ID:

dsi_21440

 Coordinate:

3r:24334114-24334263 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.2 -11.0 -10.8

Flybase annnotation

CDS [3r_24334011_24334113_+]; exon [3r_24333810_24334113_+]; intron [3r_24334114_24334578_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGTGATTACATCAATTCGAAGTTCAAACCACATATGTGGGATCGAAATTCTGATGTATGTACATCTAGTTCCCAGTGGCTGATCCTTTGCCATGACCAGTTTTACAATAGTTCTCCTTTTGCATTTGTCCAAATTAATCTTCTTTGACCTAGTGCAACATTATCTCATTCAAACTTTTCTGTGATAAAAATAGGTCT
**********************************************************************************........(((((((..((((((((((....))))).)).....)))...))))).)).************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 O002
Head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902009
testis
............GTTCTGCGGCTGGTACGACGCCAACCT................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0
.CAGAAGAATCAGTTCTGCGGC.................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAAATTAATCTTCTTTGACCT............................................... 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
..AGAAGAATCAGTTCTGCGGC.................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................ACGCCAACCTCAGCGAAAA.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................GCGGCTGGTACGACGCCAACCTC.................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................ACATATGTGGGATCGAAATTCTGAT............................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................ACGACGCCAACCTCAGCGAAAA.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......GAATCAGTTCTGCGGCTGGG................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....AGAATCAGTTCTGCGGCC................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................GTACGACGCCAACCTCAGCGA............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................TCCCAGTGACTGATCCCTT............................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..AGAAGAATCAGTTCTGCGGCT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................GTTCCCAGTGGCTGATCCTTT............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................TGCGGCTGGTACGACGCCAACC.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TCTTATTTGACGTAGTGGAACA...................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TATTTGACGTAGTGCAAC....................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................ATCCCAGTGACTGATCCCTT............................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................ATATAGTTCCCAGTGG....................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.....ATAATCAGTTCTGCGGCTGAC................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................ATCCCAGTGACTGATCC................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................ATCCCAGTGACTGATCCCT.............................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................TCCCGTGGCTGATCCTTTA............................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTCTTCTTAGTCAAGACGCCGACCATGCTGCGGTTGGAGTCGCTTTTCCCACTCACTAATGTAGTTAAGCTTCAAGTTTGGTGTATACACCCTAGCTTTAAGACTACATACATGTAGATCAAGGGTCACCGACTAGGAAACGGTACTGGTCAAAATGTTATCAAGAGGAAAACGTAAACAGGTTTAATTAGAAGAAACTGGATCACGTTGTAATAGAGTAAGTTTGAAAAGACACTATTTTTATCCAGA
*************************************************************************************************************........(((((((..((((((((((....))))).)).....)))...))))).)).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................TAGTAAAGCTTCAAATTTGG........................................................................................................................................................................ 20 2 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
...................................................................AAGCTTCAAATTTGG........................................................................................................................................................................ 15 1 12 2.50 30 30 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GATCACGTTGTAATAGAGTAA............................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................TAGTAAAGCTTCAAATTTGGC....................................................................................................................................................................... 21 3 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0
..............................................................TAGTAAAGCTTCAAATTTG......................................................................................................................................................................... 19 2 5 1.40 7 7 0 0 0 0 0 0 0 0 0 0
................................................................GTAAAGCTTCAAATTTGG........................................................................................................................................................................ 18 2 8 1.25 10 6 0 0 0 0 0 4 0 0 0 0
