ID:

dsi_21444

 Coordinate:

2r:3015064-3015213 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.2 -7.1 -6.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAATCCCAAATAATACCAGTTCCCCCAACAACCGCAACAAACACAAGTGCAATTCATCGGCAAAAATTAATATAAAGTGCAAATGCATTGTAGCTGAAACTCAAACAATAGTAAAAATACATACATAAGTGGTGAAGAAGGAAAAGGAAATAGTTCTTAAAATAACGCAAATCGAGAGCATATATTCATATTTGTACAGATATTATATGGCGGCTGCATAGTGCAAACCGTGCGGATGAGGGAGTACAG
******************************************************...(((((..............(((((....)))))...)))))......************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
......................................................TCATCGGCAAAAATTAATATAAAG............................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................CATTGTAGCTGAAACTCA.................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
...........................................ACAAGTGCAATTCATCGGC............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................TGAAGAAGGAAAAGGAAATAGTTCT............................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TAGTGCAAACCGTGCGGATGAGGGA...... 25 0 1 1.00 1 1 0 0 0 0 0
.................................CGCAACAAACACAAGTGCAATTCATCGGC............................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GGCTGCATAGTGCAAACCG................... 19 0 1 1.00 1 0 0 0 1 0 0
.........................................................................TAAAGTGCAAATGCATTGTAGCTGA........................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................AATCGAGAGCATATATTCATATTTGTA..................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TGCATTGTAGCTGAAACTCAAACAATA........................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.....................TCCCCCAACAACCGCAACAAACACAAGTG........................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................TTAAAATAACGCAAATCGAGAGCATA................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................TACATACATAAGTGGTGAAGAAGGA........................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................TGGCGGCTGCATAGTGCAAACCGTGCGGA............. 29 0 1 1.00 1 1 0 0 0 0 0
.....................................................TTCATCGGCAAAAATTAATATAAAG............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................GCTGAAACTCAAAGA.............................................................................................................................................. 15 1 20 0.75 15 0 15 0 0 0 0
.............................................................................................GCTGAAACTCAAAGAA............................................................................................................................................. 16 1 16 0.63 10 0 10 0 0 0 0
.............................................................................................................................................................................................................................GTGCAAACCGTGAGGA............. 16 1 2 0.50 1 0 0 0 0 1 0
..............................................................................................................................................................................................................................TGCAAGTCGAGCGGATGAGG........ 20 3 10 0.20 2 0 0 1 0 0 1
............................................................................................................................................................................................................................AGTGAATACCGTGCGG.............. 16 2 20 0.10 2 0 2 0 0 0 0
............................................................................................................................................................................................................................GGTGCAAACCGTGAGGA............. 17 2 11 0.09 1 0 0 0 0 1 0
..........................................................................................................................................AAGGCTAAGGAAATAGT............................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................................ATACGATATGGCCGCTGCA............................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTTTAGGGTTTATTATGGTCAAGGGGGTTGTTGGCGTTGTTTGTGTTCACGTTAAGTAGCCGTTTTTAATTATATTTCACGTTTACGTAACATCGACTTTGAGTTTGTTATCATTTTTATGTATGTATTCACCACTTCTTCCTTTTCCTTTATCAAGAATTTTATTGCGTTTAGCTCTCGTATATAAGTATAAACATGTCTATAATATACCGCCGACGTATCACGTTTGGCACGCCTACTCCCTCATGTC
**************************************************************************************************************************************************...(((((..............(((((....)))))...)))))......****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
........................................................................................AACTTCGGCTTTGAGTTTGTTAT........................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................AGAATTTTATTGCGTTTAGCT.......................................................................... 21 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................CCTGTTCCTTTATCAAGATTTTT....................................................................................... 23 2 1 1.00 1 0 0 1 0 0
........................................................................................................................................................................................................................CGCTTCACGTTTGGCACGC............... 19 2 4 0.25 1 0 0 0 1 0
