dsi_21473

exon [2l_6140483_6141131_+]; CDS [2l_6140483_6141131_+]; exon [2l_6139796_6140397_+]; CDS [2l_6139796_6140397_+]; intron [2l_6140398_6140482_+]

##################################################-------------------------------------------------------------------------------------################################################## CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAGGAAATTATTCATAAGACTTATTATTGCTGTACCAGTAACGGGAACTCCCAAGAACATATACTAATGAATGTTGCATTGCAGGAAAGGAGAAATACCAGAGCTGGATTCAGGACGCCTGTCGCAACATTGTC ************************************************..............................((((....((((((((....)))....................)))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	GSM343915 embryo	M023 head	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
................................................................................................................................................AATACCAGAGCTGGATTCAGGACGCCT..............	27	0	1	4.00	4	2	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................CAGAGCTGGATTCAGGAC..................	18	0	1	3.00	3	2	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................CGCCTGTCGCAACATTGTC	19	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GAAAGGAGAAATACCAGAGCTG............................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.................................CTCCATCAGTCCCGAAGGAAAG..................................................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GCTGGATTCAGGACGCCT..............	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TACCAGAGCTGGATTCAGGAC..................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATACCAGAGCTGGATTCAGGAC..................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAGCTGGATTCAGGACGCC...............	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGCTGGATTCAGGACGCCT..............	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................AATACCAGAGCTGGATTCAGGACGCC...............	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........GAAGGAGTTGCTGCGCAGCATGGC........................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................AGCTGGATTCAGGACGCCTG.............	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACGCCTGTCGCAACATTGTC	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................GCTGGATTCAGGACGCCTGTCGCG........	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................CCTCCATCAGTCCCGAAGG......................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................AAATACCAGAGCTGGATTCAGGA...................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................TACCAGAGCTGGATTCAGGACGCC...............	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................TGCGCAGCATGGCCTCCATCAGTCC............................................................................................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................AGGAAAGGAGAAATACCAGAGCT.............................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAGGACGCCTGTCGCAACA.....	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..AGAAGGAGAAGGAGTTGCTGCGCAGCAT...........................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................ACCAGAGCTGGATTCAGGACGC................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ACCAGAGCTGGATTCAGGACGAC...............	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................AAATACCAGAGCTGGATTCAG.....................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................AGGAGAAATACCAGAGCTG............................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAGCTGGATTCAGGACGCCT..............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TACCAGAGCTGGATTCAGGACGCCT..............	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AAATACCAGAGCTGGATTCAGGACGCC...............	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AGTTGCTGCGCAGCATGGCCT......................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................ATGGCCTCCATCAGGACAGA.........................................................................................................................................	20	3	8	0.88	7	0	0	0	7	0	0	0	0	0	0
...................................................................................................................................................ACGCGAGCTGGGTTCAGGACG.................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ACGCGAGCTGGGTTCAGGAC..................	20	3	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................ATGAATGCTGCTTTGGAGGAA...............................................	21	3	5	0.40	2	0	0	0	1	0	0	0	0	1	0
..................................................................................................................................................TACCCGAGCTGGGTTCAGAAC..................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TACGCGAGCTGGGTTCAGGAC..................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............GGAGTTGCTGCGCGGCA............................................................................................................................................................	17	1	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.................................................GGTTGGAAATTATTCGTA......................................................................................................................	18	2	7	0.14	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................ACCCGAGCTGGGTTCAGAAC..................	20	3	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGGAGATATACCGGAG...............................	17	2	10	0.10	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................GAGCTGGCTTCAGAAC..................	16	2	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................AGGAGAAATACGAGA................................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................GTGAAATACCGGAGCT.............................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

