ID:

dsi_21434

 Coordinate:

4:44488-44686 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.0 -22.9 -22.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTCGTTATTCCAGCACTAATTTAAAAAAAATTCGATCAACGCAGACGTGGTACGGCATTTTAAATCTGATAACATTTTGAACCGGGAATTATTTTAGAGTACCATCCTTTATTTTGTGCCTGTTTTAATATAAATTAATTATGCGCCTGATGTAAAGTACAAAATGTGTAAAATGTGCCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAACATACATATATACATAACTTCCTGTCTTAGTATAAGTGTATGTCAGCCAAAAACAAATATATATGAGTGTTTATCGGCATTCG
******************************************************************...........(((((.((((........(((((.......))))).......)))).))))).............((((((((.((....(((((............)))))...)))))))))).................****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
..............................ATTCGATCAACGCAGACG........................................................................................................................................................................................................................................................... 18 0 1 18.00 18 16 2 0 0 0 0 0 0 0 0 0 0
..................................................................CTGATAACATTTTGAACCGGGA................................................................................................................................................................................................................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0
.................................................................TCTGATAACATTTTGAACCGGG.................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................GATAACATTTTGAAC........................................................................................................................................................................................................................ 15 0 2 1.50 3 0 0 0 2 1 0 0 0 0 0 0 0
......................................AACGCAGACGTGGTACG.................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................TTCGATCAACGCAGACGT.......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................TTCGATCAACGCAGACGTGGTA...................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................TCTGATAACATTTTGAACCGGGAAT................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................TCTGATAACATTTTGAACC....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................AAAATTCGATCAACGCAGA............................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................ATCAACGCAGACGTGGTACGGCA................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................CTGATAACATTTTGAAC........................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................GACGTGGTACGGCATTTTAAATCTGAT.................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................TTCGATCAACGCAGACGTG......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGATAACATTTTGAACC....................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................TACGGCATTTTAAATCTG...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................ATTCGATCAACGCAGACGT.......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................AATTCGATCAACGCAGACGT.......................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................AAAAAATTCGATCAACGCAGAC............................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................CGATCAACGCAGACGTGG........................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................CACCCAATTGTGCTTTGAT.......................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................TCGATCAACGCAGACGTG......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................AACGCAGACGTGGTACGG................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................TGGTACGGCATTTTAAATCTGATAACAT............................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATTTTAAATCTGATAACATTTTGAACC....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................AATTCGATCAACGCAGACGTG......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................AACGCAGACGTGGTACGGCATTTTAAATC........................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................CGGATAACATTTTGAACTG...................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................ATACCGGATAACATTTTGAAC........................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATGTTCCGTCGCGGTTG............................................................................................................. 17 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................TAAAATTCTGAACCGGGA................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0
.........TCCAGAACCGATTTAAAAAAA............................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................TACATTGTGAACCGGGAAGT................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................CGGATAACATTTTGAA......................................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TATACATGACTGTTTATC........ 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................ATAACATTTTGAACTG...................................................................................................................................................................................................................... 16 1 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0 0