..................................................................................TGACGTAACATCGAATGTGA.................................................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0
.........................GGTTGCTGGCGTTGTT................................................................................................................................................................................................................. 16 1 14 0.14 2 2 0 0 0 0
.........................GGTTGTGGGAGTTTTTTGTGT............................................................................................................................................................................................................ 21 3 14 0.07 1 0 0 0 0 1
................................................ACGTTGAGTAGCCGTAT......................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................ATACTATACCGGCGACG................................ 17 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3015014-3015263 - dsi_21444 CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----GAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACCGTGCGGATGAGGG---------------------AG------------------TACA---------G
droSec2 scaffold_26:661943-662192 - CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----GAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACCGTGCGGATGAGGG---------------------AG------------------TACA---------G
dm3 chr2R:2018944-2019191 - CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----CAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACT--GCGGCTGAGGG---------------------AA------------------TACA---------G
droEre2 scaffold_4929:20315106-20315355 + CAAA-------------------------TCC--CA------AATAATTCC-AGT-------------------------TC----TC--------C------------CAACAACCGCAACA--------------------------------AACACAACAAGTGCAATTCATCGGCAGAGAGA------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAG-----GAA---TA--------GTA-AAAAT-ACATACATAT----GTGGTGAAGAAG-----GAAAATT--A----------AATAGTTCTTATAA-CACGCAAATCG-AGAGCATATATTCATAGTTGTACAAA--TATTATATGGC--------------GGCTGCATAGTGCAAATC--GCGGGTGAGGG---------------------AA------------------TTCA---------G
droYak3 2L:20460095-20460327 + CAAA-------------------------ACC--CA------AATAATTCC-AGT-------------------------TC----TC--------C------------C---------AACA--------------------------------AACACAACAAGTGCAATTCATCGTCAGAGATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----TAA---TA--------GTA-AAAAT-ACATA----T----GTGGCGAGGAAT-----GACAAGA--A----------AATAGTTCTTAAA-AACCGGAAACCG-AGAGTATATATTCATATTTGTACAAA--TATTATATGGC--------------GGCTGCCTAGTGCA------GCGGTTGAGAA---------------------AA------------------TTTA---------G
droEug1 scf7180000409551:428160-428402 - AAAA-------------------------TCG--CA------AGTAATACC-A---------------------------TA----CCCTTT--G-TGGGGAACGAAAAAAAAAAC---CACA--------------------------------AAAACAACAAGTGCAATTTATCGGCAAAAATT------GAAA--------------------------------------------TATAGTGCA-AATGCTTTGTAGCTGAACCTCAGA-----AAA---TA--------AGA--AAAT-ACATACATAC----GTAGTAAAGGAG-----ACGG---------------------------AAATAACACAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATG-----------------GCTGCATAGTGCAAATC--GCGGATGAA-C---------------------AA------------------TTGG---------A
droBia1 scf7180000302291:66253-66492 - TAAG-------------------------TAA--CT------AATAATACC-AGC-------------------------TC----TC--------CC-----------CATCACC---AACA--------------------------------AAAACAAAAAGTGCAATTCATCGGCAGATAT-------AAAA--------------------------------------------TAACGTGCA-AATGCATTGTATCTGAAGCTAATA-----GAA---TA--------GGA--AAAT-ACATATA--------TATTGAAGAGG-----G-GGA----G----------AATAGTTCTTTAAATAACGCAAAAAA-AGAGCATATATTCATATTTGTATAGA--TATTATATAGC--------------TTCTGCATAGTGCAAAAC--GCGGATGAACG---------------------AA------------------TTCG---------A
droTak1 scf7180000415401:620832-621110 - AAAG-------------------------TCC--CG------AATAATACCCAGT-------------------------TCTCCCCC--------CT--------AAGCAACAAC---AACA--------------------------------AAAACAACAAGTGCAATTCATCGGCAGAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCTCAGA-----AAA---TA--------GGA-AAAAT-ACATACATACAAACGTAGTGAAGAAGCA--GGCGGAGGTGAAACACA----CATAGTTCTTTAAATAACGCAAATCGGAGAGCATATATTCATATTTGTACAGA--TATTATATATC--------ATCATCGGCTGCATAGTGCAAATC--GCGTATGAGGG---------------------AA------------------TTCG---------A
droEle1 scf7180000490999:56800-57046 - A-AG-------------------------TCC--CA------AATAATACC-AAT-------------------------CCCCG-CC----C---CT-----------CATCAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGACGGCAAAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCCCAGA-----AAA---TA--------GGA-AAAAT-AA------------GTAGTGAAGAAGAA--GGCAGAGG--A----------AATAGTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGT--------------GGCTGCATAGTGCAAATC--GCGGGTGAAGA---------------------AA------------------TTCA---------A
droRho1 scf7180000779415:18529-18771 - A-AG-------------------------TCC--CA------AATAATACC-AGT-------------------------CC----CC----T---CT-----------CATCAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGTCGGCAGAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCTCAGA-----AAA---TA--------GGA-AAAAT-A--------A----GTAATGAAGAAG-----GCGGAGG--A----------AATAGTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGTGG------------CGCTGCATAGTGCAAATC--GCGGATGAGGG---------------------AA------------------TTCG---------T