................................................................GTTAAGCTTCAAGTTTGGTGT..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................AGTAAGTATGGAAAGAGACTATTT......... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................AGCTTTAAGACTACATACA......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................TATACACCCTAGCTTTAAGAC................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACGGTACTGGTCAAAATGTTAT........................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................AGGAAACGGTACCAGTCAAAATGT........................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTAAGTTTGAAAAGACACTA............ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TAGGGAACGGTACTGGTCAAA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................TGTAGTTAAGCCTTAAGTTTG......................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................AGCTTCAAGTTTGGTATGT................................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................ACAGTCACCGACTAGGCAACG........................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................AGCTTCAAATTTGGTG...................................................................................................................................................................... 16 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAGTCACCGACTAGGCAACG........................................................................................................... 20 3 8 0.50 4 0 1 0 0 0 3 0 0 0 0 0
..............................................................................................................................................GGTACTCGGCAAAATGTTA......................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................TAGTTAAGTTTCAAGTTTG......................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................TAGTTAAGCTTCAAATTT.......................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AGAGTCAGGGTCACCGACTAG................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................AAGCTTCAAATTTGGT....................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TCAGCTTGAAGTTTGGTCTA.................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................TTGTAAAGCTTCAAATTTGG........................................................................................................................................................................ 20 3 18 0.17 3 3 0 0 0 0 0 0 0 0 0 0
....................................................................AGCTTCAAATTTGGAGT..................................................................................................................................................................... 17 2 19 0.16 3 3 0 0 0 0 0 0 0 0 0 0
....................................................................AGCTTCAAATTTGGGGTA.................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGTAAAGCTTCAAGTTTAG........................................................................................................................................................................ 19 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................AGCTTCAAGTTTGGTATGC................................................................................................................................................................... 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................TTGTAAAGCTTCAAATTTGGT....................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................AGCTTCAAGTTTGGC....................................................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CAGGGATGTAGATCAAGGG............................................................................................................................ 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGAGTAAGTCTGAAA.................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................AGCTTCAAATTTGGGGT..................................................................................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCTTCAAATTTGGTGTG.................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCTTTAGGACTAC.............................................................................................................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................AGCTTCAAATTTGGCGT..................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................AGCTTCAAATTTGGT....................................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGTAAAGCTTCAAATTTG......................................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................TGTAAAGCTTCAAGTTTG......................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................CCCTAGCTTTGCGACT................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24334064-24334313 + dsi_21440 CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TCGAAGTTCAAACCACATAT-----------------------------------GTGGGATCGAAATTCTGAT---------------GTATGTACATCTAGTTCCC-----------AGTGGCTGATCCTTTGCCATGACCAGTT------------------------------------TT-ACAATAGTTCTCC-------TTTT-------------------------------GCATTTGTCCAAATTAATC-----------------TTCTTTGACCTAGTGCAACATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------