.............................AATTCGATCAACGCG............................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................GATCAACTCAGAAGTGGCAC..................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................CGGATAACATTTTGAACT....................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTGGGCTTTGATGAATG..................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................GGATAACATTTTGAAC........................................................................................................................................................................................................................ 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................TTTAAATCGGATTACATTTT............................................................................................................................................................................................................................ 20 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................CGGATAACATTTTGAACTGT..................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................ATAACATTTTGAACCGCA.................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................ATACCGGATAACATTTTGAA......................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................CGGATAACATTTTGA.......................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................AATTTTAAGTCTGATAAC................................................................................................................................................................................................................................. 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TAACATTTTGAACTG...................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCAGCAATAAGGTCGTGATTAAATTTTTTTTAAGCTAGTTGCGTCTGCACCATGCCGTAAAATTTAGACTATTGTAAAACTTGGCCCTTAATAAAATCTCATGGTAGGAAATAAAACACGGACAAAATTATATTTAATTAATACGCGGACTACATTTCATGTTTTACACATTTTACACGGCAGCGCCCACGTGGGTTAACACGAAACTACTTATTTGTATGTATATATGTATTGAAGGACAGAATCATATTCACATACAGTCGGTTTTTGTTTATATATACTCACAAATAGCCGTAAGC
******************************************************************************************...........(((((.((((........(((((.......))))).......)))).))))).............((((((((.((....(((((............)))))...)))))))))).................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
......................................................................................CTTGGTAAAATGTCATGGTA................................................................................................................................................................................................. 20 3 4 0.75 3 3 0 0 0
.........................................................TAATATTTAGACTAGTGTA............................................................................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0
.......................................................................................................................................................ACGTTTCAGGTTTTAGACATT............................................................................................................................... 21 3 7 0.14 1 0 0 1 0
......................................................................................................................................................TACATTTCATGGTTTA..................................................................................................................................... 16 1 12 0.08 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:44438-44736 + dsi_21434 CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------ATTTTAAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATCCTTTATTTTGTGCCTGTTTTAATATAA-ATT-AA--TTATGCGCCTGATGTAAAGTACAAAATGTGTAAA---AT---G-TG-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAACATACATATATACA----------T-AAC---TTCCTGTCTTAGTATAAGTGTATGTC----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGCATTCG
droSec2 scaffold_52:37229-37527 + CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------ATTTTGAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATCCTTTATTTTGTGCCTGTTTCAATATAA-ATT-AA--TTATGCGCCTGATGTAAAGTACAAAATGTTTAAA---AT---G-TG-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAACATACATATATACA----------T-AAC---TTCCTGTCTTAGTATAAGTGTATGTC----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGCATTCG
dm3 chr4:89971-90285 + CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------GTTTTAAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATTCTTTGTTTTGTGCCTGTTTCAGTATAA-ATT-AA--TTATGCGCCTGATTTAAAGTACAAAATGTGTAAATATATCACCTTA-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAATATACATATATGCA---ACATATAT-AAC---TTCCTGTGTTAGTATAAGTGTATGTC----AGCCAAAAACAAATATATATATGAGTGTTTATCGGCATTCG
droEre2 scaffold_4512:1229717-1230031 - CGTCGTTATTCCAGCTCTAA-------TTT-AAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GCTCTGTAAACCGTTTTAAA-TCTGATAA-CTTTTTTAAGCGGGAA--TT-ATTTTATAG-TACCATTCCTTGTTTTGTGCCTGGTTTAATATAA-ATT-AA--TTATGCGCCTAATGTCAAGTGCAAAATGTGTATATATATCTGG-TGTCCGTCGCGGGTGCGCGCAATTGTGCTTTGATGAATAAATATACATATATGCA----------T-AAG---TTGCTGTCTTAGTATCAGTGTATGTA----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGTATTCG
droYak3 4:59852-60165 + CGTCGTTATTCCAGCTCTAA-------TTTTAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GCTCTGTAAACCGTTTTAAA-TCTGATAT-CTTTTTGAAGCGGGAA--TT-ATTTTATAG-TAATATTCTTTGTTTTGTGCCTGGTTCAATATAA-TTT-TA--TTATGCGCCTTATGTCAAGTACAAAATGTGTACATATATCA-GTTGCCCGACGCGGGTGCGCGCAATTGTGCTTTGATGAATAAATACATATA--TGCA----------T-AAC---CTGCTGTCTTCGTATAAGTGTATGTA----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGTATTCG
droEug1 scf7180000406964:37138-37430 + CGTCGTTGTTTCAGCTCTAA-ATGCTCTTT-GAAAAAATTT-------------GATCAACGCGGACGGGTTTACG---GTTCTTTAAG-CGT-TTAAA-TTGTAT---ATTATTTAAGTGGTAA------------------------------CGTGTCTGTTTGGAAAAAA-ATT--G--TTACGAGCCTGTTTCCAAGTACAAAAGGTGCAATTAAATCATATCGCCCGTTGTGGTTACGACAATTCGTGCTTTGATTAATAAATATTTTTA--CGTA----------TAAAC---TTGCTCCGTTTGTATAAGTGTATGTATGAAAATGACAAAGAAA----TGTATTCATGTTTATTGGTATTCG
droBia1 scf7180000302087:314446-314726 - ---------------------------TTT-AAAAAAATTTGATCAAT--------TCAACGCGGACGTGGGTACG---TTTCT--AGGGCGTTTTAAA-TTTGATAATCATTTTTGAGCGGTAACGAATA-TTAATAA-----ATACCTTATGTTGTGCCTGTTCGTATAAAA-ATGTAA--AATTTCGCCTGATCTTAAGTACAAAATACATAAATAAATTAAGTTG-CAGTCGTGGTTTCGACGAATTGTGCTTTGGTGAATAAATAT------------------------------TGCTGCATTAGTATAAGTGTATGTA----AATCACAAACAAA----TATATGAGTGTTTATCGGTATCCG
droTak1 scf7180000414546:12526-12799 - CAACACTGATTTGG-----------------------------TCACTGATTTCGATCAACGCGGACGTGGGTACGGCGGCTCTCTGGATCGT--TAAATTTTGAAAATATTATTTTAGCGGGA-CAAT-ATTTAATAG-----------------ATGCCTGTTCGTTAAGAA-ATG-AA--ATATGCGCCTGATACTCAGTACAAAATGTGTGAATAAATGATGTTG-CCATC----TTGCGACAAATTGTGCTTTGACGAATAAATAT------------------------------TGCTGTATTAGTATAAGTGTATGTA----AATCACAAACAAA----TATATGAGTGTGTATCGGTATCCG