droFic1 scf7180000453840:51560-51797 - AAAG-------------------------TCC--CA------AATAATACC-AGT-------------------------CC----CC-CCT--C-C------------CCACAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGTCGGCAGAAATT------AAAA--------------------------------------------TAAAGT-------GCATTGTAGCTGAACCTGAGA-----AAA---TA--------GAA-AAGAT-AC------------GTGGTGAAAAAG-----GCAGAGG--A----------AATATTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGT--------------GGCTGCATAGTGCAAATC--GCGGATGAAGC---------------------AG------------------TTCT---------C
droKik1 scf7180000302817:190225-190497 + AAAT-------------------------TCCCCCA------AATAATACC-AATCAAAGATACACCCGACCCCAACCAATAC---CC--------C------------CCATACAC---ACA--------------------------------GAAACAACAAGTGCAATTCGTCGTCAGAAATCGAAATCGAAA--------------------------------------------TAAAGTGCAAAATGCATTGTAGCTGAACC--AGA-----AATAAATA--------AGA-GAAAT-A--------------------------------AGAGG--A----------AACAGTGCTTTAAATAACTCAAATCG-AGAGCGTATATTCATATTTGTACAGA--TATTATATAGTGGACGTCCAA-GTTAGCTGAGAATTCCCAGCAATTTGAAT---GA---------------------AA------------------TTCG---------G
droAna3 scaffold_13266:18779245-18779465 + CAAG-------------------------CCCCACAACACAACATAATACCCTGT-------------------------TC----CC--------T------------C----------ACA------------------------------------AAACAAGTGCAATTCATCG-CAGAAACG--------AA--------------------------------------------TAAAGTGCA-AACGCCTTGTAGCTGAACCA--GA-----GATTATTCG-----A-AGA--AAGT-ACACACGTAC----G-AGTGAAGCG------GCAGA-G--A----------AATA-TTCTTTAAATAACGTAAATCG-AGAGCATATATTCATATTTGTACAGA--AATTGTGTAGT--------------TGCTGCATAGTGCAAA----------------------------------------------------------------------
droBip1 scf7180000396417:78621-78928 - AA-G-------------------------CCCCACAAT----TATAATACCCTGT-------------------------TC----CC----TCGCCG--------A--CAACATCGACAACA------------------------------------AAACAAGTGCAATTCATCG-CAGAAAT-------GAAA--------------------------------------------TAAAGTGCA-AACGCCTTGTAGCTGAACC--AGA-----GATTTAT-G-----A-AGA-AAAGT-ACACACGTATGTACGAAGTGAAAACGAATCGGCGGA-G--A----------AATAATTCTTTAAATAACGTAAATCG-AGAGCATATATTCATATTTGTACAGA--AATTATATAGC--------------CGCTGCACAGTGCAAAAC--A---GTGA--AAATAGAAGCGGGTCTCTAAACAACTCGCTCCACGTTTGACGCTCGACGCTCGACG
dp5 3:17940074-17940320 - CAAAAAAGAAGAAAGAGAGAGAGAGAGAGCCC--C-------TATAATAAATAAA-------------------------TAGCCCCC----------------------------------------------------------------------ACAACAAGTGCAATTCGTA-------------------AGAAAGTGCAAAACAAAACAAAACAAAACAA---AACAAAACGAAACGAAACAA-AACGCATTGTAGCTGAGAACCCAACCACAAATTAGA-GGAGAGAAAGA--AAG-----------------------------------------------------TATATTTCTTAAAATAA-------------ATATATATTCATATTTGTATAGA--TATTTTATGGC--------AA-AGTGGCTGCAAAGTGCAAAC---------------------------------------------------------------------
droPer2 scaffold_73:115703-115940 + CAAAAAAGAAAAAAAAGAG--AGAGAGAGCCC--C-------TATAATAAATAAA-------------------------TAGCCCCC----------------------------------------------------------------------ACAACAAGTGCAATTCG-------------------AAAGAAAGTGCA----------AAACAAAACAA---AACAAAACGAAACGAAACAA-AACGCATTGTAGCTGAGAACCAAACCACAAATTAGA-GGAAAGA-AGA--AAG-----------------------------------------------------TATATTTCTTAAAATAAA-----TAT----ATGTATATTCATATTTGTATAGA--TATTATATAGC--------AA-AGTGGCTGCAAAGTGCAAAC---------------------------------------------------------------------
droWil2 scf2_1100000004513:5960216-5960382 + AAAATAAAAGCTTAAAAAT--CCCTTGCGCCC--CC------AGTTGTACC-CCC-------------------------TC----CC----C---CT-----------CT-----------------------------------------------TCAACAAGTGCAATTTAAAT---------------AAAA----CAAAA----------AAATTAAACAA---AAC---ACGCAAAAAGTGCA-AATGCATTGTAGCTGAACCA-----------------------------------------------------------------------------------------------------------------AGAGAAAAAATTAATATCTCAA---AAAT------------------------------AAAATACAAAA---------------------------------------------------------------------
droVir3 scaffold_12875:4725898-4726016 - CAAAAAAAAAAAAA--------------------------------ATA--------------------------------A----AA--------A------------TAAAAATTGT--TAAACACAAGTGCAATTTAAACAAAATATATTTA----------------CGCATAGAGAGAAACC------AA----------------------------CCACAACAA---------CAAAGTGCA-AATGCATTGTAGCTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:25341125-25341304 + CAAA-------------------------ACA--AA------ATAAATACA-AAT-------------------------TG----TT----------------------------------A-----------------------------------AACACAAGTGCAATTGA-----AAAAATA------TATA-------------------TATTTAGATAA---AA---------CAAAGTGCA-AATGCAGTGTAGCTGAAAAAAAGA-----AAA-------------AGAAAACATTCT------------GACGTG--------------------CAACAGTTTTATA----TATT-----TATACATATAT----ATATATATATATATTTATATATA--TG-TATATG------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----GAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACCGTGCGGATGAGGG---------------------AG------------------TACA---------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................TCATCGGCAAAAATT------AATA--------------------------------------------TAAAG.....................................................................................................................................................................................................................................................................................2411.00100000001000000000
...............................................................................................................................................................................................................................................................CATTGTAGCTGAAACTCA..........................................................................................................................................................................................................................................................1811.00100100000000000000