GCTCTTCCTCTTCCTCAACGACGCGTCGTACCGGAGGTAGTCAGGGCTTCCATCCTTTAATAAGTATTCTGAATAATAACGACATGGTCATTGCCCTTGAGGGTTCTTGTATATGATTACTTACAACGTAACGTCCTTTCCTCTTTATGGTCTCGACCTAAGTCCTGCGGACAGCGTTGTAACAG ************************************************..............................((((....((((((((....)))....................)))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
.........................TCGTCCCGGAGGTAGTCAGGG...........................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0
...................................................................................................AGGGTTCTTGTATAT.......................................................................	15	0	3	0.33	1	0	1	0	0	0
.................................................................................................................................................TATGGTCTCGACACAAGT......................	18	2	5	0.20	1	0	0	1	0	0
.................................................................ATTCTGAATGATAAC.........................................................................................................	15	1	6	0.17	1	0	1	0	0	0
....................GCGCGTCGTACCGGTGGTAT.................................................................................................................................................	20	3	13	0.08	1	0	0	0	1	0
............................................................TAAGTATTCTGGATAA.............................................................................................................	16	1	18	0.06	1	0	0	0	0	1
........................GTCGTACCTGAGGTA..................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0
.......................................................................................................TTCTTGTCTATGATT...................................................................	15	1	20	0.05	1	0	0	0	0	1
....................................................................................TGGTCATTGCCCTATA.....................................................................................	16	2	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2l:6140348-6140532 +	dsi_21473	CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAGGAAATTA-TTCATAAGACTTATTATTGCTGTACCAGT--------------AACGGGAACTCCCAAGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATTCAGGACGCCTG-TCGCAACATTGTC
droSec2	scaffold_5:4415668-4415852 +		CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAAGAAATTA-TTCATAAGACTTATTATTGCTGTACCAGT--------------AATAGGAACTTCCAAGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATCCAAGACGCCTG-TCGCAACATTGTC
dm3	chr2L:6344896-6345080 +		CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAAGAAATTA-TTCACAAGACTTATTACTGCTGTACCAGT--------------AACAGGAACTCCCACGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATCCAAGACGCCTG-TCGCAACATCGTC
droEre2	scaffold_4929:15273374-15273572 +		CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTACGAATTTA-TTCATAAGGAGTATTGTTGCTTGTACTGTACTGCATTTAACTTAATATGAACTCCCAAGAACATATTC-------TAATGTATGTTGTG-----TT------GCAGGAAAGGAGAAGTACCAGAGCTGGATTCAAGACGCATG-TCGCAACATTGTC
droYak3	2L:6559791-6559944 -		CGAGAAGGAAAAGGAGTTGCTGCGCAGCATGGCATCCATCAGTCCCGAAGGTAAGAAT-TA-TTAATCC--------------GGGA------------------------------CAAAAGAATATAC-------TGATGTATATTGTA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATTCAAGACGCATG-TCGCAACATTGTC
droEug1	scf7180000409676:173290-173381 -		TGACAATGAAAAGGAGTTGCTGCGCAATATGGCCTCCATCAGCCCAGAAGGTAAGACATTT-TTCAAAAGAACAATTGGAGCTGAATCTT----------------------------------------------------------------------------------------------------------TAA--------------------
droBia1	scf7180000299850:17523-17676 -		CGAAAAGGAGAAGGAGCTGCTGCGCAACATGGCCTCCATCACTCAGGAAGGTAAAATATTTATTTT------TTATTGGAGCTGGAACGAT------------------------------ATTATATGT-------TAAGAT--ATTGTATACGTTT------GTAG---GGGAGAGGTCTAAAAGTTGGG------AC--AGT-TAGCAACAT--TC
droTak1	scf7180000415015:22290-22356 +		CGACAAGGAGAAGGAGCTTCTGCGCAACATGGCCTCCATCAGTCCGGAAGGTAATATATAA-TACATA-------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000489694:3001-3119 -		CGAGAAGGAAAAGGAGCTACTGCGCAGCATGGCCTCCATCAGTGCGGAAGGTAAGAAATCT-TGCATATAATGTAACTTA---------------------------------------------------------------------------------------------------TCGGTGAACCAGTTGCAAAATGTCCAGATCAAACAAGAAC
droRho1	scf7180000766215:13826-13915 -		CGAGAAGGAAAAGGATCTACTGCGCACCATGGCCTCCACCAGTCCGGAAGGTAAGTAGACG-TGTATTAAATGCATTTGAGCTAGATCAGT--------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453928:179711-179799 -		CGACAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAAGGTGAGAAACCA-CTTA--AAATTTACTTCAGCTAAGTCGG-------------------------------------------------------------------------------------------------------------------------------TA
droKik1	scf7180000302684:1573188-1573342 -		TGAGAAGGAGAAGGAGTTGTTGCGCAGCATGGCATCTATCAGTCCGGAAGGTGGGTAGCTAAAGCTCTA-----------------ATTAA--------------AATTAGGTAACTA------------------------AATGTTGTAAAT--TT------TCAGGCAAGGAGAAATACCAGAGCTGGATCCAGGACGCTTG-CCGCAACATCGTC
droAna3	scaffold_12916:7891665-7891835 -		CGAGAAGGAGAAGGAATTGCTGCGCAGCATGGCTTCCATTAGTCCAGAAGGTAGGAGAGTAATGTGT------GCTTGGA-------ATGT--------------------------------TTTATATTCTTACCTAAAAT--CTTTATTATTTTTAAACAAAAAGGTAAGGAAAAGTACCAGAGCTGGATCCAGGATGCCTG-CCGCAACATTGTC
droBip1	scf7180000396554:503329-503428 -		CGAGAAGGAGAAGGAATTGCTGCGCAGCATGGCTTCCATCAGTCCAGAGGGTAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATTCAGGACGCCTG-CCGCAACATTGTC
dp5	4_group5:2074764-2074863 -		TGAGAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCCAGGATGCCTG-TCGCAATGTGGTG
droPer2	scaffold_5:6456224-6456323 -		TGAGAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCCAGGATGCCTG-TCGCAATGTGGTC
droWil2	scf2_1100000004521:7177475-7177628 -		TGAAAAGGAGAAGGAACTGCTGAGAAGCATGGCTTCCATTGCCCCAGAAGGTGAGTGAATTGTACAGAA-----------------ATAAA--------------AATAGAGAATTCTAACAAAATA----------------------CC-----TT------TTAGGCAAGGAGAAATATCAAAAATGGATTCAGGATGCCTG-CCGGAATGTGGTT
droVir3	scaffold_12963:2790512-2790611 -		CGAGTCCGAAAAGCAAATGCTGCGCAGCATGGCCTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTACCAGAGCTGGATACAGGATGCCTG-TCGCAATGTGGTG
droMoj3	scaffold_6500:13048100-13048199 -		TGAGGCCGACAAGGAGCTGCTGCGCAGCATGGCCTCGCTGGCACCGGAAGGCAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTATCAGAGTTGGATTCAGGATGCCTG-CCGCAATGTGGTG