droEle1 scf7180000490971:355966-356218 - ----------------------------------AAAAATT-------------GATCAGCGCGGACGTAGGTACG---GTTCTCTTAA------------------------TTGGAGCGGGAA---T-ACTTGATAAATACC------TATTTTGTGCCTGCTCGATTAAAT-ATT-AATGTTTTGCGCCTGATACTAAGTACAAAATGTGTAAATAAATGA---TA-ATGTCGTGGTTACGACAAA---TGCTTTGACGAAGAAATATTTATA--TGTA----------CAAAC---GTGCTGTGTCAGTATAAGTGTATGTA----AATCACAAAGAAA----TATGTGAGTG--TATCGGTATCTG
droRho1 scf7180000778598:19203-19511 - CACCACTACTAAGGGGCT--------CTTGAAAAAAAAATT-------------GATCAGCGCGGACGTGGGTACG---GCTCTTTAAACCGATTTAAA-TTTGATAATAATTTTAAAGCGGGAACATT-ACTTGATAA--AACA-----TATTTTGTAACTGCTCGATTAAAC-ATT-AATGTTATGCGCCTGATA-AAAGTACAAAATGTATAAATAAATT--GTTG-TCGTCGTGGTAGAGACAAATTGTGCTTTGACGAATAAATATTTACA--TGTA----------TAAAC---ATACTGTATAAGTGTAAGTGTATGTA----AATCACAAACGAA----TATATGAATTTTTATCGGTATCCG
droFic1 scf7180000454086:319308-319603 - CAAAGTTTGTCCAGCTCTAGGGTGCTCTTT-AAA-AAAATT-------------GATCAACGCGGACGTGA-GACG---GTTCTTTA---------AAA-TTTAAT---ATTTTTAAAACGGGCG--GT-TCTTAATAG-AAACA-----TATTTTGTGACTGTTATTT-AAAAATTA-AA--AAATGCGCCTGCTACCAAGTACAAAATGTGTAAATATG--GTATTG-CCGTAGTAGTTGCGACAAATTGTGCTTTAAAGAATAAATCGGAATA--TGTA----------TAAGT---ATGCAATATAAGTGTATGTGTATGTA----AATCA------AATA--TATATGAGTATTTATCGGTATCCG
droBip1 scf7180000394722:44800-44906 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGACAAGTATATATTTATATATGTACGTACCTATAC-ATACTAATGCAGTTGTAGTGTAGGTGTATGTA----AATCTAGGAT--A----TTTATGTATGTACCTCGGTAT-CG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------ATTTTAAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATCCTTTATTTTGTGCCTGTTTTAATATAA-ATT-AA--TTATGCGCCTGATGTAAAGTACAAAATGTGTAAA---AT---G-TG-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAACATACATATATACA----------T-AAC---TTCCTGTCTTAGTATAAGTGTATGTC----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGCATTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................ATTC-------------GATCAACGCAGACG...............................................................................................................................................................................................................................................................................................................18118.0018160200000000000000
.....................................................................................................CTGATAA-CATTTTGAACCGGGA.......................................................................................................................................................................................................................................................2212.00200100000010000000
....................................................................................................TCTGATAA-CATTTTGAACCGGG........................................................................................................................................................................................................................................................2212.00200200000000000000
.......................................................................................................GATAA-CATTTTGAAC............................................................................................................................................................................................................................................................1521.50300000021000000000
..........................................................AACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................1711.00100000000001000000
......................................TTC-------------GATCAACGCAGACGT..............................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................TTC-------------GATCAACGCAGACGTGG-TA.........................................................................................................................................................................................................................................................................................................2211.00100000010000000000
....................................................................................................TCTGATAA-CATTTTGAACCGGGAA--T...................................................................................................................................................................................................................................................2511.00100100000000000000
....................................................................................................TCTGATAA-CATTTTGAACC...........................................................................................................................................................................................................................................................1911.00100100000000000000
..................................AAAATTC-------------GATCAACGCAGA.................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.......................................................ATCAACGCAGACGTGG-TACG---GC----------A.......................................................................................................................................................................................................................................................................................2311.00100000000000010000
.....................................................................................................CTGATAA-CATTTTGAAC............................................................................................................................................................................................................................................................1711.00100000010000000000
