ID:

dsi_21450

Coordinate:

3r:17633542-17633691 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.7	-21.7	-21.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGGCCGCCTTTCAAGGACTCCTCTTGATTTACGAGCGTCCTGTTCACCCTCACCTCACCATCCCCTCGCGGCCTACAACCTTTGTGCATACTTGAGAAAGTTAATAAGCCTGGCGATTGAAAGCACGCCGGCTTCTATTCTGTCTGAAAATGAATTTAAAACTTTGCCCCAAATTGATTCCATTCCCGCTTATTTTGCAGGCGGCCAACGATCGTCTGCGGCACTTTCAAATGATAAACGGCGGCGCCGG ************************************************.................((((..(((((...))))).....((.(((.((.....(((((.((((..........))))))))).....)).))).))(((.(((((.............))))).)))......))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..........................................................................................................................................................................................................GGCCAACGATCGTCTGCGGC............................	20	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................GCACGCCGGCTTCTATTC..............................................................................................................	18	0	1	1.00	1	0	1	0	0	0
....................CTCTTGATTTAGGAG.......................................................................................................................................................................................................................	15	1	7	0.29	2	0	0	2	0	0
...........................................................................................................................................................................................................GCCAACGACCGACTGCGCC............................	19	3	20	0.10	2	0	0	0	2	0
...........................................................................................................................................................................................................GCCAACGACCGGCTGCGCCA...........................	20	3	10	0.10	1	0	0	0	1	0
........................................................................................................................................ATTCTGTCTGAACATG..................................................................................................	16	1	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

GCCGGCGGAAAGTTCCTGAGGAGAACTAAATGCTCGCAGGACAAGTGGGAGTGGAGTGGTAGGGGAGCGCCGGATGTTGGAAACACGTATGAACTCTTTCAATTATTCGGACCGCTAACTTTCGTGCGGCCGAAGATAAGACAGACTTTTACTTAAATTTTGAAACGGGGTTTAACTAAGGTAAGGGCGAATAAAACGTCCGCCGGTTGCTAGCAGACGCCGTGAAAGTTTACTATTTGCCGCCGCGGCC ************************************************.................((((..(((((...))))).....((.(((.((.....(((((.((((..........))))))))).....)).))).))(((.(((((.............))))).)))......))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
GCCGGCGGAAAGGTC...........................................................................................................................................................................................................................................	15	1	18	0.72	13	5	0	8	0	0
.......GAAAGTTCCTGCGGAGA..................................................................................................................................................................................................................................	17	1	2	0.50	1	1	0	0	0	0
.....CGGAAAGTTCCTCAGGACGAC................................................................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................CGTCCGGCGGTCGCAAGCAG..................................	20	3	4	0.25	1	0	1	0	0	0
.......................................................................................................................................................................GGGTTCGACTAAGGTAAGGC...............................................................	20	3	7	0.14	1	0	0	0	1	0
.........................................................................................................................................................AAAATTTTGCAACGGGGTT..............................................................................	19	2	7	0.14	1	0	0	0	1	0
..................................................................GCGCTGGATGTTGGAATCG.....................................................................................................................................................................	19	3	8	0.13	1	1	0	0	0	0
................................................................GAGCGCTGGATGTGGGAAT.......................................................................................................................................................................	19	3	9	0.11	1	1	0	0	0	0
.....................................................GAGTAGAAAGGGAGCGCC...................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................................AACCAAGGTAAGGGTG.............................................................	16	2	20	0.05	1	0	0	1	0	0
....................................................GGAGGGGTAGGGGAG.......................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0

Generated: 04/24/2015 at 12:07 AM