droGri2	scaffold_15252:2412751-2412850 -		TGAGGCGGATAAGCAGCTGCTGCGCAGCATGGCTTCGCTGACGCCGGAGGGTAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTATCAGAGCTGGATACAGGATGCGTG-TCGCAATGTCGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAGGAAATTA-TTCATAAGACTTATTATTGCTGTACCAGT--------------AACGGGAACTCCCAAGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATTCAGGACGCCTG-TCGCAACATTGTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................AATACCAGAGCTGGATTCAGGACGCCT...............	27	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAGAGCTGGATTCAGGAC...................	18	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CGCCTG-TCGCAACATTGTC	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GAAAGGAGAAATACCAGAGCTG.............................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATTCAGGACGCCT...............	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TACCAGAGCTGGATTCAGGAC...................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATACCAGAGCTGGATTCAGGAC...................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GAGCTGGATTCAGGACGCC................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCTGGATTCAGGACGCCT...............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AATACCAGAGCTGGATTCAGGACGCC................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........GAAGGAGTTGCTGCGCAGCATGGC..........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................AGCTGGATTCAGGACGCCTG-.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACGCCTG-TCGCAACATTGTC	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATTCAGGACGCCTG-TCGCG........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CCTCCATCAGTCCCGAAGG........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAATACCAGAGCTGGATTCAGGA....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TACCAGAGCTGGATTCAGGACGCC................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGCGCAGCATGGCCTCCATCAGTCC..............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGGAAAGGAGAAATACCAGAGCT..............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAGGACGCCTG-TCGCAACA.....	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..AGAAGGAGAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCAGAGCTGGATTCAGGACGC.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAATACCAGAGCTGGATTCAG......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGGAGAAATACCAGAGCTG.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GAGCTGGATTCAGGACGCCT...............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TACCAGAGCTGGATTCAGGACGCCT...............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAATACCAGAGCTGGATTCAGGACGCC................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGTTGCTGCGCAGCATGGCCT........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAAGAAATTA-TTCATAAGACTTATTATTGCTGTACCAGT--------------AATAGGAACTTCCAAGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATCCAAGACGCCTG-TCGCAACATTGTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................AATACCAGAGCTGGATCCAAG.....................	21	1	3.00	3	0	2	1	0
...........AGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
........................................................................................................................................................................................GAGCTGGATCCAAGACGCCTG-TCGC.........	25	1	2.00	2	0	1	1	0
.GAGAAGGAGAAGGAGTTGCTGC....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......GAGAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................TGCGCAGCATGGCCTCCATCAGTCCC.............................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................AGCTGGATCCAAGACGCCTG-TC...........	22	1	1.00	1	0	0	1	0
..........AAGGAGTTGCTGCGCAGCATG............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................................................................................................................................................................................AATACCAGAGCTGGATCCAA......................	20	1	1.00	1	1	0	0	0
........................................................................................................................................................................GAAAGGAGAAATACCAGAGCTG.............................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................CGCCTG-TCGCAACATTGTC	19	1	1.00	1	0	1	0	0
...GAAGGAGAAGGAGTTGCTG.....................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................CTGGATCCAAGACGCCTG-TCGC.........	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................AAATACCAGAGCTGGATCCAAGACGCCT...............	28	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................AGCTGGATCCAAGACGCCTG-T............	21	1	1.00	1	0	1	0	0
...................................................................................................................TCCAAGAACATATAC-------TAATGAAT..........................................................................	23	1	1.00	1	0	0	0	1
.............................................................................................................................................................................GAGAAATACCAGAGCTGGATCC........................	22	1	1.00	1	0	0	1	0
..............................................................................................................................................................................AGAAATACCAGAGCTGGATCCAAGA....................	25	1	1.00	1	0	0	1	0
..................................................................................................................................................................................ATACCAGAGCTGGATCCAAGACGCCT...............	26	1	1.00	1	0	1	0	0
...GAAGGAGAAGGAGTTGCTGCGCAGC...............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........GAAGGAGTTGCTGCGCAG................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........AAGGAGTTGCTGCGCAGC...............................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...GAAGGAGAAGGAGTTGCTGC....................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................GAAATACCAGAGCTGGATCCAAGA....................	24	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................GCTGGATCCAAGACGCCT...............	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................GAAAGGAGAAATACCAGAGCTGG............................	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................GCTGGATCCAAGACGCCTG-T............	20	1	1.00	1	0	0	1	0