................................................................GACGTGG-TACG---GC----------ATTTTAAA-TCTGAT.........................................................................................................................................................................................................................................................................2711.00100000000000010000
......................................TTC-------------GATCAACGCAGACGTG.............................................................................................................................................................................................................................................................................................................1911.00110000000000000000
........................................................................TACG---GC----------ATTTTAAA-TCTG...........................................................................................................................................................................................................................................................................1811.00100100000000000000
.....................................ATTC-------------GATCAACGCAGACGT..............................................................................................................................................................................................................................................................................................................1911.00100100000000000000
....................................AATTC-------------GATCAACGCAGACGT..............................................................................................................................................................................................................................................................................................................2011.00101000000000000000
................................AAAAAATTC-------------GATCAACGCAGAC................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
........................................C-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................1811.00100000000000100000
..................................................................................................................................................................................................................................................CACCCAATTGTGCTTTGAT..............................................................................................................1911.00101000000000000000
.......................................TC-------------GATCAACGCAGACGTG.............................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..........................................................AACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................................................................TGG-TACG---GC----------ATTTTAAA-TCTGATAA-CAT...................................................................................................................................................................................................................................................................2811.00100100000000000000
...........................................................................................ATTTTAAA-TCTGATAA-CATTTTGAACC...........................................................................................................................................................................................................................................................2711.00110000000000000000
....................................AATTC-------------GATCAACGCAGACGTG.............................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..........................................................AACGCAGACGTGG-TACG---GC----------ATTTTAAA-TC.............................................................................................................................................................................................................................................................................2911.00100010000000000000
....................................AATTC-------------GATCAACGCG...................................................................................................................................................................................................................................................................................................................1570.14100000000100000000
........................................................................................................ATAA-CATTTTGAACCGCA........................................................................................................................................................................................................................................................18100.10100000001000000000
droSec2
CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------ATTTTGAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATCCTTTATTTTGTGCCTGTTTCAATATAA-ATT-AA--TTATGCGCCTGATGTAAAGTACAAAATGTTTAAA---AT---G-TG-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAACATACATATATACA----------T-AAC---TTCCTGTCTTAGTATAAGTGTATGTC----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGCATTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................AACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................18119.001900415
..........................................................AACGCAGACGTGG-TACG---GC----------........................................................................................................................................................................................................................................................................................1915.0050113
.......................................................ATCAACGCAGACGTGG-TA.........................................................................................................................................................................................................................................................................................................1813.0031011
