................................................................................................................................................26150.071010000
.....................TCGGTCACCAGAGCCCCGTTTTCCAGCG.........................................................................................................................................................................28150.071010000
.........................TCACCAGAGCCCCGTTTTCCAGCG.........................................................................................................................................................................24150.071010000
..................TGCTCGGTCACCAGAGCCCCGTTT................................................................................................................................................................................24150.071000010
...........................ACCAGAGCCCCGTTTTCCAGCGTGC......................................................................................................................................................................25150.071001000
........................GTCACCAGAGCCCCGTTTTCCAGCGTGC......................................................................................................................................................................28150.071010000
.........TACCGCCCCTGCTCGGTCACCAGAGCCCC....................................................................................................................................................................................29150.071100000
.........TACCGCCCCTGCTCGGTCACCAGAGCCC.....................................................................................................................................................................................28150.071010000
..................TGCTCGGTCACCAGAGCCCCGTTTTC..............................................................................................................................................................................26150.071100000
.......TATACCGCCCCTGCTCGGTCACCAGAG........................................................................................................................................................................................27160.061100000
.............................CAGAGCCCCGTTTTCCAGCGTGC......................................................................................................................................................................23160.061100000
.....................TCGGTCACCAGAGCCCCGTTTTCCAG...........................................................................................................................................................................26160.061010000
....................CTCGGTCACCAGAGCCCCGTTTTCCA............................................................................................................................................................................26160.061100000
.......................................................................TTGGAAATCGGTCCGATCCATGACCT.........................................................................................................................26160.061010000
....................CTCGGTCACCAGAGCCCCGTTTTC..............................................................................................................................................................................24160.061010000
.........TACCGCCCCTGCTCGGTCACCAGAGT.......................................................................................................................................................................................26160.061100000
...............CCCTGCTCGGTCACCAGAGCCCCGT..................................................................................................................................................................................25160.061010000
.......................GGTCACCAGAGCCCCGTTTTCC.............................................................................................................................................................................22160.061100000
...........CCGCCCCTGCTCGGTCACCAGAGC.......................................................................................................................................................................................24160.061100000
........................................................................TGGAAATCGGTCCGATCCATGACC..........................................................................................................................24160.061010000
.........TACCGCCCCTGCTCGGTCACCAG..........................................................................................................................................................................................23170.061100000
.......TATACCGCCCCTGCTCGGTCACCAG..........................................................................................................................................................................................25170.061100000
.......TATACCGCCCCTGCTCGGTCACCA...........................................................................................................................................................................................24180.061100000
.GGGGGATATACCGCCCCTGCTCGGTCAC.............................................................................................................................................................................................28180.061100000
.........TACCGCCCCTGCTCGGTCACCA...........................................................................................................................................................................................22180.061100000
.........TACCGCCCCTGCTCGGTCAC.............................................................................................................................................................................................20190.051100000
droBip1
TGGGGGATATACCGCCCCTACTCGGTCGCCAGAGCCCCGTTA-CCATGGTGCACCGCCGCGGCGGA-GGGGTTGGACAATGGTCGGATCCATGACCTTGTGC---------------ACTGCTCCTAGGATTCCGCCCGCTC----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droVir3
TGGGAGTTTAACCGCTCCAGCTCGGTCGCCAGCGCCCCTTT----TTAGTACACCGCT-ATGCGGCAGGAGTTGAC--TTGGTCGGATCCGTGGCCTTCTGT---------------ACAATTTCT---------------------TGCCTC-----------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................TT----TTAGTACACCGCT-ATGCGGCAGGAGT..................................................................................................................................................28201.00200000000000000000000000000150100000040000000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCGGCAGGAG...................................................................................................................................................27200.408000000000000000000000000000000000070100000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCGGCAGGA....................................................................................................................................................26200.306000000000000000000000000040000000020000000000000000000000000000
........................................T----TTAGTACACCGCT-ATGCGGCAGGAGT..................................................................................................................................................27200.306000000000000000000000000030000000020100000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGG............................................................................................................................20180.285000000101000000000000000000300000000000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCTTC.......................................................................................................................25170.244000000000000000000000000020100000000100000000000000000000000000
................................................................................................TTCTGT---------------ACAATTTCT---------------------TGCCTC-----------------------------------------------------------------21200.204000000000000000000000000010100000011000000000000000000000000000
........................................T----TTAGTACACCGCT-ATGCGGCAGGAG...................................................................................................................................................26200.204000000000000000000000000000300000000001000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCTTCT......................................................................................................................26170.183000000000000000000000000000100000000200000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCC..........................................................................................................................22170.183000000000020000000000000000000000000100000000000000000000000000
.........................................................................GAC--TTGGTCGGATCCGTGGCCTTCTGT---------------.....................................................................................................27170.183000000000000000000000000000000000000003000000000000000000000000
...............TCCAGCTCGGTCGCCAGCGCCCCTTT----.............................................................................................................................................................................26200.153000000000000000000000000000000000000300000000000000000000000000
.......................................................................................TCCGTGGCCTTCTGT---------------ACAATTTCT---------------------.......................................................................24150.132001000000000000000000000001000000000000000000000000000000000000
.........................................................................GAC--TTGGTCGGATCCGTGGCCTT........................................................................................................................23170.122000010000000000000000000000100000000000000000000000000000000000
.........................................................T-ATGCGGCAGGAGTTGAC--TTGGTCGG....................................................................................................................................26200.102000000000000000000000000000000000000200000000000000000000000000