dm3

CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTAAGAAATTA-TTCACAAGACTTATTACTGCTGTACCAGT--------------AACAGGAACTCCCACGAACATATAC-------TAATGAATGTTGCA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATCCAAGACGCCTG-TCGCAACATCGTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................CCAGAGCTGGATCCAAGACGCCTG-TCGC.........	28	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCAGAGCTGGATCCAAGACGCCTG-TC...........	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGAGCTGGATCCAAGACGCCTG-TCGC.........	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAAGACGCCTG-TCGCAACATCGTC	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGAAGGAGTTGCTGCGCAGCATGG...........................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGGAGTTGCTGCGCAGCATGG...........................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........AGAAGGAGTTGCTGCGCAG................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCAAGACGCCTG-TCGCAACA.....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAGAAGGAGTTGCTGCG...................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GAGAAGGAGAAGGAGTTG........................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGAGAAGGAGAAGGAGTTGCTGCGCAGCATGGCCTCCATCAGTCCCGAAGGTACGAATTTA-TTCATAAGGAGTATTGTTGCTTGTACTGTACTGCATTTAACTTAATATGAACTCCCAAGAACATATTC-------TAATGTATGTTGTG-----TT------GCAGGAAAGGAGAAGTACCAGAGCTGGATTCAAGACGCATG-TCGCAACATTGTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................ATTC-------TAATGTATGTTGTG-----TT------GCAG...................................................	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................TCAAGACGCATG-TCGCAAC......	19	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATTCAAGACGCATG-TCGC.........	23	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................GCTGGATTCAAGACGCATG-T............	20	1	1.00	1	0	0	0	0	1	0	0
......GGAGAAGGAGTTGCTGCGCA.................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATTCAAGACGCATG-TCGCA........	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................AGTACCAGAGCTGGATTCAAGACGC.................	25	1	1.00	1	0	0	0	0	1	0	0