droSec2 scaffold_4:3838790-3839039 + CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TCGGAATTCAAACCACATAT-----------------------------------GTGGGATCAAAATTCTGAT---------------GTATGTACATCTAGTTCCC-----------AGTGGATGATCCTTTGCCATGGTCAGAT------------------------------------TT-ACAATAGTTTTCC-------TTTT-------------------------------GCATTTATCCAAATTAATC-----------------AGCTTTGACCTAGTGCAAGATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------
dm3 chr3R:24974225-24974469 + CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TTGAAATTTAAACCTCATAT-----------------------------------GTGGGATTAAAAATCTGAT-------------------GTACATCTAGTTTCC-----------AATCGATGATCCTTTGCTTTGATCAGTT------------------------------------TC-ACAATAGTATTCC-------TTTT--------------------------------CATTTACCCAAATTAATC-----------------TTCATTGACCTAGTGCAACATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------
droEre2 scaffold_4820:3057274-3057543 - CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------CCGAAATGCATGCT----AT-----------------------------------CTGGGGTCCAAGTGCTCAGGCATACATATATTGG---TGCACGTCTGGTTCTC-----------TTTGGAGGATCCTTTGCTTGGAGCAGAT------------------------------------C-----ACAGTTCTCC-------TTCCTAT-----------------GAAACTA----GCTTGTATCCTATTGTGGG-----------------TTCTTTGACCTAGTGCAACATTATCGCATT------TGAA-AGCAAACTTTTCTGTGATAA----AAATAAGTTT--------
droYak3 3R:21523818-21524084 - CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAGAAGGGTGAGT--GATTA-------CATCAAT----------------CCGAAAATCCAGCT----AT-----------------------------------CTGGAGTCCAAATGTAAAT---------------GTACATGC-TTGGGTTCTC-----------AATGGAGGATCCCTTGCTTGGATCAGAT------------------------------------GC-ACAATAGTTCTCC-------TTCCTTT-----------------GAAACGA----TTTTGTATCCTATTGCATC-----------------TTCTCTGACCTAGTGCAGCATTATCTCATTCGCATTCGAA-AGCAAACTTGTCTGTGATAA----AAATAGGTTT--------
droEug1 scf7180000409787:601572-601845 - CCAGAAGAATCAATTCTGCGGATGGTACGACGCCAATCTCAGCGAAAAGGGTAAGG-CGATTA-------CATCAAT----GCAGTCCCACTTCCGCAATTTATACT----AT-----------------------------------TTTTGGTCAGAAGTCTTAAAT--ACGCATATTTA---TGTATGTC-------------------------------------------------CGACTTT---GGACAATAATAGCAATTATCAGTTTA-ACGGACGCTTT-------TTTATCATT-----------------GAAATATCCTTACCTTAATCCAATTTAA----------------------TTTGACCTATTGT----TGATTTCATA------AAAA-CGCAAAGTTTCCTGTGATA-----AAATATTTTT--------
droBia1 scf7180000302136:3169997-3170275 - CCAGAAGAATCAGTTTTGCGGATGGTACGACGCCAATCTCAGCGAAAAAGGTGAGG-TGATTA-------CATCAAA---CACAGACCACCTTCCGTAATTCATGCT----AT-----------------------------------TTTCGGTAAAAACTCTTAAAAAT-C---------ATATGTTC--CTTGACCCT-----------TGTTGAAGGTCTTCTGTATTTCTC-------------------------------------------------------CATTTTCTTATCATTTTTTTAAAC--TTTCCCCAAATATCT------TT-AAAAACTCCAGT---------------TTTTTTTTTAACTAGAACCATAAAATCTTGA----------A-AAAAAACTACTTGGTGTTGT---AAATTAGTTTT--------
droTak1 scf7180000415310:228800-229080 + TCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAATCTCTCGGAGAAGGGTAAGG-CGATTACATATTACATCAAA----AATGTCGACCTTCCGTAATGTATACT----AT-----------------------------------CTGCAGTCAAAAGTCTAGT---------------GTATCT--------TTCTC-----------ATTG------------------------TAGGACATA---CATACATAAGTA--TTTTTCGGCTTA-GCGGAAATGTT-------CTTATCATTTTAATCAACCGTTATTTGAAATTTCTT-----TA-AAAAAATTTAAT-----------------TTGTTTGACCTAAGACAATATTTTATTTTTAAATTT----------------------TAA----AAAATCATCT--------
droEle1 scf7180000491280:1155076-1155296 + CCAGAAGAATCTGTTCTGTGGATGGTACGACGCCAATCTCAGCGAGAAAGGTGAGC-TGATTA-------CATCAAT---TACAGTCCCACTTCTGTAATTTGTACT----AT-----------------------------------CTTTGGTGAAAAATGTT------------------------------------GCTCCAATGTG----------------------------AAGAACGTA---CAAATC--------TCAGCATCTTTA-TCGAAAACGTT-------CTTATCAAAAATATTAC-----------------------------------------------------------------------------AAT----TT-------------TGAAATTCTCTTTAA-AA----AAATTGTTTTGGCATATA
droRho1 scf7180000779516:40937-41213 - CCAGAAGAATCAGTTCTGCGGATGGTACGACGCCAATCTTAGCGAAAAAGGTGAGG-TGATTA-------CATCAAA---AACAGTCCCAATTCCGTAATTCGAACT----AT-----------------------------------TTTTGTC---------------------------------------------------------CTTG------------------------CACCAAAAA---GGACCATAACAACTTCTTAAAGTTTA-ACGAAAGTTTT-------CTTATCAAAAATATTAAT--ATATCTTGAATTTCT------TA-AACAAATTAAAT-----------------TTTGTTGACCTAGTACAATCACATCTTAATAGGTCATAAAAACCTGACTTTTCTAATATATGGATGTATATATTT--------