.......................................................ATCAACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................2113.0030012
............................................................CGCAGACGTGG-TACG---GC----------A.......................................................................................................................................................................................................................................................................................1813.0030030
..........................................................AACGCAGACGTGG-TACG---GC----------AT......................................................................................................................................................................................................................................................................................2113.0031101
.......................................................ATCAACGCAGACGTGG-TACG---GC----------........................................................................................................................................................................................................................................................................................2212.0020002
.....................................ATTC-------------GATCAACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................2612.0020101
...............................................................................GC----------ATTTTGAA-TCTGATAA-CATTTTGAA.............................................................................................................................................................................................................................................................2711.0011000
....................................................................................................................................................................TTCAATATAA-ATT-AA--TTATGCGCCTGA................................................................................................................................................................................2711.0011000
.......................................TC-------------GATCAACGCAGACGTGG-TACG---GC----------........................................................................................................................................................................................................................................................................................2511.0010001
.......................................TC-------------GATCAACGCAGACGTGG-TA.........................................................................................................................................................................................................................................................................................................2111.0010001
........................................................TCAACGCAGACGTGG-TACG---GC----------A.......................................................................................................................................................................................................................................................................................2211.0010100
.......................................TC-------------GATCAACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................2411.0011000
........................................................................TACG---GC----------ATTTTGAA-TCTGATAA-CA....................................................................................................................................................................................................................................................................2411.0010001
...................................AAATTC-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................2311.0011000
.........................................................................................................................................................................................................................................................................................................................ATAAGTGTATGTC----AGCCAAAAA................................2211.0010010
........................................C-------------GATCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................2211.0010100
........................................C-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................1811.0011000
.......................................TC-------------GATCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................2311.0011000
.................................AAAAATTC-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................2511.0010100
.....................................ATTC-------------GATCAACGCAGACG...............................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................GCAGACGTGG-TACG---GC----------ATTTTGAA-TCT............................................................................................................................................................................................................................................................................2711.0011000
...............................................................................................................................................................................................................................................................................................................CTGTCTTAGTATAAGTGTATGTC----AGC......................................2611.0010001
...........................................................................................................................AA--TT-ATTTTAGAG-TACCATC................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................................................TACAAAATGTTTAAA---AT---G-TG-CCGTCGCG.....................................................................................................................................2811.0010100
