ID:

dsi_21488

 Coordinate:

3l:11396657-11396806 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_11396653_11396656_-]; CDS [3l_11395888_11396652_-]; exon [3l_11395888_11396656_-]; intron [3l_11396657_11397922_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTTCTAATAATCAAAACAAACTTGACCTTAACGTGTCTAGTTCATATATGAATGGAATAATATAGTATTTTATTTTTTAACAACTACATTAATACTTATGAAAGATTAAGTAGGCGAAAAAAGAAAGCATTTTAATCAAAGCCGATTAGGTTTGAATAATACGATTACAAATATTCCCATTACTCTATGCTCTTGCAGCACCATGTTGGACGTGATCCAACCCAGCAGCAACCTCCCGACCAGCGAGA
**************************************************.....((((((...((((...((((((........((((.(((((.(((....))))))))))))((...........))..........(((((.....)))))))))))....))))....))))))..........(((....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
................AACGAACTAGACCTTAAC........................................................................................................................................................................................................................ 18 2 5 1.00 5 2 0 3 0 0 0 0
..................................................................................................................................................................................................................GACGTGATCCAACCCA........................ 16 0 1 1.00 1 0 1 0 0 0 0 0
..............ATAACGAACTTGACCTTAACCT...................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
................AACGAACTAGACCTTAACCT...................................................................................................................................................................................................................... 20 3 8 0.50 4 2 0 2 0 0 0 0
..............ATAACGAACGTGACCTTAAC........................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................ATTAATTAGGGGAAAAAAGA............................................................................................................................ 20 2 4 0.25 1 0 1 0 0 0 0 0
..............................................................................................................AATAGGCGAAAAAAGAAACC........................................................................................................................ 20 2 6 0.17 1 0 0 1 0 0 0 0
.....................................................................................................................................TAAAACTAAGCCGATTAGGT................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0
..............ATAACGAACTAGACCTTAAC........................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0 0 0
...............TAACGAACTAGACCTTAAC........................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 2 0 0 0 0
.............................................................................................................AAGTAGGCGGAAAAAGAAG.......................................................................................................................... 19 2 14 0.07 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TTGGACGTGCTCCAAAC.......................... 17 2 14 0.07 1 0 0 0 0 1 0 0
............................................................................................................................................................................................ATCCTCTTGCGGCACCA............................................. 17 2 20 0.05 1 0 0 0 0 0 0 1
............................................................................................................................................AAGCCGATGAAGTTTGA............................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

TTAAAGATTATTAGTTTTGTTTGAACTGGAATTGCACAGATCAAGTATATACTTACCTTATTATATCATAAAATAAAAAATTGTTGATGTAATTATGAATACTTTCTAATTCATCCGCTTTTTTCTTTCGTAAAATTAGTTTCGGCTAATCCAAACTTATTATGCTAATGTTTATAAGGGTAATGAGATACGAGAACGTCGTGGTACAACCTGCACTAGGTTGGGTCGTCGTTGGAGGGCTGGTCGCTCT
**************************************************.....((((((...((((...((((((........((((.(((((.(((....))))))))))))((...........))..........(((((.....)))))))))))....))))....))))))..........(((....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................TTTTGGAGGGCTGGTCGCT.. 19 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................AGTTTCTGATTCATCCGTTTT................................................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0
...................................................................ATATAAAAAAAAATTGTTGTTGT................................................................................................................................................................ 23 3 10 0.10 1 0 0 0 1 0 0
......................................................................................................................................................................................................................ACGAGGTTGGGTCGT..................... 15 1 14 0.07 1 0 0 1 0 0 0
.......................................................................AAAAAAAAGTTGTTGTTGTAAT............................................................................................................................................................. 22 3 16 0.06 1 0 0 0 0 1 0
.........................................................................AAAAAAATTGTTGATTTAA.............................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 1
..........................................................................AAAAAATTGTCGATGTGAGT............................................................................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 05:28 AM