droYak3

CGAGAAGGAAAAGGAGTTGCTGCGCAGCATGGCATCCATCAGTCCCGAAGGTAAGAAT-TA-TTAATCC--------------GGGA------------------------------CAAAAGAATATAC-------TGATGTATATTGTA-----TT------GCAGGAAAGGAGAAATACCAGAGCTGGATTCAAGACGCATG-TCGCAACATTGTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....AGGAAAAGGAGTTGCTGCGC..................................................................................................................................................................................................	20	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................GAGCTGGATTCAAGACGCATG-T............	22	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.....AGGAAAAGGAGTTGCTGCGCAGCATGGC..........................................................................................................................................................................................	28	1	3.00	3	0	0	1	0	0	0	0	0	0	0	2
.....AGGAAAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......GGAAAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...GAAGGAAAAGGAGTTGCTGCGC..................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...GAAGGAAAAGGAGTTGCTGC....................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...GAAGGAAAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...GAAGGAAAAGGAGTTGCTGCGCA.................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.GAGAAGGAAAAGGAGTTGC.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..AGAAGGAAAAGGAGTTGCTGCGCAGCA..............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............GGAGTTGCTGCGCAGCATGGCATCCATC...................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATTCAAGACGCATG-TCGCAACA.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATTCAAGACGCATG-TCGCAACATTGTC	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AAGGAGAAATACCAGAGCTGGATT.........................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................GAAAGGAGAAATACCAGAGCTGG............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................GCATCCATCAGTCCCGAAG.........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....AAGGAAAAGGAGTTGCTGC....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........AGGAGTTGCTGCGCAGCATGG...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..AGAAGGAAAAGGAGTTGCTGCGCAGCAT.............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................AGAAATACCAGAGCTGGATT.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GAGTTGCTGCGCAGCATGG...........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GAAAGGAGAAATACCAGAGCTGGA...........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................AAAGGAGAAATACCAGAGCTG.............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATTCAAGACGCATG-T............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGGAGAAATACCAGAGCTG.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AATACCAGAGCTGGATTCAAGAC...................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...GAAGGAAAAGGAGTTGCTGCGCAGCATGG...........................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AAGGAGAAATACCAGAGCTGG............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......GGAAAAGGAGTTGCTGCGCAGC...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..AGAAGGAAAAGGAGTTGCTG.....................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AGAAATACCAGAGCTGGATTCAAGAC...................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...GAAGGAAAAGGAGTTGCTGCGCAGC...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..AGAAGGAAAAGGAGTTGCTGC....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AAGGAGAAATACCAGAGCTG.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........AAAGGAGTTGCTGCGCAGCATG............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GGATTCAAGACGCATG-TCGCAA.......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................AAAGGAGAAATACCAGAGCTGGA...........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AAGGAGAAATACCAGAGCT..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATTCAAGACGCATG-TCGCAACATT...	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...GAAGGAAAAGGAGTTGCT......................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AATACCAGAGCTGGATTCAAGA....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AAGGAGAAATACCAGAGCTGGATTCA.......................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GTTGCTGCGCAGCATGGC..........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCTGGATTCAAGACGCATG-TCGCAAC......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......GGAAAAGGAGTTGCTGCGCAGCATGGC..........................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AAGACGCATG-TCGCAACATT...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AATACCAGAGCTGGATTCAAGACGC.................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................CATCCATCAGTCCCGAAGG........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TGACAATGAAAAGGAGTTGCTGCGCAATATGGCCTCCATCAGCCCAGAAGGTAAGACATTT-TTCAAAAGAACAATTGGAGCTGAATCTT----------------------------------------------------------------------------------------------------------TAA--------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGAAAAGGAGAAGGAGCTGCTGCGCAACATGGCCTCCATCACTCAGGAAGGTAAAATATTTATTTT------TTATTGGAGCTGGAACGAT------------------------------ATTATATGT-------TAAGAT--ATTGTATACGTTT------GTAG---GGGAGAGGTCTAAAAGTTGGG------AC--AGT-TAGCAACAT--TC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGACAAGGAGAAGGAGCTTCTGCGCAACATGGCCTCCATCAGTCCGGAAGGTAATATATAA-TACATA-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGAGAAGGAAAAGGAGCTACTGCGCAGCATGGCCTCCATCAGTGCGGAAGGTAAGAAATCT-TGCATATAATGTAACTTA---------------------------------------------------------------------------------------------------TCGGTGAACCAGTTGCAAAATGTCCAGATCAAACAAGAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGAGAAGGAAAAGGATCTACTGCGCACCATGGCCTCCACCAGTCCGGAAGGTAAGTAGACG-TGTATTAAATGCATTTGAGCTAGATCAGT--------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGACAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAAGGTGAGAAACCA-CTTA--AAATTTACTTCAGCTAAGTCGG-------------------------------------------------------------------------------------------------------------------------------TA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGAGAAGGAGAAGGAGTTGTTGCGCAGCATGGCATCTATCAGTCCGGAAGGTGGGTAGCTAAAGCTCTA-----------------ATTAA--------------AATTAGGTAACTA------------------------AATGTTGTAAAT--TT------TCAGGCAAGGAGAAATACCAGAGCTGGATCCAGGACGCTTG-CCGCAACATCGTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGAGAAGGAGAAGGAATTGCTGCGCAGCATGGCTTCCATTAGTCCAGAAGGTAGGAGAGTAATGTGT------GCTTGGA-------ATGT--------------------------------TTTATATTCTTACCTAAAAT--CTTTATTATTTTTAAACAAAAAGGTAAGGAAAAGTACCAGAGCTGGATCCAGGATGCCTG-CCGCAACATTGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................GTAAGGAAAAGTACCAGAGCTGG............................	23	1	5.00	5	1	1	0	0	3	0
........................................................................................................................................................................GTAAGGAAAAGTACCAGAGCTG.............................	22	1	4.00	4	2	1	0	0	1	0
.......GAGAAGGAATTGCTGCGCAGCATGGC..........................................................................................................................................................................................	26	1	3.00	3	1	1	0	0	1	0
..............................................................................................................................................................................................GATCCAGGATGCCTG-CCGCAAC......	22	1	3.00	3	2	1	0	0	0	0
.................................TTCCATTAGTCCAGAAGGT.......................................................................................................................................................................	19	1	3.00	3	0	2	1	0	0	0
.................................................................................................................................................................................AGTACCAGAGCTGGATCCAGG.....................	21	1	2.00	2	1	0	0	0	1	0
..........................................................................................................................................................................AAGGAAAAGTACCAGAGCTG.............................	20	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................AAGTACCAGAGCTGGATCCAG......................	21	1	2.00	2	2	0	0	0	0	0
..........AAGGAATTGCTGCGCAGCATGGC..........................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATCCAGGAT...................	22	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................................................................................GATCCAGGATGCCTG-CCGCAA.......	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GGTAAGGAAAAGTACCAGAGCTGG............................	24	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATCCAGGATGCCT...............	26	1	1.00	1	0	1	0	0	0	0
............GGAATTGCTGCGCAGCATGGCTT........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............AATTGCTGCGCAGCATGGCTT........................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..............AATTGCTGCGCAGCATGGCTTCC......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......GAGAAGGAATTGCTGCGCA.................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................CCAGGATGCCTG-CCGCAACATTGTC	25	1	1.00	1	0	1	0	0	0	0
.....AGGAGAAGGAATTGCTGCGCAGCAT.............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...GAAGGAGAAGGAATTGCTGCGCA.................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................TACCAGAGCTGGATCCAGG.....................	19	1	1.00	1	0	0	0	1	0	0
.........GAAGGAATTGCTGCGCAGCAT.............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATCCA.......................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................ATGCCTG-CCGCAACATTGT.	19	1	1.00	1	1	0	0	0	0	0
..AGAAGGAGAAGGAATTGCTGCG...................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................ACCAGAGCTGGATCCAGG.....................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................AAGGAAAAGTACCAGAGCTGG............................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................TAAGGAAAAGTACCAGAG................................	18	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................GTAAGGAAAAGTACCAGAGCT..............................	21	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................GATCCAGGATGCCTG-CCGCAACATT...	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................ATCCAGGATGCCTG-CCGCAACATTGT.	26	1	1.00	1	1	0	0	0	0	0
.............GAATTGCTGCGCAGCATGGC..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................GATCCAGGATGCCTG-CCGCAACA.....	23	1	1.00	1	0	1	0	0	0	0
.............GAATTGCTGCGCAGCATGGCTTCC......................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......GAGAAGGAATTGCTGCGCAGC...............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................TTCCATTAGTCCAGAAGTC.......................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0