.................................................................................................................................................................ACAAGTGCAATTCATCGGC.......................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................TGAAGAAG-----GAAAAGG--A----------AATAGTTCT.............................................................................................................................................................2511.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCAAACCGTGCGGATGAGGG---------------------A.................................2511.00100000001000000000
....................................................................................................................CGCAACA-----------------------------------AACACAAGTGCAATTCATCGGC.......................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCATAGTGCAAACCG...................................................................1911.00100000100000000000
.................................................................................................................................................................................................................................................TAAAGTGCA-AATGCATTGTAGCTGA................................................................................................................................................................................................................................................................2511.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................AATCG-AGAGCATATATTCATATTTGTA.....................................................................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................TGCATTGTAGCTGAAACTCAAA-----CAA---TA--------...................................................................................................................................................................................................................................2711.00100000000010000000
................................................................................TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTG...................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTAAAATAACGCAAATCG-AGAGCATA...................................................................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................T-ACATACATAA----GTGGTGAAGAAG-----GA........................................................................................................................................................................................2511.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC--------------GGCTGCATAGTGCAAACCGTGCGGA.............................................................2911.00100000001000000000
...........................................................................................................................................................................TTCATCGGCAAAAATT------AATA--------------------------------------------TAAAG.....................................................................................................................................................................................................................................................................................2511.00100000001000000000
droSec2
CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----GAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACCGTGCGGATGAGGG---------------------AG------------------TACA---------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................GTGGTGAAGAAG-----GAAAAG....................................................................................................................................................................................1811.0010010
..........................................................................................................................A-----------------------------------AACACAAGTGCAATTCATCGGCAAAA...................................................................................................................................................................................................................................................................................................................................................2711.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCGTGCGGATGAGGG---------------------A.................................2111.0010010
.....................................................................................................................................................................................................................................................................................................................TACATAA----GTGGTGAAGAAG-----GAAAAGG--.................................................................................................................................................................................2611.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCAAACCGTGCGGATGAGGG---------------------A.................................2611.0010010
....................................................................................................................................................................................................................................................................................................................ATACATAA----GTGGTGAAGAAG-----GAAA......................................................................................................................................................................................2411.0010100
