ID:

dsi_21487

 Coordinate:

3l:7980443-7980592 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.7 -22.6 -22.5

Flybase annnotation

CDS [3l_7979229_7980442_-]; exon [3l_7978937_7980442_-]; intron [3l_7980443_7980922_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATGTAACGTATAGTATCAACCTTGTTGATTCCATTGATCGATGCTTGATTGAAAACCCAAAATTGAGAACATTTGCTGTCATGGGAAACTAGCCCACTGTCGTGTTGCCTTAAGCCTTTTTTGGGGCAGATTAGTCATTCCAGTTTAAACTAATCGAAAAATATTATACTACTATCCAATGCATCGTCGTTTCTTTCAGGCAAACAAGCCTTGCTACAAGCCGTTTCCGATGCTATGGCCAGCACCCGT
**************************************************...............(((((....((.((.(((.(((...(((..(((....))).(((((((((.....)))))))))(((((((.............))))))).............)))...))).))))).))....)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................TCCAGTGCATCGTCGTTTTTTTAA................................................... 24 3 2 3.50 7 3 3 0 0 0 0 1 0 0
......................................................................................................................................................................ATACTACTATCCAATGCATCGT.............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TATCCAATGCATCGTCGTTTC........................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................AGCCTTGCTACAAGCCGTTGCCGA................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................TCCAGTGCATCGTCGTTTTTTTC.................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................TCCAGTGCATCGTCGTTTCT....................................................... 20 1 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................TCGCCGGTTCTTTCAGGCAGA............................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAAGCCCTCTCTGATGCTAT............. 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0
.......................TGTTGATTCCTTAGATC.................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................AAAATTGAGTATATGTGCTG........................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATACATTGCATATCATAGTTGGAACAACTAAGGTAACTAGCTACGAACTAACTTTTGGGTTTTAACTCTTGTAAACGACAGTACCCTTTGATCGGGTGACAGCACAACGGAATTCGGAAAAAACCCCGTCTAATCAGTAAGGTCAAATTTGATTAGCTTTTTATAATATGATGATAGGTTACGTAGCAGCAAAGAAAGTCCGTTTGTTCGGAACGATGTTCGGCAAAGGCTACGATACCGGTCGTGGGCA
**************************************************...............(((((....((.((.(((.(((...(((..(((....))).(((((((((.....)))))))))(((((((.............))))))).............)))...))).))))).))....)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
.........................................................................................................................................................................................................................GTTCGGCAAAGGCTACGAT.............. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TCAGAACGATGCTCGGAAAA....................... 20 3 4 1.00 4 0 3 0 0 0 0 1 0 0
.................................................................................................................................................................................................................GGAACGATGTTCGGCAAAGGC.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................CAGTAAGGTCAAAGTCGATGA............................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
..........................................................................................ATCGGGTGACTGCGCAAC.............................................................................................................................................. 18 2 6 0.33 2 2 0 0 0 0 0 0 0 0
............TCAAAGTTGGAACAACT............................................................................................................................................................................................................................. 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TTTTTATAAGATGATGTTTGGT....................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0
..........................................................................................ATCGGGTGACTGCGCAACG............................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................GATCGGGTGACTGCGCAAC.............................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................GGGTGACTGCGCAACGCAAT......................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.........................................................................................AATCGGGTGACTGCGCAACG............................................................................................................................................. 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0
............TCAAAGTTGGAACAAC.............................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TTTTGCTCGGAATGATGTTC............................. 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0
..............AAAGTTGGAACAACT............................................................................................................................................................................................................................. 15 1 11 0.18 2 0 0 0 1 1 0 0 0 0
...................................................................................................................................................................................................................................GGCTGCGATACCGGT........ 15 1 11 0.18 2 0 0 0 0 0 0 0 2 0
........................................................................................AGATCGGGTGACTGCGCAAC.............................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................TCAAGTATGATTAGCTTT.......................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1
........................................................................................TAGTCGGGTGACTGCACAA............................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................ATCGGGTGACTGCGCA................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................TACTCGGTAAGGTCAAA....................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................AGTACCCTTTGATGGTTTG........................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................CATGGATCGGGTGACTGC................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AGGTTACCTAGTAGCAAT......................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:35 AM