droFic1 scf7180000453776:268897-268963 + TCAGAAGAATCAGTTCTGCGGATGGTTCGACGCCAATCTCAGCGAGAAAGGTAAGT--GATTA-------CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302466:507402-507467 - TCAGAAGAATCAATTCTGCGGCTGGTTCGATGCCAATCTCAGCGAGAAAGGTGATT---ATTA-------CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:4033094-4033188 + CCAGAAGAATCAGTTTTGCGGATGGTTCGACGCCAATCTCAGCGAGAAGGGTGAGTAAGATTA-------CATCAAC---CACAGTCCGAATTCCTTAA-------------------------------------------------GCAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396640:881272-881341 + CCAAAAGAATCAGTTTTGCGGATGGTTCGACGCTAATCTCAGCGAGAAGGGTGAGT-AGATTA-------CATCAAC----------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:13868876-13868953 - TCTGGAGAACAAATTCTGCGGCTGGCACGATGCGCCACTCACTGAAAACGGTAATT--GAA---------CTCAGATTCGAACAAA-------------------C-------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:6575106-6575183 + TCTGGAGAACAAATTCTGCGGCTGGCACGATGCGCCACTCACTGAAAACGGTAATT--GAA---------CTCAGATTCGAACAAA-------------------C-------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:5498554-5498612 + TCAGAAGAATCAATTCTGCGGCTGGTTCGATGCCAATCTCAGTGACAAGGGTCAGT--AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:2240228-2240283 + TCAGAAAAATCAATTCTGTGGCTGGTTTGATGCCAATCTCAGCGAAAAGGGTAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:26070008-26070247 - TCTGAAGAATCTGTTTTGCGGCTGGCACGATGCGCCGCTCAGCGCGGGTGGTAAGC--GTA---------CAATAGTGATAACAGT-------------------A-------CATTTGTTATTATGCTCTTATCAAAGAGTATTATG-----------------------------------------------------ATTTTATTATA----------------------------AAGGACGTAACACGATGT--------ATAGAATAATTGTCAAAATATACTCT-------TTTT--------------------------------TATCTACACATATTATACATATTTCATAAATTT--TTCATTATTT-----------------ATA-------------TTAATTAATATATTATTA----ATA----TTG--------
droGri2 scaffold_14624:3177067-3177120 + TCAGAAAAATCAATTCTGCGGCTGGTACGACGCCAATCTGAGTGACAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TCGAAGTTCAAACCACATAT-----------------------------------GTGGGATCGAAATTCTGAT---------------GTATGTACATCTAGTTCCC-----------AGTGGCTGATCCTTTGCCATGACCAGTT------------------------------------TT-ACAATAGTTCTCC-------TTTT-------------------------------GCATTTGTCCAAATTAATC-----------------TTCTTTGACCTAGTGCAACATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............GTTCTGCGGCTGGTACGACGCCAACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200010010000000000
.CAGAAGAATCAGTTCTGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CAAATTAATC-----------------TTCTTTGACCT........................................................................2112.00201000100000000000
..AGAAGAATCAGTTCTGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............................ACGCCAACCTCAGCGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.................GCGGCTGGTACGACGCCAACCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000000000
...........................................................................................................ACATAT-----------------------------------GTGGGATCGAAATTCTGAT---------------...............................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................ACGACGCCAACCTCAGCGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
......GAATCAGTTCTGCGGCTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....AGAATCAGTTCTGCGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
........................GTACGACGCCAACCTCAGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..AGAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................................................................................GTTCCC-----------AGTGGCTGATCCTTT..................................................................................................................................................................................................................................2111.00100010000000000000
................TGCGGCTGGTACGACGCCAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
droSec2
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TCGGAATTCAAACCACATAT-----------------------------------GTGGGATCAAAATTCTGAT---------------GTATGTACATCTAGTTCCC-----------AGTGGATGATCCTTTGCCATGGTCAGAT------------------------------------TT-ACAATAGTTTTCC-------TTTT-------------------------------GCATTTATCCAAATTAATC-----------------AGCTTTGACCTAGTGCAAGATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........ATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0031020
........ATCAGTTCTGCGGCTGGTACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.......................................CAGCGAAAAGGGTGAGT--GATTA-------CA.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.............TTCTGCGGCTGGTACGACGCCAACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................................................................................................................................................T---------------GTATGTACATCTAGTTCCC-----------.................................................................................................................................................................................................................................................2011.0011000