..........................................................AACGCAGACGTGG-TACG---GC----------ATTTTG..................................................................................................................................................................................................................................................................................2511.0010100
..........................................................AACGCAGACGTGG-TACG---GC----------ATT.....................................................................................................................................................................................................................................................................................2211.0010001
...........................................................ACGCAGACGTGG-TACG---GC----------A.......................................................................................................................................................................................................................................................................................1911.0010001
dm3
CGTCGTTATTCCAGCACTAA-------TTTAAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GC----------GTTTTAAA-TCTGATAA-CATTTTGAACCGGGAA--TT-ATTTTAGAG-TACCATTCTTTGTTTTGTGCCTGTTTCAGTATAA-ATT-AA--TTATGCGCCTGATTTAAAGTACAAAATGTGTAAATATATCACCTTA-CCGTCGCGGGTGCACCCAATTGTGCTTTGATGAATAAATATACATATATGCA---ACATATAT-AAC---TTCCTGTGTTAGTATAAGTGTATGTC----AGCCAAAAACAAATATATATATGAGTGTTTATCGGCATTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..........................................................................................................AA-CATTTTGAACCGGGAA--TT-ATTTT............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AATATATCACCTTA-CCGTCGCGG....................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TCAACGCAGACGTGG-TACG---GC----------A.......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................AAAAAAAATTC-------------GATCAACGCAGA.................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................................................................................................................................................................................ATGCGCCTGATTTAAAGTACAAAATG................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................ATCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................ATATATATATGAGTGTTTATCGGC.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................AAAAAATTC-------------GATCAACGCAGACG...............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
......................................TTC-------------GATCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................GGGAA--TT-ATTTTAGAG-TACCA..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AACCGGGAA--TT-ATTTTAGAG-TACCAA.................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................TTTGAACCGGGAA--TT-ATTTTAGAG-T......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAGACGTGG-TACG---GC----------GTT.....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................AAATTC-------------GATCAACGCAGACGTGG-TAC........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................ATTC-------------GATCAACGCAGACGTGG-TACG---GC----------........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................AATTC-------------GATCAACGCAGACGTGG-TA.........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AA-------TTTAAAAAAAATTC-------------GATCA........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................TTC-------------GATCAACGCAGACGTGG-TACG---GA----------TC......................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCTGTGTTAGTATAAGTGTATGTC----AGC......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................ATAA-CATTTTGAACCGGG........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................AATTC-------------GATCAACGCAGACGTGG-TAC........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GGAA--TT-ATTTTAGAG-TACCATTC...............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................ATTCTTTGTTTTGTGCCTGTT..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAAAAAAATTC-------------GATCAACGCAGACG...............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AA-------TTTAAAAAAAATTC-------------GAT..........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ATGCGCCTGATTTAAAGTACAAAATGT...............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ATATATGAGTGTTTATCGG......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................TGTATGTC----AGCCAAAAACAAAT...........................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TATCACCTTA-CCGTCGCGGGT..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATTC-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CTGTGTTAGTATAAGTGTATGT..............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................ATTC-------------GATCAACGCAGACGATC-...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CCTTA-CCGTCGCGGGTGCACC.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................AATATATCACCTTA-CCGTCGCGGG...................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................GATCAACGCAGACGTGG-TA.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................TACG---GC----------GTTTTAAA-TCTGATAA-CA....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................A-CATTTTGAACCGGGAA--TT-ATTTTA...........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................CGCCTGATTTAAAGTACAAAAT.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGTCGTTATTCCAGCTCTAA-------TTT-AAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GCTCTGTAAACCGTTTTAAA-TCTGATAA-CTTTTTTAAGCGGGAA--TT-ATTTTATAG-TACCATTCCTTGTTTTGTGCCTGGTTTAATATAA-ATT-AA--TTATGCGCCTAATGTCAAGTGCAAAATGTGTATATATATCTGG-TGTCCGTCGCGGGTGCGCGCAATTGTGCTTTGATGAATAAATATACATATATGCA----------T-AAG---TTGCTGTCTTAGTATCAGTGTATGTA----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGTATTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................CTGG-TGTCCGTCGCGGGTGCGCGCA...........................................................................................................................25138.003800000038