dm3
CAAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAGTGCAATTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACATAA----GTGGTGAAGAAG-----CAAAAGG--A----------AATAGTTCTTAAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATGGC--------------GGCTGCATAGTGCAAACT--GCGGCTGAGGG---------------------AA------------------TACA---------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
...............................................TACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGCATTGTAGCTGAAACT............................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACT--GCGGCTGAGGG---------------------A.................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................AA----GTGGTGAAGAAG-----CAAAAGG--A----------A.....................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................CC--------C------------CAACAACCGCAACA-----------------------------------AACAC........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................A----GTGGTGAAGAAG-----CAAAAGG--A----------......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................CAACAACCGCAACA-----------------------------------AACACAAGT....................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GAAG-----CAAAAGG--A----------AATAGTTCTTAAAAT.......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TA--------GTA-AAAAT-ACATACATAA----GTGGT......................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAGA--TATTATATGGC--------------GGC...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................CC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAAACT--GCGGCTGAGGG---------------------AA------------------..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGCAAACT--GCGGCTGAGGG---------------------A.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATACATAA----GTGGTGAAGAAG-----CAAAAGG--A----------......................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GA--TATTATATGGC--------------GGCTGCA...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAACT--GCGGCTGAGGG---------------------A.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................G-AGAGCATATATTCATATTTGTACAGA--A..............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAACTCAAA-----CAA---TA--------GTA-AAAAT-ACATACA..................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TACC-AGT-------------------------TC----CC--------C------------CAACAACCGCAACA-----------------------------------.............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................A-AATGCATTGTAGCTGAAACTCAA.........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATAGTGCAAACT--GCGGCTGAGGG---------------------..................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GA--TATTATATGGC--------------GGCTGC................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.AAA-------------------------TCC--CA------AATAATACC-AGT-------------------------TC----CC--------C------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACGCAAATCG-AGAGCATA...................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ACA-----------------------------------AACACAAGTGCAATTCATCGGCA......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC----CC--------C------------CAACAACCGCAACA-----------------------------------AACACAAG.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGA--TATTATATGGC--------------GGCTGC................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGGC--------------GGCTGCATAGTGCAAAC.....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCAAACT--GCGGCTGAGGG---------------------AA------------------..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................TAA----GTGGTGAAGAAG-----CAAAAGG--A----------......................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TGAAGAAG-----CAAAAGG--A----------AATAGTTCTT............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................CGCAACA-----------------------------------AACACAAGTGCAATTCATCGGC.......................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATAGTGCAAACT--GCGGCTGAGGG---------------------AA------------------..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GTGCAATTCATCGGCAAAAA..................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGTGCAAACT--GCGGCTGAG.........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TACATAA----GTGGTGAAGAAG-----CAAAAGG--A----------......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................AA----GTGGTGAAGAAG-----CAAA......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................CACAAGTGCAATTCATCGG........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................T------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTA.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTG...................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACT--GCGGCTGAGGG---------------------..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTACAGA--TATTATATGGC--------------GGC...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................TTCATCGGCAAAAATT------AATA--------------------------------------------TAAAGTGC..................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACAAGTGCAATTCATCGGCAAA....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGTGCAAACT--GCGGCTGAGGG---------------------..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................A-----------------------------------AACACAAGTGCAATTCATCG.