ID:

dsi_21481

 Coordinate:

3l:15744031-15744194 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.1 -6.1 -5.6

Flybase annnotation

five_prime_UTR [3l_15743814_15744297_+]; exon [3l_15743814_15745022_+]

No Repeatable elements found

Sense Strand Reads

########################################################################################################################################################################################################################################################################
AGGATCGCGATCAACGGGAAGCCAGTGCGATCGCGGCAGTGTGTGTGCGTGTGCGGGAGTGTAACAAATACGAAAAACGAAAAGTCGCTGCGAAGGTAGATCTCATTATTATTGTATTGTTGTCATGTTTTTGCTTTGCCCCGATCTTCATTTGCGATCTTTTGAGTTTGGCTTTCGTATTATCTGTAGATATATAAATTGCTTAAGTACTTAGATCTTACAAAAGAAAACCACATCATACACAAACACACGCACACACTCAGC
**************************************************************************************************************.......((((..((.((...(((...(((....((.................))....)))....)))..)).))..))))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
..........................................................................................................................................................................TCTTTGGTATTAGCTGTAGA.......................................................................... 20 3 9 4.67 42 11 6 13 0 5 4 3 0 0
.......................................................................................................................................................................TTGGCTTTCGTATTATCTGTAGATATA...................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................ATTGTATTGTTGTCA........................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTATCTGTAGATATATCAATTGCT............................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TCTTTGGTATTAGCTGTAGATA........................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TTTCGTATTATCTGTAGATATA...................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................AGGTAGATCTCATTATTATTGTA.................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTACTTAGATCTTACA.......................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................AACGAAAAGTCGCTGCGAAGGTAGATCTCA............................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TGGCTTTCGTATTATCTGTAGATATA...................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTCCGTACTATCTGTAGATTTATA.................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................GTAGATCTCATTATTATTGTATT.................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................TGCGAAGGTAGATCTCATTATT.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....CGGGATCAACCGGAAGCCGG............................................................................................................................................................................................................................................... 20 3 8 0.38 3 0 0 1 0 0 2 0 0 0
.............................................................................................................TAGTGTACTGTTGTCTTGTTTT..................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0
........................................................................................GGCGAAGGTAGATCT................................................................................................................................................................. 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0
.......CGATCAACTGGGTGCCAGTGC............................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0
.................................................TGTGGGGGACTGTAACACAT................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGCGATCTATTGAG.................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTGGTATTAGCTGTAGA.......................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................GTAAATAAATAAATTGCTAAAGT........................................................ 23 3 8 0.13 1 0 0 0 0 0 0 0 0 1
..........................................................................AAGCGCAAAGTCGCGGCGA........................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0

Anti-sense strand reads

TCCTAGCGCTAGTTGCCCTTCGGTCACGCTAGCGCCGTCACACACACGCACACGCCCTCACATTGTTTATGCTTTTTGCTTTTCAGCGACGCTTCCATCTAGAGTAATAATAACATAACAACAGTACAAAAACGAAACGGGGCTAGAAGTAAACGCTAGAAAACTCAAACCGAAAGCATAATAGACATCTATATATTTAACGAATTCATGAATCTAGAATGTTTTCTTTTGGTGTAGTATGTGTTTGTGTGCGTGTGTGAGTCG
**********************************************************************.......((((..((.((...(((...(((....((.................))....)))....)))..)).))..))))..************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...............CCCTTCGGTCACGCTAGCGC..................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......CGCTAGGTGCCCTTC................................................................................................................................................................................................................................................... 15 1 9 0.44 4 0 2 0 1 1 0
.....CCGCTAGGTGCCCTTC................................................................................................................................................................................................................................................... 16 2 20 0.35 7 0 6 0 0 1 0
..................TTCGGTCACGCTAGCGAA.................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0
............................................................AATTGTTGATGCTTTTTGGTT....................................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................TTAATTTTGGTGTAGTAGGTG..................... 21 3 12 0.08 1 0 0 0 1 0 0
.............................................................................................................................................................................................................TCATGAATCTAGAAG............................................ 15 1 12 0.08 1 0 0 0 0 0 1
................................................................................................................................................................................................................................................GTGTTTGTGTGCGTGTGT...... 18 0 18 0.06 1 0 0 1 0 0 0
........................CAGTCTAGCGCCGTCA................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 08:14 PM