...............................................................AGACGTGG-TACG---GCTCTG..............................................................................................................................................................................................................................................................................................1815.0050000050
........................................................TCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................1912.0020000110
..........................................................AACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................1811.0010000100
............................................................CGCAGACGTGG-TACG---GCT.................................................................................................................................................................................................................................................................................................1811.0010000010
................................................................................................................................................................................................................ATGTGTATATATATCTGG-T...............................................................................................................................................1911.0010000010
..............................................................................................................................................................................................................................CTGG-TGTCCGTCGCGGGTGCGCGCT...........................................................................................................................2511.0010000001
................................................................................................................................................................................................TAATGTCAAGTGCAAAATGTGTATA..........................................................................................................................................................2511.0011000000
.......................................................ATCAACGCAGACGTGG-TACG---GCT.................................................................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................................................................................................................GCA----------T-AAG---TTGCTGTCTTAGTATCAGT....................................................2611.0010000010
...........................................................ACGCAGACGTGG-TACG---GC..................................................................................................................................................................................................................................................................................................1811.0010000010
....................................................................................................................................................................................A--TTATGCGCCTAATGTCAAGTGCA.....................................................................................................................................................................2411.0011000000
..........................................................AACGCAGACGTGG-TACG---GC..................................................................................................................................................................................................................................................................................................1911.0010000100
.......................................................ATCAACGCAGACGTGG-TACG---G...................................................................................................................................................................................................................................................................................................2111.0010000010
....................................................................................................................................................................................................................GTATATATATCTGG-TGTCCGTCGC......................................................................................................................................2411.0010100000
........................................C-------------GATCAACGCAGACGTGG-...........................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................................................A----------T-AAG---TTGCTGTCTTAGTATCAGT....................................................2411.0010000010
droYak3
CGTCGTTATTCCAGCTCTAA-------TTTTAAAAAAATTC-------------GATCAACGCAGACGTGG-TACG---GCTCTGTAAACCGTTTTAAA-TCTGATAT-CTTTTTGAAGCGGGAA--TT-ATTTTATAG-TAATATTCTTTGTTTTGTGCCTGGTTCAATATAA-TTT-TA--TTATGCGCCTTATGTCAAGTACAAAATGTGTACATATATCA-GTTGCCCGACGCGGGTGCGCGCAATTGTGCTTTGATGAATAAATACATATA--TGCA----------T-AAC---CTGCTGTCTTCGTATAAGTGTATGTA----AGCCAAAAACAAATA--TATATGAGTGTTTATCGGTATTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................AGACGTGG-TACG---GCTCTG..............................................................................................................................................................................................................................................................................................1812.00210000100000
.........................................................CAACGCAGACGTGG-TACG---GCTCTGT.............................................................................................................................................................................................................................................................................................2511.00110000000000