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................GCA-AATGCATTGTAGCTGAAACT............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TAA----GTGGTGAAGAAG-----CAAAAG....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................AA----GTGGTGAAGAAG-----CAAAAGG--A----------......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACT--GCGGCTGAGGG---------------------AA------------------..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTAGCTGAAACTCAAA-----CAA---TA--------GTA-AAA............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AG-----CAAAAGG--A----------AATAGTTCTTAA..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAA-------------------------TCC--CA------AATAATTCC-AGT-------------------------TC----TC--------C------------CAACAACCGCAACA--------------------------------AACACAACAAGTGCAATTCATCGGCAGAGAGA------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAG-----GAA---TA--------GTA-AAAAT-ACATACATAT----GTGGTGAAGAAG-----GAAAATT--A----------AATAGTTCTTATAA-CACGCAAATCG-AGAGCATATATTCATAGTTGTACAAA--TATTATATGGC--------------GGCTGCATAGTGCAAATC--GCGGGTGAGGG---------------------AA------------------TTCA---------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................T----GTGGTGAAGAAG-----GAAAA.....................................................................................................................................................................................1811.0010000100
................................................................................................................................................................................................................................................................ATTGTAGCTGAAACTCAAG-----GAA---T............................................................................................................................................................................................................................................2311.0010000100
............................................................................................................................................................................................................................................................................................................................................................................CTTATAA-CACGCAAATCG-AGAGC......................................................................................................................................2311.0010000100
................................................................................................................................................................................................................................................................................................................................................................................TAA-CACGCAAATCG-AGAGCATATA.................................................................................................................................2411.0011000000
............................................................................................................................................................................................................................................................................................................................................................................CTTATAA-CACGCAAATCG-A..........................................................................................................................................1911.0011000000
droYak3
CAAA-------------------------ACC--CA------AATAATTCC-AGT-------------------------TC----TC--------C------------C---------AACA--------------------------------AACACAACAAGTGCAATTCATCGTCAGAGATT------AATA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAAACTCAAA-----TAA---TA--------GTA-AAAAT-ACATA----T----GTGGCGAGGAAT-----GACAAGA--A----------AATAGTTCTTAAA-AACCGGAAACCG-AGAGTATATATTCATATTTGTACAAA--TATTATATGGC--------------GGCTGCCTAGTGCA------GCGGTTGAGAA---------------------AA------------------TTTA---------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................AACAAGTGCAATTCATCGTCAGAGAT.................................................................................................................................................................................................................................................................................................................................................2617.00700000000007
....................................................................................................................................................................................................................................................AGTGCA-AATGCATTGTAGCTG.................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................GCAATTCATCGTCAGAGATT------..........................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................ACAAGTGCAATTCATCGTCAGA....................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
AAAA-------------------------TCG--CA------AGTAATACC-A---------------------------TA----CCCTTT--G-TGGGGAACGAAAAAAAAAAC---CACA--------------------------------AAAACAACAAGTGCAATTTATCGGCAAAAATT------GAAA--------------------------------------------TATAGTGCA-AATGCTTTGTAGCTGAACCTCAGA-----AAA---TA--------AGA--AAAT-ACATACATAC----GTAGTAAAGGAG-----ACGG---------------------------AAATAACACAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATG-----------------GCTGCATAGTGCAAATC--GCGGATGAA-C---------------------AA------------------TTGG---------ASizeHit CountTotal NormTotal