dm3
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------TTGAAATTTAAACCTCATAT-----------------------------------GTGGGATTAAAAATCTGAT-------------------GTACATCTAGTTTCC-----------AATCGATGATCCTTTGCTTTGATCAGTT------------------------------------TC-ACAATAGTATTCC-------TTTT--------------------------------CATTTACCCAAATTAATC-----------------TTCATTGACCTAGTGCAACATTATCTCATT-------------CAAACTTTTCTGTGATAA----AAATAGGTCT--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................ATC-----------------TTCATTGACCTAGTGC...................................................................1916.0060000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTTCTGCGGCTGGTACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000300000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTGCGGCTGGTACGACGCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
..AGAAGAATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACGACGCCAACCTCAGCGAAAAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTACGACGCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATCAGTTCTGCGGCTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAGAATCAGTTCTGCGGCTGGTACGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGAATCAGTTCTGCGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000
.........TCAGTTCTGCGGCTGGTACGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATCAGTTCTGCGGCTGGTACGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGAGT--GATTA-------CATCAAT----------------TTGA....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................GCGGCTGGTACGACGCCAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACGACGCCAACCTCAGCGAAAAGGGTC................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGTTCTGCGGCTGGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGTTCTGCGGCTGGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTTCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CCAACCTCAGCGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............TCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATCAGTTCTGCGGCTGGTACGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCCAACCTCAGCGAAAAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.CAGAAGAATCAGTTCTGCGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTTCTGCGGCTGGTACGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ATCCTTTGCTTTGATCAGTT------------------------------------TC-..............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTTCTGCGGCTGGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTCAGCGAAAAGGGTGAGT--G..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................ACCTCAGCGAAAAGGGTGAGT--GAT........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GTTTCC-----------AATCGATGATCCTTTGCTTTGA...........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTACGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............TCTGCGGCTGGTACGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
............GTTCTGCGGCTGGTACGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGAATCAGTTCTGCGGCTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......AATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GAAGAATCAGTTCTGCGGCTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ATCCTTTGCTTTGATCAGTT------------------------------------T................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTCAGCGAAAAGGGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CGATGATCCTTTGCTTTGAT..........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ACGCCAACCTCAGCGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GAAGAATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................CGACGCCAACCTCAGCGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGTTCTGCGGCTGGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TCGATGATCCTTTGCTTTGAT..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................CGCCAACCTCAGCGAAAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATCAGTTCTGCGGCTGGTACGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTTCTGCGGCTGGTACGACGCCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ATC-----------------TTCATTGACCTAGTGCA..................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTTCTGCGGCTGGTACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTTCTGCGGCTGGTACGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........TCAGTTCTGCGGCTGGTACGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCCAACCTCAGCGAAAAGGGTC................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGTACGACGCCAACCTCAGCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTTCTGCGGCTGGTACGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........AGTTCTGCGGCTGGTACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TCC-----------AATCGATGATCCTTTGCT...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGTTCTGCGGCTGGTACGACGCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGAATCAGTTCTGCGGCTGGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGTTCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droEre2