droBip1

CGAGAAGGAGAAGGAATTGCTGCGCAGCATGGCTTCCATCAGTCCAGAGGGTAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATTCAGGACGCCTG-CCGCAACATTGTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGAGAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCCAGGATGCCTG-TCGCAATGTGGTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................AAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGG............................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.....AGGAAAAGGAGCTGCTGC....................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GGATGCCTG-TCGCAATGTGGT.	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................GAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACC....................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................AAGTACCAGAGCTGGATCCAGGAT...................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................GAGCTGGATCCAGGATGCCTG-TC...........	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........AAAGGAGCTGCTGCGCAG................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGAGCTGGATCCAGGATGCCT...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................CAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTG.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...GAAGGAAAAGGAGCTGCTGCGC..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................AAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGAT..........................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................ATGGCCTCCATTAGTCCGGAGG.........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................ATGGCCTCCATTAGTCCGGA...........................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATCCAGGATGCCTG-TCGCAATG.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GCATGGCCTCCATTAGTCCGG............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................TGGATCCAGGATGCCTG-TCGCAATGT....	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATCCAGGATGCCT...............	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................CCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGT.......................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTG.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................TTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAG........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................GGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGG............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGAGCTGGATCCAGGATG..................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................GGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTG.............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGAT..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGGATGCCTG-TCGCAATG.....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAGAGCTGGATCCAGGATG..................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
TGAGAAGGAAAAGGAGCTGCTGCGC..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................ATTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAA...........................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................AGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAG........................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................AG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCCAG......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GCATGGCCTCCATTAGTCCGGAGG.........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGAGAAGGAAAAGGAGCTGCTGCGCAGCATGGCCTCCATTAGTCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCCAGGATGCCTG-TCGCAATGTGGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.GAGAAGGAAAAGGAGCTGCTGCGC..................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
....AAGGAAAAGGAGCTGCTGCGCA.................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
....................................................AAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGGATCC........................	25	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................AAAGTACCAGAGCTGGATCCAGGATGCCT...............	29	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................GGATCCAGGATGCCTG-TCGCAATGT....	25	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATCCAGGAT...................	22	1	1.00	1	1	0	0	0	0	0
............................ATGGCCTCCATTAGTCCGGA...........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..AGAAGGAAAAGGAGCTGC.......................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................GCAAG----------------------------------------------------------------------------------------------------------------------GAAAAGTACCAGAGCTGG............................	23	1	1.00	1	0	1	0	0	0	0
...GAAGGAAAAGGAGCTGCTGCGCAG................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