No Reads
droBia1
TAAG-------------------------TAA--CT------AATAATACC-AGC-------------------------TC----TC--------CC-----------CATCACC---AACA--------------------------------AAAACAAAAAGTGCAATTCATCGGCAGATAT-------AAAA--------------------------------------------TAACGTGCA-AATGCATTGTATCTGAAGCTAATA-----GAA---TA--------GGA--AAAT-ACATATA--------TATTGAAGAGG-----G-GGA----G----------AATAGTTCTTTAAATAACGCAAAAAA-AGAGCATATATTCATATTTGTATAGA--TATTATATAGC--------------TTCTGCATAGTGCAAAAC--GCGGATGAACG---------------------AA------------------TTCG---------ASizeHit CountTotal NormTotal
No Reads
droTak1
AAAG-------------------------TCC--CG------AATAATACCCAGT-------------------------TCTCCCCC--------CT--------AAGCAACAAC---AACA--------------------------------AAAACAACAAGTGCAATTCATCGGCAGAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCTCAGA-----AAA---TA--------GGA-AAAAT-ACATACATACAAACGTAGTGAAGAAGCA--GGCGGAGGTGAAACACA----CATAGTTCTTTAAATAACGCAAATCGGAGAGCATATATTCATATTTGTACAGA--TATTATATATC--------ATCATCGGCTGCATAGTGCAAATC--GCGTATGAGGG---------------------AA------------------TTCG---------ASizeHit CountTotal NormTotal
No Reads
droEle1
A-AG-------------------------TCC--CA------AATAATACC-AAT-------------------------CCCCG-CC----C---CT-----------CATCAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGACGGCAAAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCCCAGA-----AAA---TA--------GGA-AAAAT-AA------------GTAGTGAAGAAGAA--GGCAGAGG--A----------AATAGTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGT--------------GGCTGCATAGTGCAAATC--GCGGGTGAAGA---------------------AA------------------TTCA---------ASizeHit CountTotal NormTotal
No Reads
droRho1
A-AG-------------------------TCC--CA------AATAATACC-AGT-------------------------CC----CC----T---CT-----------CATCAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGTCGGCAGAAATT------GAAA--------------------------------------------TAAAGTGCA-AATGCATTGTAGCTGAACCTCAGA-----AAA---TA--------GGA-AAAAT-A--------A----GTAATGAAGAAG-----GCGGAGG--A----------AATAGTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGTGG------------CGCTGCATAGTGCAAATC--GCGGATGAGGG---------------------AA------------------TTCG---------TSizeHit CountTotal NormTotal
No Reads
droFic1
AAAG-------------------------TCC--CA------AATAATACC-AGT-------------------------CC----CC-CCT--C-C------------CCACAAC---AACA--------------------------------AAAACAACAAGTGCAATTCGTCGGCAGAAATT------AAAA--------------------------------------------TAAAGT-------GCATTGTAGCTGAACCTGAGA-----AAA---TA--------GAA-AAGAT-AC------------GTGGTGAAAAAG-----GCAGAGG--A----------AATATTTCTTTAAATAACGCAAATCG-AGAGCATATATTCATATTTGTACAGA--TATTATATAGT--------------GGCTGCATAGTGCAAATC--GCGGATGAAGC---------------------AG------------------TTCT---------CSizeHit CountTotal NormTotal
No Reads
droKik1
AAAT-------------------------TCCCCCA------AATAATACC-AATCAAAGATACACCCGACCCCAACCAATAC---CC--------C------------CCATACAC---ACA--------------------------------GAAACAACAAGTGCAATTCGTCGTCAGAAATCGAAATCGAAA--------------------------------------------TAAAGTGCAAAATGCATTGTAGCTGAACC--AGA-----AATAAATA--------AGA-GAAAT-A--------------------------------AGAGG--A----------AACAGTGCTTTAAATAACTCAAATCG-AGAGCGTATATTCATATTTGTACAGA--TATTATATAGTGGACGTCCAA-GTTAGCTGAGAATTCCCAGCAATTTGAAT---GA---------------------AA------------------TTCG---------GSizeHit CountTotal NormTotal
No Reads
droAna3
CAAG-------------------------CCCCACAACACAACATAATACCCTGT-------------------------TC----CC--------T------------C----------ACA------------------------------------AAACAAGTGCAATTCATCG-CAGAAACG--------AA--------------------------------------------TAAAGTGCA-AACGCCTTGTAGCTGAACCA--GA-----GATTATTCG-----A-AGA--AAGT-ACACACGTAC----G-AGTGAAGCG------GCAGA-G--A----------AATA-TTCTTTAAATAACGTAAATCG-AGAGCATATATTCATATTTGTACAGA--AATTGTGTAGT--------------TGCTGCATAGTGCAAA----------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................ACACGTAC----G-AGTGAAGCG------GCAGA-....................................................................................................................................................................................2311.001000001
...................................................................................................................................................................................................................................................................................................................CACACGTAC----G-AGTGAAGCG------GC........................................................................................................................................................................................2111.001010000
droBip1
AA-G-------------------------CCCCACAAT----TATAATACCCTGT-------------------------TC----CC----TCGCCG--------A--CAACATCGACAACA------------------------------------AAACAAGTGCAATTCATCG-CAGAAAT-------GAAA--------------------------------------------TAAAGTGCA-AACGCCTTGTAGCTGAACC--AGA-----GATTTAT-G-----A-AGA-AAAGT-ACACACGTATGTACGAAGTGAAAACGAATCGGCGGA-G--A----------AATAATTCTTTAAATAACGTAAATCG-AGAGCATATATTCATATTTGTACAGA--AATTATATAGC--------------CGCTGCACAGTGCAAAAC--A---GTGA--AAATAGAAGCGGGTCTCTAAACAACTCGCTCCACGTTTGACGCTCGACGCTCGACGSizeHit CountTotal NormTotal
No Reads
dp5