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAAAAGGGTGAGT--GATTA-------CATCAAT----------------CCGAAATGCATGCT----AT-----------------------------------CTGGGGTCCAAGTGCTCAGGCATACATATATTGG---TGCACGTCTGGTTCTC-----------TTTGGAGGATCCTTTGCTTGGAGCAGAT------------------------------------C-----ACAGTTCTCC-------TTCCTAT-----------------GAAACTA----GCTTGTATCCTATTGTGGG-----------------TTCTTTGACCTAGTGCAACATTATCGCATT------TGAA-AGCAAACTTTTCTGTGATAA----AAATAAGTTT--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..AGAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000100
........................GTACGACGCCAACCTCAGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...GAAGAATCAGTTCTGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
..............................CGCCAACCTCAGCGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.....AGAATCAGTTCTGCGGCTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................GTACGACGCCAACCTCAGCGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
..........................ACGACGCCAACCTCAGCGAAAAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................GCGGCTGGTACGACGCCAACCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...............................GCCAACCTCAGCGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............TCTGCGGCTGGTACGACGCCAACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
............GTTCTGCGGCTGGTACGACGCCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.......AATCAGTTCTGCGGCTGGTACGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........................GTACGACGCCAACCTCAGCGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...............................................................................................GAAATGCATGCT----AT-----------------------------------CTGGGGT..........................................................................................................................................................................................................................................................................................................2111.0010000100
.........TCAGTTCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
droYak3
CCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCTCAGCGAGAAGGGTGAGT--GATTA-------CATCAAT----------------CCGAAAATCCAGCT----AT-----------------------------------CTGGAGTCCAAATGTAAAT---------------GTACATGC-TTGGGTTCTC-----------AATGGAGGATCCCTTGCTTGGATCAGAT------------------------------------GC-ACAATAGTTCTCC-------TTCCTTT-----------------GAAACGA----TTTTGTATCCTATTGCATC-----------------TTCTCTGACCTAGTGCAGCATTATCTCATTCGCATTCGAA-AGCAAACTTGTCTGTGATAA----AAATAGGTTT--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................CGACGCCAACCTCAGCGAGAAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................2518.00800000000008
...GAAGAATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300100020000
..........................ACGACGCCAACCTCAGCGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000
...GAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100010000
..............TCTGCGGCTGGTACGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201100000000
........ATCAGTTCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000
.......AATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
............GTTCTGCGGCTGGTACGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........AGTTCTGCGGCTGGTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
....AAGAATCAGTTCTGCGGCTGGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..........CAGTTCTGCGGCTGGTACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
....................GCTGGTACGACGCCAACCTCA............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....AGAATCAGTTCTGCGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
....................................................................................................................................................................AAT---------------GTACATGC-TTGGGTTCTC-----------.................................................................................................................................................................................................................................................2111.00101000000000
.......................GGTACGACGCCAACCTCAGCGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.CAGAAGAATCAGTTCTGCGGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................CGCCAACCTCAGCGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................GTACGACGCCAACCTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.CAGAAGAATCAGTTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................ACGACGCCAACCTCAGCGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEug1