..........................................................AACGCAGACGTGG-TACG---GC..................................................................................................................................................................................................................................................................................................1911.00100100000000
............................TTTAAAAAAATTC-------------GATCAACGCAGACG...............................................................................................................................................................................................................................................................................................................2711.00110000000000
.....................................ATTC-------------GATCAACGCAGACGTGG-TACG---....................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................TA--TATATGAGTGTTTATCGGT.....2111.00100000010000
.......................................TC-------------GATCAACGCAGACGTGG-TACG---GC..................................................................................................................................................................................................................................................................................................2511.00100100000000
........................................................TCAACGCAGACGTGG-TACG---GCTCT...............................................................................................................................................................................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................GTTGCCCGACGCGGGTGCGCGC............................................................................................................................2211.00100000010000
.......................................................ATCAACGCAGACGTGG-TAC........................................................................................................................................................................................................................................................................................................1911.00100100000000
..................AA-------TTTTAAAAAAATTC-------------GATCAACGCAGAC................................................................................................................................................................................................................................................................................................................2911.00100100000000
.......................................................................................................................................................GTTTTGTGCCTGGTTCAAT.........................................................................................................................................................................................................1911.00101000000000
.............................................................................................................................................................................................................................................................................................................TGCTGTCTTCGTATAAGTGTATGTA----.........................................2511.00101000000000
droEug1
CGTCGTTGTTTCAGCTCTAA-ATGCTCTTT-GAAAAAATTT-------------GATCAACGCGGACGGGTTTACG---GTTCTTTAAG-CGT-TTAAA-TTGTAT---ATTATTTAAGTGGTAA------------------------------CGTGTCTGTTTGGAAAAAA-ATT--G--TTACGAGCCTGTTTCCAAGTACAAAAGGTGCAATTAAATCATATCGCCCGTTGTGGTTACGACAATTCGTGCTTTGATTAATAAATATTTTTA--CGTA----------TAAAC---TTGCTCCGTTTGTATAAGTGTATGTATGAAAATGACAAAGAAA----TGTATTCATGTTTATTGGTATTCGSizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------TTT-AAAAAAATTTGATCAAT--------TCAACGCGGACGTGGGTACG---TTTCT--AGGGCGTTTTAAA-TTTGATAATCATTTTTGAGCGGTAACGAATA-TTAATAA-----ATACCTTATGTTGTGCCTGTTCGTATAAAA-ATGTAA--AATTTCGCCTGATCTTAAGTACAAAATACATAAATAAATTAAGTTG-CAGTCGTGGTTTCGACGAATTGTGCTTTGGTGAATAAATAT------------------------------TGCTGCATTAGTATAAGTGTATGTA----AATCACAAACAAA----TATATGAGTGTTTATCGGTATCCGSizeHit CountTotal NormTotal
No Reads
droTak1
CAACACTGATTTGG-----------------------------TCACTGATTTCGATCAACGCGGACGTGGGTACGGCGGCTCTCTGGATCGT--TAAATTTTGAAAATATTATTTTAGCGGGA-CAAT-ATTTAATAG-----------------ATGCCTGTTCGTTAAGAA-ATG-AA--ATATGCGCCTGATACTCAGTACAAAATGTGTGAATAAATGATGTTG-CCATC----TTGCGACAAATTGTGCTTTGACGAATAAATAT------------------------------TGCTGTATTAGTATAAGTGTATGTA----AATCACAAACAAA----TATATGAGTGTGTATCGGTATCCGSizeHit CountTotal NormTotal
No Reads
droEle1
----------------------------------AAAAATT-------------GATCAGCGCGGACGTAGGTACG---GTTCTCTTAA------------------------TTGGAGCGGGAA---T-ACTTGATAAATACC------TATTTTGTGCCTGCTCGATTAAAT-ATT-AATGTTTTGCGCCTGATACTAAGTACAAAATGTGTAAATAAATGA---TA-ATGTCGTGGTTACGACAAA---TGCTTTGACGAAGAAATATTTATA--TGTA----------CAAAC---GTGCTGTGTCAGTATAAGTGTATGTA----AATCACAAAGAAA----TATGTGAGTG--TATCGGTATCTGSizeHit CountTotal NormTotal
No Reads
droRho1
CACCACTACTAAGGGGCT--------CTTGAAAAAAAAATT-------------GATCAGCGCGGACGTGGGTACG---GCTCTTTAAACCGATTTAAA-TTTGATAATAATTTTAAAGCGGGAACATT-ACTTGATAA--AACA-----TATTTTGTAACTGCTCGATTAAAC-ATT-AATGTTATGCGCCTGATA-AAAGTACAAAATGTATAAATAAATT--GTTG-TCGTCGTGGTAGAGACAAATTGTGCTTTGACGAATAAATATTTACA--TGTA----------TAAAC---ATACTGTATAAGTGTAAGTGTATGTA----AATCACAAACGAA----TATATGAATTTTTATCGGTATCCGSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAGTTTGTCCAGCTCTAGGGTGCTCTTT-AAA-AAAATT-------------GATCAACGCGGACGTGA-GACG---GTTCTTTA---------AAA-TTTAAT---ATTTTTAAAACGGGCG--GT-TCTTAATAG-AAACA-----TATTTTGTGACTGTTATTT-AAAAATTA-AA--AAATGCGCCTGCTACCAAGTACAAAATGTGTAAATATG--GTATTG-CCGTAGTAGTTGCGACAAATTGTGCTTTAAAGAATAAATCGGAATA--TGTA----------TAAGT---ATGCAATATAAGTGTATGTGTATGTA----AATCA------AATA--TATATGAGTATTTATCGGTATCCGSizeHit CountTotal NormTotal
No Reads
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGACAAGTATATATTTATATATGTACGTACCTATAC-ATACTAATGCAGTTGTAGTGTAGGTGTATGTA----AATCTAGGAT--A----TTTATGTATGTACCTCGGTAT-CGSizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 03:49 PM