CAAAAAAGAAGAAAGAGAGAGAGAGAGAGCCC--C-------TATAATAAATAAA-------------------------TAGCCCCC----------------------------------------------------------------------ACAACAAGTGCAATTCGTA-------------------AGAAAGTGCAAAACAAAACAAAACAAAACAA---AACAAAACGAAACGAAACAA-AACGCATTGTAGCTGAGAACCCAACCACAAATTAGA-GGAGAGAAAGA--AAG-----------------------------------------------------TATATTTCTTAAAATAA-------------ATATATATTCATATTTGTATAGA--TATTTTATGGC--------AA-AGTGGCTGCAAAGTGCAAAC---------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................ACGAAACAA-AACGCATTGTAGC...................................................................................................................................................................................................................................................................2212.0020000000002
....................................................AAA-------------------------TAGCCCCC----------------------------------------------------------------------ACAACAAGTGC..................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............AGAGAGAGAGAGAGCCC--C-------TAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................................................................................................................................................ATTAGA-GGAGAGAAAGA--AAG-----------------------------------------------------T.....................................................................................................................................................................2111.0010000100000
......AGAAGAAAGAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710100000000
............................................................................................................................................................................................................................AAAACAA---AACAAAACGAAACG.......................................................................................................................................................................................................................................................................................2180.1310100000000
droPer2
CAAAAAAGAAAAAAAAGAG--AGAGAGAGCCC--C-------TATAATAAATAAA-------------------------TAGCCCCC----------------------------------------------------------------------ACAACAAGTGCAATTCG-------------------AAAGAAAGTGCA----------AAACAAAACAA---AACAAAACGAAACGAAACAA-AACGCATTGTAGCTGAGAACCAAACCACAAATTAGA-GGAAAGA-AGA--AAG-----------------------------------------------------TATATTTCTTAAAATAAA-----TAT----ATGTATATTCATATTTGTATAGA--TATTATATAGC--------AA-AGTGGCTGCAAAGTGCAAAC---------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................ATTGTAGCTGAGAACCAAACCACAAAT................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................AACAAGTGCAATTCG-------------------AAA......................................................................................................................................................................................................................................................................................................................................1811.001000010
..............................................................................................................................................................................................................................................................................................................AG-----------------------------------------------------TATATTTCTTAAAATAAA-----...............................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGC--------AA-AGTGGCTGCAAAGTGC.........................................................................2511.001010000
.............................................................................................................................................................................................................................................................CGCATTGTAGCTGAGAACCAAACC......................................................................................................................................................................................................................................................2411.001100000
droWil2
AAAATAAAAGCTTAAAAAT--CCCTTGCGCCC--CC------AGTTGTACC-CCC-------------------------TC----CC----C---CT-----------CT-----------------------------------------------TCAACAAGTGCAATTTAAAT---------------AAAA----CAAAA----------AAATTAAACAA---AAC---ACGCAAAAAGTGCA-AATGCATTGTAGCTGAACCA-----------------------------------------------------------------------------------------------------------------AGAGAAAAAATTAATATCTCAA---AAAT------------------------------AAAATACAAAA---------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................ATTGTAGCTGAACCA-----------------------------------------------------------------------------------------------------------------AGAGAA.....................................................................................................................................2112.00220000
droVir3
CAAAAAAAAAAAAA--------------------------------ATA--------------------------------A----AA--------A------------TAAAAATTGT--TAAACACAAGTGCAATTTAAACAAAATATATTTA----------------CGCATAGAGAGAAACC------AA----------------------------CCACAACAA---------CAAAGTGCA-AATGCATTGTAGCTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CAAA-------------------------ACA--AA------ATAAATACA-AAT-------------------------TG----TT----------------------------------A-----------------------------------AACACAAGTGCAATTGA-----AAAAATA------TATA-------------------TATTTAGATAA---AA---------CAAAGTGCA-AATGCAGTGTAGCTGAAAAAAAGA-----AAA-------------AGAAAACATTCT------------GACGTG--------------------CAACAGTTTTATA----TATT-----TATACATATAT----ATATATATATATATTTATATATA--TG-TATATG------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 08:50 PM