CCAGAAGAATCAATTCTGCGGATGGTACGACGCCAATCTCAGCGAAAAGGGTAAGG-CGATTA-------CATCAAT----GCAGTCCCACTTCCGCAATTTATACT----AT-----------------------------------TTTTGGTCAGAAGTCTTAAAT--ACGCATATTTA---TGTATGTC-------------------------------------------------CGACTTT---GGACAATAATAGCAATTATCAGTTTA-ACGGACGCTTT-------TTTATCATT-----------------GAAATATCCTTACCTTAATCCAATTTAA----------------------TTTGACCTATTGT----TGATTTCATA------AAAA-CGCAAAGTTTCCTGTGATA-----AAATATTTTT--------SizeHit CountTotal NormTotal
No Reads
droBia1
CCAGAAGAATCAGTTTTGCGGATGGTACGACGCCAATCTCAGCGAAAAAGGTGAGG-TGATTA-------CATCAAA---CACAGACCACCTTCCGTAATTCATGCT----AT-----------------------------------TTTCGGTAAAAACTCTTAAAAAT-C---------ATATGTTC--CTTGACCCT-----------TGTTGAAGGTCTTCTGTATTTCTC-------------------------------------------------------CATTTTCTTATCATTTTTTTAAAC--TTTCCCCAAATATCT------TT-AAAAACTCCAGT---------------TTTTTTTTTAACTAGAACCATAAAATCTTGA----------A-AAAAAACTACTTGGTGTTGT---AAATTAGTTTT--------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAATCTCTCGGAGAAGGGTAAGG-CGATTACATATTACATCAAA----AATGTCGACCTTCCGTAATGTATACT----AT-----------------------------------CTGCAGTCAAAAGTCTAGT---------------GTATCT--------TTCTC-----------ATTG------------------------TAGGACATA---CATACATAAGTA--TTTTTCGGCTTA-GCGGAAATGTT-------CTTATCATTTTAATCAACCGTTATTTGAAATTTCTT-----TA-AAAAAATTTAAT-----------------TTGTTTGACCTAAGACAATATTTTATTTTTAAATTT----------------------TAA----AAAATCATCT--------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAGAAGAATCTGTTCTGTGGATGGTACGACGCCAATCTCAGCGAGAAAGGTGAGC-TGATTA-------CATCAAT---TACAGTCCCACTTCTGTAATTTGTACT----AT-----------------------------------CTTTGGTGAAAAATGTT------------------------------------GCTCCAATGTG----------------------------AAGAACGTA---CAAATC--------TCAGCATCTTTA-TCGAAAACGTT-------CTTATCAAAAATATTAC-----------------------------------------------------------------------------AAT----TT-------------TGAAATTCTCTTTAA-AA----AAATTGTTTTGGCATATASizeHit CountTotal NormTotal
No Reads
droRho1
CCAGAAGAATCAGTTCTGCGGATGGTACGACGCCAATCTTAGCGAAAAAGGTGAGG-TGATTA-------CATCAAA---AACAGTCCCAATTCCGTAATTCGAACT----AT-----------------------------------TTTTGTC---------------------------------------------------------CTTG------------------------CACCAAAAA---GGACCATAACAACTTCTTAAAGTTTA-ACGAAAGTTTT-------CTTATCAAAAATATTAAT--ATATCTTGAATTTCT------TA-AACAAATTAAAT-----------------TTTGTTGACCTAGTACAATCACATCTTAATAGGTCATAAAAACCTGACTTTTCTAATATATGGATGTATATATTT--------SizeHit CountTotal NormTotal
No Reads
droFic1
TCAGAAGAATCAGTTCTGCGGATGGTTCGACGCCAATCTCAGCGAGAAAGGTAAGT--GATTA-------CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCAGAAGAATCAATTCTGCGGCTGGTTCGATGCCAATCTCAGCGAGAAAGGTGATT---ATTA-------CATCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCAGAAGAATCAGTTTTGCGGATGGTTCGACGCCAATCTCAGCGAGAAGGGTGAGTAAGATTA-------CATCAAC---CACAGTCCGAATTCCTTAA-------------------------------------------------GCAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GTTTTGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004100003
..............TTTGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.......AATCAGTTTTGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..........CAGTTTTGCGGATGGTTCGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000020
...........AGTTTTGCGGATGGTTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002100010
..AGAAGAATCAGTTTTGCGGATGGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000011
............GTTTTGCGGATGGTTCGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
......GAATCAGTTTTGCGGATGGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002110000
............GTTTTGCGGATGGTTCGACGCCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
............GTTTTGCGGATGGTTCGACGCCAATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........TCAGTTTTGCGGATGGTTCGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
....................GATGGTTCGACGCCAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
CCAGAAGAATCAGTTTTGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........CAGTTTTGCGGATGGTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............GTTTTGCGGATGGTTCGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......AATCAGTTTTGCGGATGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............................CGCCAATCTCAGCGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................TGGTTCGACGCCAATCTCAGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........ATCAGTTTTGCGGATGGTTCGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
......................................TCAGCGAGAAGGGTGAGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................TGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................CGACGCCAATCTCAGCGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................GGTTCGACGCCAATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................GCCAATCTCAGCGAGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..........CAGTTTTGCGGATGGTTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............TTTGCGGATGGTTCGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............TTGCGGATGGTTCGACGCCAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..............TTTGCGGATGGTTCGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................GCCAATCTCAGCGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............TTTTGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..AGAAGAATCAGTTTTGCGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..............TTTGCGGATGGTTCGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......AATCAGTTTTGCGGATGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.........TCAGTTTTGCGGATGGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...GAAGAATCAGTTTTGCGGATGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............TTTTGCGGATGGTTCGACGCCAATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..........CAGTTTTGCGGATGGTTCGACGCCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........ATCAGTTTTGCGGATGGTTCGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................GTTCGACGCCAATCTCAGCGAGAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...............TTGCGGATGGTTCGACGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................TGCGGATGGTTCGACGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........ATCAGTTTTGCGGATGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
.........TCAGTTTTGCGGATGGTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
CCAAAAGAATCAGTTTTGCGGATGGTTCGACGCTAATCTCAGCGAGAAGGGTGAGT-AGATTA-------CATCAAC----------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCTGGAGAACAAATTCTGCGGCTGGCACGATGCGCCACTCACTGAAAACGGTAATT--GAA---------CTCAGATTCGAACAAA-------------------C-------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTGGAGAACAAATTCTGCGGCTGGCACGATGCGCCACTCACTGAAAACGGTAATT--GAA---------CTCAGATTCGAACAAA-------------------C-------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCAGAAGAATCAATTCTGCGGCTGGTTCGATGCCAATCTCAGTGACAAGGGTCAGT--AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................GATGCCAATCTCAGTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................1815.00550000
...............................GCCAATCTCAGTGACAAGGGCA................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020
....AAGAATCAATTCTGCGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................CGATGCCAATCTCAGTGACAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...............CTGCGGCTGGTTCGATGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........CAATTCTGCGGCTGGTTCGATGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
........................GTTCGATGCCAATCTCAGTGACA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........ATCAATTCTGCGGCTGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................TGCCAATCTCAGTGACAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
....AAGAATCAATTCTGCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................AATCTCAGTGACAAGGGCA................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100100
droVir3
TCAGAAAAATCAATTCTGTGGCTGGTTTGATGCCAATCTCAGCGAAAAGGGTAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................CAATCTCAGCGAAAAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000020000000000000000000000000000000000000000000000000
............ATTCTGTGGCTGGTTTGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...GAAAAATCAATTCTGTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.............TTCTGTGGCTGGTTTGATGCCAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000100000000000000000000000
..........CAATTCTGTGGCTGGTTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........AATTCTGTGGCTGGTTTGATGCCAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......AATCAATTCTGTGGCTGGTTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............ATTCTGTGGCTGGTTTGATGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000100000
......................TGGTTTGATGCCAATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................GTTTGATGCCAATCTCAGCGAAAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...GAAAAATCAATTCTGTGGCTGGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........ATCAATTCTGTGGCTGGTTTGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
............ATTCTGTGGCTGGTTTGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TCTGAAGAATCTGTTTTGCGGCTGGCACGATGCGCCGCTCAGCGCGGGTGGTAAGC--GTA---------CAATAGTGATAACAGT-------------------A-------CATTTGTTATTATGCTCTTATCAAAGAGTATTATG-----------------------------------------------------ATTTTATTATA----------------------------AAGGACGTAACACGATGT--------ATAGAATAATTGTCAAAATATACTCT-------TTTT--------------------------------TATCTACACATATTATACATATTTCATAAATTT--TTCATTATTT-----------------ATA-------------TTAATTAATATATTATTA----ATA----TTG--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................GTAAGC--GTA---------CAATAGTGATAA...................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
TCAGAAAAATCAATTCTGCGGCTGGTACGACGCCAATCTGAGTGACAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........AATTCTGCGGCTGGTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110

Generated: 05/18/2015 at 06:35 PM