.........................................................T-ATGCGGCAGGAGTTGAC--TTGGTCGGA...................................................................................................................................27200.102000000000000000000000000000000000000200000000000000000000000000
..............................................TAGTACACCGCT-ATGCGGCAGGAGT..................................................................................................................................................25200.102000000000000000000000000020000000000000000000000000000000000000
.........................TCGCCAGCGCCCCTTT----TTAGTACACCGC.................................................................................................................................................................28200.102000000000000000000000000010000000001000000000000000000000000000
.....................................................................................GATCCGTGGCCTTCTGT---------------ACAATTTCT---------------------.......................................................................26150.071000000000000000000000000001000000000000000000000000000000000000
.........................................................................................CGTGGCCTTCTGT---------------ACAATTTCT---------------------TGCC...................................................................26150.071000000000000000000000000000000000000100000000000000000000000000
.......................................................................................TCCGTGGCCTTCTGT---------------ACAATTTCT---------------------T......................................................................25150.071000000000000000000000000000000000000000000000000000000000100000
......................................................................................ATCCGTGGCCTTCTGT---------------ACAATTTCT---------------------.......................................................................25150.071000000000000000000000000000000000010000000000000000000000000000
...................................................................................CGGATCCGTGGCCTTCTGT---------------ACAATT...............................................................................................25150.071100000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGAC--TTGGTCGGATCCGTGGCCTTC.......................................................................................................................26170.061000000000000000000000000000000000000100000000000000000000000000
.........................................................................GAC--TTGGTCGGATCCGTGGCCTTCT......................................................................................................................25170.061000010000000000000000000000000000000000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCT.........................................................................................................................23170.061000000000000000000000000000000000000100000000000000000000000000
...........................................................................C--TTGGTCGGATCCGTGGCC..........................................................................................................................19170.061000000000000000000000000000000000000001000000000000000000000000
...........................................................................C--TTGGTCGGATCCGTGGCCTTC.......................................................................................................................22170.061000000000000000000000000000000000000000100000000000000000000000
.........................................................................GAC--TTGGTCGGATCCGTGGCCTTC.......................................................................................................................24170.061000010000000000000000000000000000000000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCTTT.......................................................................................................................25170.061000000001000000000000000000000000000000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCTT........................................................................................................................24170.061000000000000000000000000000100000000000000000000000000000000000
.......................................................................TTGAC--TTGGTCGGATCCGTGGCC..........................................................................................................................23170.061000000000000000000000000000100000000000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGTGGCCTTCTGT---------------.....................................................................................................28170.061000000000000000000000000000000000000100000000000000000000000000
.......................................................................TTGAC--TTGGTCGGATCCGTGG............................................................................................................................21180.061000000000000000000000000000000000000001000000000000000000000000
.........................................................................GAC--TTGGTCGGATCCGTGGC...........................................................................................................................20180.061000000000000010000000000000000000000000000000000000000000000000
.......................................................................TTGAC--TTGGTCGGATCCGTGGC...........................................................................................................................22180.061000010000000000000000000000000000000000000000000000000000000000
......................................................................GTTGAC--TTGGTCGGATCCGTGGC...........................................................................................................................23180.061000000000000000000000000000000000000100000000000000000000000000
...................GCTCGGTCGCCAGCGCCCCTTT----TTAG.........................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
...............TCCAGCTCGGTCGCCAGCGCCCCT...................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
........................................T----TTAGTACACCGCT-ATGCGGCAGGA....................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCGGCAGG.....................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
...............TCCAGCTCGGTCGCCAGCGCC......................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................TGAC--TTGGTCGGATCCGT..............................................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
..................................CCCCTTT----TTAGTACACCGCT-ATGCG..........................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................GGAGTTGAC--TTGGTCGGATCC................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCGGCAGGAGTT.................................................................................................................................................29200.051000000000000000000000000010000000000000000000000000000000000000
........................................T----TTAGTACACCGCT-ATGCGGCAGGAGTT.................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
.................................................TACACCGCT-ATGCGGCAGGAGTTGAC--............................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
...............TCCAGCTCGGTCGCCAGCGCCCCTT..................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
........................................T----TTAGTACACCGCT-ATGCGGCAGGAA...................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................GGCAGGAGTTGAC--TTGGTCGGATCCG...............................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
.....................TCGGTCGCCAGCGCCCCTTT----TTAGTACA.....................................................................................................................................................................28200.051000000000000000000000000000000000000100000000000000000000000000
......................................TTT----TTAGTACACCGCT-ATGCGGCAGGAG...................................................................................................................................................28200.051000000000000000000000000000000000010000000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCGGCA.......................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.........................TCGCCAGCGCCCCTTT----TTAGTACACCG..................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................TTCTGT---------------ACAATTTCT---------------------TGC....................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
..............CTCCAGCTCGGTCGCCAGCGCC......................................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
.....................TCGGTCGCCAGCGCCCCTTT----TTAGT........................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
.......................................TT----TTAGTACACCGCT-ATGCG..........................................................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
.........................................................T-ATGCGGCAGGAGTTGAC--TTGGTCG.....................................................................................................................................25200.051000000000000010000000000000000000000000000000000000000000000000
.................................................................CAGGAGTTGAC--TTGGTCGGATCCGT..............................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
................................................................GCAGGAGTTGAC--TTGGTCGGA...................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................ATGCGGCAGGAGTTGAC--TTGG........................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................T-ATGCGGCAGGAGTTGAC--TTG.........................................................................................................................................21200.051000000000010000000000000000000000000000000000000000000000000000
.....................TCGGTCGCCAGCGCCCCTTT----TTAGTAC......................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
.....................TCGGTCGCCAGCGCCCCTTT----TTAG.........................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000

Generated: 05/15/2015 at 03:19 PM