TGAAAAGGAGAAGGAACTGCTGAGAAGCATGGCTTCCATTGCCCCAGAAGGTGAGTGAATTGTACAGAA-----------------ATAAA--------------AATAGAGAATTCTAACAAAATA----------------------CC-----TT------TTAGGCAAGGAGAAATATCAAAAATGGATTCAGGATGCCTG-CCGGAATGTGGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................AATGGATTCAGGATGCCT...............	18	1	4.00	4	0	0	0	4	0
...AAAGGAGAAGGAACTGCTGA....................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................GATGCCTG-CCGGAATGTG...	18	1	2.00	2	0	0	0	2	0
.........GAAGGAACTGCTGAGAAGC...............................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
...............................................................................................................................................................................................ATTCAGGATGCCTG-CCGGAATGTGGTT	27	1	2.00	2	0	0	1	1	0
....................................................................................................................................................................................ATCAAAAATGGATTCAGGATGCCT...............	24	1	2.00	2	0	0	0	2	0
...........AGGAACTGCTGAGAAGCAT.............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................................CAGGATGCCTG-CCGGAAT......	18	1	1.00	1	0	0	0	1	0
...AAAGGAGAAGGAACTGCTGAGA..................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................TCAGGATGCCTG-CCGGAATGTG...	22	1	1.00	1	0	0	0	1	0
.......GAGAAGGAACTGCTGAGAAGC...............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................GGATGCCTG-CCGGAATGTG...	19	1	1.00	1	0	0	0	1	0
.......GAGAAGGAACTGCTGAGAAGCATGGCT.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................CAGGATGCCTG-CCGGAATGT....	20	1	1.00	1	0	0	1	0	0
.........GAAGGAACTGCTGAGAAGCATGGCTT........................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................ATTCAGGATGCCTG-CCGGA........	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................AATGGATTCAGGATGCCTG-CCGGAA.......	25	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................ATTCAGGATGCCTG-CCGG.........	18	1	1.00	1	0	0	0	1	0
TGAAAAGGAGAAGGAACTGCTGAGA..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................ATTCAGGATGCCTG-CCGGAATGTGGT.	26	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................GGATTCAGGATGCCTG-CCGGAAT......	23	1	1.00	1	0	0	0	1	0
.............GAACTGCTGAGAAGCATGGC..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................GATGCCTG-CCGGAATGTGGTT	21	1	1.00	1	0	0	0	1	0
..................GCTGAGAAGCATGGCTTCCATTGC.................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................GGATTCAGGATGCCTG-CCGGAA.......	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................ATGGATTCAGGATGCCTG-CC...........	20	1	1.00	1	0	1	0	0	0
.......GAGAAGGAACTGCTGAGAAGCATGGC..........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................ATGCCTG-CCGGAATGTGG..	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................AAGGAGAAATATCAAAAATGGAT..........................	23	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................TCAGGATGCCTG-CCGGAATGTGGT.	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................CAAAAATGGATTCAGGATGCCTG-C............	24	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................AAAAATGGATTCAGGATGCCT...............	21	1	1.00	1	0	0	1	0	0
.........GAAGGAACTGCTGAGAAGCATGGCTTC.......................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................GGAGAAATATCAAAAATGGA...........................	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................AAATGGATTCAGGATGCCT...............	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................ATGCCTG-CCGGAATGTGGT.	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................AAAATGGATTCAGGATGCCTG-CCGGA........	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................TATCAAAAATGGATTCAGGATGCCT...............	25	1	1.00	1	0	0	0	1	0

droVir3

CGAGTCCGAAAAGCAAATGCTGCGCAGCATGGCCTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTACCAGAGCTGGATACAGGATGCCTG-TCGCAATGTGGTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................ATGCCTG-TCGCAATGTGGT.	19	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...GTCCGAAAAGCAAATGCTGCGC..................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGGATGCCTG-TCGCAATGTGGT.	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................ACCAGAGCTGGATACAGGATGC.................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GTCCGAAAAGCAAATGCTGCGCA.................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAAAAGCAAATGCTGCGCAGCATGGCCT........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCAGAGCTGGATACAGGATGCCT...............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GA............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CCTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------G.............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGCCTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GA............................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGCCTCCCTGACGCCGGAGGGCAA.....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GATGCCTG-TCGCAATGTGGT.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGCATGGCCTCCCTGACGCCGGA...........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATACAGGATGCCTG-TCG..........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGAGCTGGATACAGGATGCCT...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAGGATGCCTG-TCGCAATGTGGT.	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATACAGGATGCCTG-T............	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGCAAATGCTGCGCAGCATG............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....CCGAAAAGCAAATGCTGCGC..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................AGTACCAGAGCTGGATACAGGATGCCC...............	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGAAAAGCAAATGCTGCGCAGC...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATACAGGATGCCT...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAG----------------------------------------------------------------------------------------------------------------------GAGAAGTACCAGAGCTGGATACAGGATGCCG...............	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................AGAGCTGGATACAGGATGCCTG-T............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGCGCAGCATGGCCTCCCTGAC.................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CCCTGACGCCGGAGGGCAA.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AGAAGTACCAGAGCTGGAT..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATACAGGATGCCT...............	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAAAAGCAAATGCTGCGCAGC...............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTCCCTGACGCCGGAGGGCAAG----------------------------------------------------------------------------------------------------------------------GAGA..........................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AGTACCAGAGCTGGATACAGGATGCCTG-T............	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................GTACCAGAGCTGGATACA.......................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCAGAGCTGGATACAGGATGCCTG-TC...........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CATGGCCTCCCTGACGCCGGAGG.........................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTGGATACAGGATGCCTG-T............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GAGAAGTACCAGAGCTGGATAC........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AATGCTGCGCAGCATGGCCTCC......................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TACCAGAGCTGGATACAGGATGCC................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATACAGGATGCCTG-TCGC.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAAAGCAAATGCTGCGCAG................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAAGTACCAGAGCTGGATACAGGAT...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGAGGCCGACAAGGAGCTGCTGCGCAGCATGGCCTCGCTGGCACCGGAAGGCAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTATCAGAGTTGGATTCAGGATGCCTG-CCGCAATGTGGTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......CGACAAGGAGCTGCTGCGCAGC...............................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0
......CGACAAGGAGCTGCTGCGC..................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
TGAGGCCGACAAGGAGCTGCTGCG...................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0	0
..........................................................................................................................................................................................GTTGGATTCAGGATGCCTG-CC...........	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................AAGTATCAGAGTTGGATTCAGGAT...................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................ATCAGAGTTGGATTCAGGAT...................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................GGATTCAGGATGCCTG-CCGCAATGT....	25	1	1.00	1	1	0	0	0	0	0
.................................CTCGCTGGCACCGGAAGGCAAG----------------------------------------------------------------------------------------------------------------------GAGA..........................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................ATCAGAGTTGGATTCAGGATGC.................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................ATCAGAGTTGGATTCAGGATGCCTG-CC...........	27	1	1.00	1	1	0	0	0	0	0
......CGACAAGGAGCTGCTGCGCAGCATG............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

TGAGGCGGATAAGCAGCTGCTGCGCAGCATGGCTTCGCTGACGCCGGAGGGTAAG----------------------------------------------------------------------------------------------------------------------GAGAAGTATCAGAGCTGGATACAGGATGCGTG-TCGCAATGTCGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................GCTTCGCTGACGCCGGAGGGT.......................................................................................................................................................................	21	1	1.00	1	1	0
......GGATAAGCAGCTGCTGCGC..................................................................................................................................................................................................	19	1	1.00	1	1	0
................................................................................................................................................................................................TACAGGATGCGTG-TCGCAATG.....	21	1	1.00	1	1	0

dsi_21473

2l:6140398-6140482 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads