ID:

dsi_21384

 Coordinate:

2l:18621487-18621636 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.0 -3.6 -3.6

Flybase annnotation

three_prime_UTR [2l_18621465_18621486_+]; CDS [2l_18621210_18621464_+]; Antisense to three_prime_UTR [2l_18621489_18621518_-]; exon [2l_18621194_18621486_+]; Antisense to CDS [2l_18621519_18622955_-]; Antisense to exon [2l_18621489_18622955_-]; intron [2l_18621487_18625589_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACCAAGCCCAGCACATCCTCCACCTAGGGTCTATCCTTGAGCAAGCAAGGTAAGTTTTCACATACAAATGTATATTATCGTTTACATGGGATAATCGTCCGCCTGGCTGTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACCAGGATTTCGCGATCCTCAGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTCCCGGCAACTTCCTCCAACATCGCCG
**************************************************************************************************************((...(((((((.......))))...............)))...))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
................................................................................................CTTCCGCCAGGCTGTTGTTGT..................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................CTAGGGTCTATCCTTGAGC............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................TTGTTGTTGTTCTGAAA........................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ATCCTCAGTTTGTTGTCGGTCA................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................TTGTTGTTCTGAAAACGAACT.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTCAAAACCGTCGACCAGGA.............................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................GCTGTCTCAAAATCGTCGACCG................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GCACATCCTCCACCTAGGGTC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........CAGCACATCCTCCACCTAGGG............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................GTCTATCCTTGAGCAAGCAACGGA..................................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................AATTGTCTCAAAACCG........................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0
................................................................................................CTTCCGCCAGGCTGTTGTTGTA.................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TTGTTGTTGTTCTGAAAAA......................................................................................................................... 19 1 5 0.40 2 0 1 1 0 0 0 0 0 0
.....................................TTGAGCAAGCAAGGG...................................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCACATATCGCCTGA............................ 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
...............................................................................................................TGTTGTTGTTCTGAAAAA......................................................................................................................... 18 1 7 0.14 1 0 1 0 0 0 0 0 0 0
...................................................................................................CCGCCAGGCTGTTGTTGTAGC.................................................................................................................................. 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0
............................................................................................................TATTGTTGTTGTTCTGAAAAA......................................................................................................................... 21 2 9 0.11 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CACGAGCTCATATCGACGG............................. 19 3 10 0.10 1 0 0 0 0 0 1 0 0 0
.......................CGTACGGTCTATCCTT................................................................................................................................................................................................................... 16 2 10 0.10 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................CAACTCCCTCCAAAATCGGC. 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................GCTCATATCGACGGAGT.......................... 17 2 13 0.08 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................CCTCGGTTTGGTATCGGTC.................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................AAAGGACTGTCTCAAA............................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................................................CCTTCCGCCAGGCTGTTGT........................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGTTGTAGTCGGTCCC................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
......................................................................................................................GTTATCAAAACGAACTGTTT................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

----------------------------------------------------######################################################################################################################################################################################################
TTGGTTCGGGTCGTGTAGGAGGTGGATCCCAGATAGGAACTCGTTCGTTCCATTCAAAAGTGTATGTTTACATATAATAGCAAATGTACCCTATTAGCAGGCGGACCGACAACAACAACAAGACTTTTGCTTGACAGAGTTTTGGCAGCTGGTCCTAAAGCGCTAGGAGTCAAACAACAGCCAGGGCGTCGGTGACGAGGGCGTGCCCGTGTATAGCGGCCTCAGGGCCGTTGAAGGAGGTTGTAGCGGC
**********************************************************************************************((...(((((((.......))))...............)))...))************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 M024
male body
...................AGGTGGATCCCAGATAGGAAC.................................................................................................................................................................................................................. 21 0 1 5.00 5 4 0 0 0 0 0 1 0 0 0
...................AGGTGGATCCCAGATAGGAACT................................................................................................................................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
ATGGTTCGGGTCGTGTAGGAGG.................................................................................................................................................................................................................................... 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0
.....TCGGGTCGTGTAGGAGGTGGA................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
.....................GTGGATCCCAGATAGGAACTC................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................AGGAGGTGGATCCCAGATAGGAACTC................................................................................................................................................................................................................ 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
................AGGAGGTGGATCCCAGATAGG..................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCAGGGCCGTTGAAGGAGGTT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....TTCGGGTCGTGTAGGAGGTGG................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTGCTTGACAGAGTTTTGGCAGCTGGTCCT.............................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..GGTTCGGGTCGTGTAGGAGGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...GTTCGGGTCGTGTAGGAGGTGGAT............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........GTCGTGTAGGAGGTGGATCC............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......CGGGTCGTGTAGGAGGTGGATCCC............................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCGGCCTCAGGGCCGTTGAAGGAGGTT........ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................TCGTTCCATTCAAAAGTGTATGTT...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................TTTGGCTTGACAGAGT.............................................................................................................. 16 1 3 1.00 3 0 0 0 0 0 0 3 0 0 0
.................................................................................................CAGGCGGACCGACAACAACAACA.................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................GGTGACGAGGGCGTGCCCGTGTAT.................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....TTCGGGTCGTGTAGGAGGTG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................CAGCTGGTCCTAAAGC......................................................................................... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...GTTCGGGTCGTGTAGGAGGTG.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................GATCCCAGATAGGAACTCGTT............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..GGTTCGGGTCGTGTAGGAGGTGGAT............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................AGGCGGACCGACAACAACAACAAGACT............................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................ACCGACAACAACAACAAGACT............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................CAGGCGGACCGACAACAACAAC................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TGACAGAGTGCTGGCAACTGG.................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................AAGCGCTAGGAGTCA.............................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................ACAGGCGGACCGACAACAACAACAAGACTT............................................................................................................................ 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................TTACCAGGCGGACCGA............................................................................................................................................. 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................CGAAAGCGCTAGCAGCCAA............................................................................. 19 3 11 0.18 2 0 0 0 2 0 0 0 0 0 0
..............................AGATAGGAACTAGTTCGCG......................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................TGGCTTGACAGAGTT............................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................CTTGACAGAGTTCTG.......................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGGCCGTTGCAGGATGAT........ 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................TGACAGAGTGCTGGCAG...................................................................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................CTAAAGGGCTAGGAG................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................TCAGGGCCGTTGCTGGAT........... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................AGAAGACTTTTGCTT...................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18621437-18621686 + dsi_21384 AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATCCTTGAGC-AA--------------G----------------------------CAAGGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACCAGGATTTCGCGATCCTCAGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTCCCGGCAACTTCCTCCAACATCGCCG
droSec2 scaffold_7:2694996-2695245 + AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATCCTTGAGC-AA--------------G----------------------------CAAGGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACCAGGATTTCGCGATCCTCAGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTTCCGGCAACTTCCTCCAACATCGCCG
dm3 chr2L:19065220-19065469 + AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CAATGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTTTGAAATCGAACTGTCTCAAAACCGTCGACAAGGATTTCGCGATCCTCGGTTTGTTGTCGGTCCCGAAGCCACTGCTCCCGCACTGGCACATATCGCCGGAGTCCCGGCAACTTTCTCCAACATCGCCG
droEre2 scaffold_4845:5204888-5205137 - AAC---------------CAAGCCCAGCACATCCTCCACCTAGGAT----------------------------------------------CTATCCTTGATG-AA--------------G----------------------------CAAGGTAAGTTCTCGCA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACAAGGATTTCGCGATCGTCGGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTCCCGGTATCTTTCTCCAACATCGCCG
droYak3 2R:5581469-5581717 + AAC---------------CAAGCCCAGCACATCCTCCACCTAGGAT----------------------------------------------CTATCGTTGATC-AA--------------G----------------------------CATGGTAAGTC-TCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATAGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCAAAACCGTCGACAAGGATTTCGCGATCGTCGGCTTGTTGTCGGTCACGCAGCCACTGCTCTCGCACGGGCACATATCGCCGGAGTCCCGGTAACTTCCTCCAACATCGGCG
droEug1 scf7180000409463:1392883-1393127 + AAC---------------TAAACCTAGCACCTCCTCCACCTAGGAC----------------------------------------------C-ACC--------AA---------------GGACA----------------------GCATGGTAAGTT--CTCA------------------TAC-------ATTTA-TGTATTATCGTTTA------CATGGGATAATCGTCCCCT---T---------------GGCT------------------GTCGTTGTTGTTCTGAAAACGAACAGTTTCGAATCCGTCAACAAGGATTTCGCGATCCTCGGTTTGCTGTCGGTCCCTCAACCACTGTTCCCGTACAGGCATATAGCGCCTGAGTCCTGGCAATTTCCTCCAGCAGCGTCG
droBia1 scf7180000302422:4582250-4582493 - AAC---------------TAAGCCCAGCACATCCTCCACATAGGACT----------------------------------AGGAT------C------------AA---------------GTTCC----------------------ACGCGGTAGGTT--CACA------------------TAC-------A-----TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTCGTTGTTGTTCTGGAAACGAACCGTCTCGAAGCCGTCGACAAGAATTTCGCGATCCTCTGTCTGCTGCCGGTCCAGCAGCCACTGCTCCCGCACGGGCACATAGCGCCTGAGTCCTGGTATTCTCTTCCAGCAGCGTCG
droTak1 scf7180000416007:146511-146740 - CAC---------------GAAGCCCAGCACATCCTCCAACTAGGAC----------------------------------------------C-----------------------------------------------------------AGGTAAGTT--TACA------------------TAC-------ACA---TATATTATCTTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTCGTTGTTGTTCTGAAAGCGAACCGTCTCGAAGCCGTCGACCAGGATCTCGCGATCCTCGGCCTGCTGCCTGTCCCGCAGCCACTGCTCCCGAACGGGCACATAGCGGCGGAGACCGGGTATCTTCCTCCAGCAGCGTCG
droEle1 scf7180000491046:3933239-3933494 - CAC---------------CAAGCCCAGCACATCCTCCGCCTAGGAT----------------------------------------------CTGGAGCT------------GCATTA---C----------------------------CAGAGTAAGTT--CATA------------------TAC-------A-----TATATTATCGTTTA------CATGGTATAATCGTCCGCC---CGG---CTGCTGCTGCTGCT------------------GTTGTTGTTGTTCTGGAAACGAACCGTCTCGAAGCCGTCGACAAGGATTTCGCGATCCTCGGTCTGCTGCCGGTCCCGCAGCCATTGCTCCCGCACGGGCACATAGCGCCGCAGTCCGGGCAATTTCCGCCAGCAGCGTCG
droRho1 scf7180000779213:31335-31572 + AAT---------------CAAGCCCAGCACATCCGCCAACTAGGAT----------------------------------------------C------------AA---------------GGCCC----------------------ACATGGTAAGTT--CATA------------------TAC-------A-----TATATTATCGTTTA------CATGGTATAATCGTTCGGC---T---------------GGCT------------------GTCGTTATTGTTTTGGAAACGAACCGTCTCGAAGCCGTCGACCAGGATTTCGCGATCCTCGGTCTGCTGTCGGTCCCGTAGCCACTGCTCCCTCACGGGCACATAGCGCCGGAGGCCGGGCAACTGCCTCCAGCAGCGTCG
droFic1 scf7180000454144:483993-484234 - AAC---------------CAAGCCCAGTACATCCTCCACCTAGGAT----------------------------------------------C------------AA---------------GGGCC----------------------GCAGTGTAAGTT--CACA------------------TAC-------ATACA-TATATTATCGTTTA------CATAGGATAATCGTCCGCA---T---------------GGCT------------------GTTGTTATTGTTCTGAAAACGCACCGTCTCGAAACCATCGACGAGAATTTCGCGATCCTCGGTTTGCTGCCGATCCCGAAGCCACTGTTCCCGCACGGGCACATATCGCCGAAGGCCGGGCAGTTTCCGCCAGCAGCGTCG
droKik1 scf7180000302684:678583-678829 + AACCTCTTCACTCTCCCCCAAGCCCAGCACATCGGCCACCTAGGAC----------------------------------------------CCATTT-----------------------------------------------------GTGGTAAGTT---ACA----------------------------------TTTATTATCGTTTA------CATGGGATAATCGTCAGCA---T---------------TGCC---------------GTTAATGTTGTTGTTCTGGAAACGAACCGTTTCAAAGCCATCGACCAGAATTTCTCGGTCCTCAGGCTGCTGACGCTCGCGCAGCCACTGCTCCCGGATGGGCATATAGCGCCGCAGTCCCGGCCACTTTTGCCAGCAACGCCG
droAna3 scaffold_12916:5360287-5360517 - ACC---------------CAAGTCCAGCACCACATCCACATAAGGG----------------------------------------------T------------AC---------------GCGCA----------------------CACGGGTAAGTT--CGCA----------------------------------TTTATTATAGTTTA------CATTGGATGACCATCGG---------------------GGCT------------------TTGAAGGTTGTTCTGGAAGCGAACGGTTTCAAAGCCGTCGACCAGAATTTCGCGGTCCTCCGCCTGGTGGCGCTCTCGTAGCCACTGCTCCCGTACTGGAATGTACCGTCTTAGTCCGGGCAGCTTTCGCCAGCAACGTCG
droBip1 scf7180000396568:1491033-1491255 + ACC---------------CAAGTCCAGCACCACATCCACATAAGGA----------------------------------------------T---------------------------------------------------------ACGGGTAAGTT--CGCT----------------------------------TTTATTAAGGTTTA------CATTGGATGACCATCGG---------------------GGCT------------------TTGAAGGTTGTTCTGGAAGCGAACCGTTTCAAAACCGTCGACCAGAATTTCACGGTCCTCCGCCTGCTGACGTTCTCGTAGCCACTGCTCTCGTACTGGAATGTAGCGTCTCAGTCCGGGCAGTTTCCGCCAGCAACGACG
dp5 4_group4:6419797-6420061 - GAC---------------CAAGCCC---ACATCGTCTATGTAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCTGCCTGAC---TTCGCTCTTGGTA-TTCGTAAGTT--GAGA------------------TT------TAATATCT-GTTTTA-GGCTTA------CATTCGATAATCATCCGGG---C---------------TGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCGAAGCCATCTACGAGGATCTCGCGATCTTCTGTATGATGGCGCTCTCGCAACCATTGTACC---ACGGGTACATAGCGACGGAGACCAGGCAGTTTTCGCCAGCACCGGCG
droPer2 scaffold_16:441960-442224 + GAC---------------CAAGCCC---ACATCGTCTATGTAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCTGCCTGAC---TTCGCTCTTGGTA-TTCGTAAGTT--GAGA------------------TT------TAATATCT-GTTTTA-GGCTTA------CATTCGATAATCATCCGGG---C---------------TGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCGAAGCCATCTACGAGGATCTCGCGATCTTCTGTATGATGGCGCTCTCGCAACCATTGTACC---ACGGGTACATAGCGACGGAGACCAGGCAGTTTTCGCCAGCACCGGCG
droWil2 scf2_1100000004585:2972825-2973124 + AAG---------------CAAATCTCA-TCAGCCCCCACATAAGGTTGTTTGTGTGTGTGTGTGTGAGAGAGACAGAAGAGAGAAGAAAAGACCATC-----------------------------------------------------CAAAGTAAGCC--AATA------------------TTT----GTTTTATTT-GC-TTTTTATTCA------CATTTGGTATTCATCTGCAATGTGA---CTGCTATTGTGACT------------------GTTGTTATTGTTCTGAAAGCGCACCGTTTCGAAGCCATCGACGAGAATCTCCCGATCCTCGGTTTGTTGCCGCTCTCGCAGCCATTGCTCCCTAACCGGAACATATCGACGCAATCCTGGCAATTTGCGCCAACACCGACG
droVir3 scaffold_12723:3639383-3639656 - GAC---------------AACGCCATA----TG------------------------------------------------------------------------AAGCA--ACATAC---T--------CAACAGTTTCGCTTAAACTATATGGTAAGTT--GGCATTTATAATTAAA------TAC-------ATATAT-AGTTCACATTTTA------CATT-AGTACTCATTGTTGAGGCTG---CTGCCACTGTTATT------------------GTTGTTGTTATTCTGAAAACGCACCGTCTCAAAACCATCGACGAGTATTTCGCGATCTTCGGTTTGCTGGCGCTCGCGCAACCATTGCTCCCGCACTGGCACATAACGCCGCAGTCCCGGCCACTTGGGCCAGCAGCGTCG
droMoj3 scaffold_6500:15172433-15172703 + AGT---------------CAAGGGATGCATAAGTTGCGCTTATAGT----------------------------------------------A----------------------------------------------------------ATGGTAAGTT--GACCTTTGTAGTTA----TGATTACAATT-TCATATTT-ATGTT--AATTTA------CATT-AATACTCATCATTA---CGAATGCTGCTACTGCTATT------------GTTGTTATTGTTGTTGTTTTGAAAACGCACCGTCTCAAAGCCATCGACGAGTATCTCACGATCCTCGGTCTGTTGGCGCTCACGCAACCATTGCTCCCGCACTGGCACATAACGACGCAGTCCCGGCCACTTGCGCCAACAGCGCCG
droGri2 scaffold_15252:3992867-3993155 + AGA---------------CAATGCT-GCATAGGCACAAGC--AGAT----------------------------------------------CTAACGGT-------------------------GC----------------------ATATGGTAAGTC-GGTCATTTATATGGAGATTAGT-TT------ACATGTCA-GTTTAC-AGTTAACATTCAGATTTAGTACTCATCGCTG---C---------TATTGTTGTTGTTGTTGTTATTATTGTTGCTGTTGTTGTTTTGAAAACGCACCGTTTCAAAGCCATCAACGAGTATCTCCCGATCCTCGGTATGCTGTCGCTCGCGCAACCATTGCTCCCGCACCGGCACATAGCGTCTCAATCCGGGCCACTTGCGCCAGCAGCGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATCCTTGAGC-AA--------------G----------------------------CAAGGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACCAGGATTTCGCGATCCTCAGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTCCCGGCAACTTCCTCCAACATCGCCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................CTAGGGT----------------------------------------------CTATCCTTGAGC-.............................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................TTGTTGTTGTTCTGAAA...........................................................................................................................1711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................ATCCTCAGTTTGTTGTCGGTCA.................................................................2211.00100000000100000000
.............................................................................................................................................................................................................................................................................................TTGTTGTTCTGAAAACGAACT....................................................................................................................2111.00100000000100000000
...................................................................................................................................................................................................................................................................................................................TCTCAAAACCGTCGACCAGGA..............................................................................................2111.00100000010000000000
..........................GCACATCCTCCACCTAGGGT----------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................CAGCACATCCTCCACCTAGGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..........................................................................................................................................................................................................................................................................................TTGTTGTTGTTCTGAAAAA.........................................................................................................................1950.40200000011000000000
..................................................................................................TTGAGC-AA--------------G----------------------------CAAGGG..........................................................................................................................................................................................................................................................................1550.20100000000100000000
...........................................................................................................................................................................................................................................................................................TGTTGTTGTTCTGAAAAA.........................................................................................................................1870.14100000001000000000
droSec2
AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATCCTTGAGC-AA--------------G----------------------------CAAGGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACCAGGATTTCGCGATCCTCAGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTTCCGGCAACTTCCTCCAACATCGCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AAC---------------CAAGCCCAGCACATCCTCCACCTAGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CAATGTAAGTTTTCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTTTGAAATCGAACTGTCTCAAAACCGTCGACAAGGATTTCGCGATCCTCGGTTTGTTGTCGGTCCCGAAGCCACTGCTCCCGCACTGGCACATATCGCCGGAGTCCCGGCAACTTTCTCCAACATCGCCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................TAGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100001000000000000000100000
....................AGCCCAGCACATCCTCCACCTA............................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GCC---T---------------GGCT------------------GTTGTTGTTGTTTT...............................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CTAGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------C...............................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CGATCCTCGGTTTGTTGTCGG....................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................T----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CAATG...........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAGCACATCCTCCACCTAGGG.........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGCAACTTTCTCCA.........1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CCGTCGACAAGGATTTCGCGA......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................TCCGCC---T---------------GGCT------------------GTTGTTGT.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..........................GCACATCCTCCACCTAGGGT----------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................GTTGTTGTTGTTTTGAAATCG........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................ATATCGCCGGAGTCCCGGCGT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................G-TATATTATCGTTTA------CATGGGA..................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.......................................CTAGGGT----------------------------------------------CTATACTTGAGC-.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATACTTGAGC-AA--------------G----------------------------CAATG...........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GTTGTTTTGAAATCGAACTGT..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................ATATTATCGTTTA------CATGGGAT.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCACATCCTCCACCTAGGGT----------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GATCCTCGGTTTGTTGTCGGT...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................GGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CAAT............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAGCACATCCTCCACCTAGG..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................GTTTA------CATGGGATAATCGTCC.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................TTTCGCGATCCTCGGTTTGT..........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CACCTAGGGT----------------------------------------------CTATACTTGAG...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TAGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CA..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CA..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................AGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------CAAT............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................ATATTATCGTTTA------CATGGGATA................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CCTCGGTTTGTTGTCGGTCCCG...............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ATCGTCCGCC---T---------------GGCT------------------GTTGTTGT.....................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGGGT----------------------------------------------CTATACTTGAGC-AA--------------G----------------------------................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AAAACCGTCGACAAGGATTTC..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GGATTTCGCGATCCTCGGTTT............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................T---------------GGCT------------------GTTGTTGTTGTTTT...............................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCT------------------GTTGTTGTTGTTTTG..............................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................C---T---------------GGCT------------------GTTGTTGTTGTG.................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAC---------------CAAGCCCAGCACATCCTCCACCTAGGAT----------------------------------------------CTATCCTTGATG-AA--------------G----------------------------CAAGGTAAGTTCTCGCA------------------TAC-------AAATG-TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTCTCAAAACCGTCGACAAGGATTTCGCGATCGTCGGTTTGTTGTCGGTCCCGCAGCCACTGCTCCCGCACGGGCACATATCGCCGGAGTCCCGGTATCTTTCTCCAACATCGCCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AAC---------------CAAGCCCAGCACATCCTCCACCTAGGAT----------------------------------------------CTATCGTTGATC-AA--------------G----------------------------CATGGTAAGTC-TCACA------------------TAC-------AAATG-TATATTATCGTTTA------CATAGGATAATCGTCCGCC---T---------------GGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCAAAACCGTCGACAAGGATTTCGCGATCGTCGGCTTGTTGTCGGTCACGCAGCCACTGCTCTCGCACGGGCACATATCGCCGGAGTCCCGGTAACTTCCTCCAACATCGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AAC---------------TAAACCTAGCACCTCCTCCACCTAGGAC----------------------------------------------C-ACC--------AA---------------GGACA----------------------GCATGGTAAGTT--CTCA------------------TAC-------ATTTA-TGTATTATCGTTTA------CATGGGATAATCGTCCCCT---T---------------GGCT------------------GTCGTTGTTGTTCTGAAAACGAACAGTTTCGAATCCGTCAACAAGGATTTCGCGATCCTCGGTTTGCTGTCGGTCCCTCAACCACTGTTCCCGTACAGGCATATAGCGCCTGAGTCCTGGCAATTTCCTCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
AAC---------------TAAGCCCAGCACATCCTCCACATAGGACT----------------------------------AGGAT------C------------AA---------------GTTCC----------------------ACGCGGTAGGTT--CACA------------------TAC-------A-----TATATTATCGTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTCGTTGTTGTTCTGGAAACGAACCGTCTCGAAGCCGTCGACAAGAATTTCGCGATCCTCTGTCTGCTGCCGGTCCAGCAGCCACTGCTCCCGCACGGGCACATAGCGCCTGAGTCCTGGTATTCTCTTCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droTak1
CAC---------------GAAGCCCAGCACATCCTCCAACTAGGAC----------------------------------------------C-----------------------------------------------------------AGGTAAGTT--TACA------------------TAC-------ACA---TATATTATCTTTTA------CATGGGATAATCGTCCGCC---T---------------GGCT------------------GTCGTTGTTGTTCTGAAAGCGAACCGTCTCGAAGCCGTCGACCAGGATCTCGCGATCCTCGGCCTGCTGCCTGTCCCGCAGCCACTGCTCCCGAACGGGCACATAGCGGCGGAGACCGGGTATCTTCCTCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droEle1
CAC---------------CAAGCCCAGCACATCCTCCGCCTAGGAT----------------------------------------------CTGGAGCT------------GCATTA---C----------------------------CAGAGTAAGTT--CATA------------------TAC-------A-----TATATTATCGTTTA------CATGGTATAATCGTCCGCC---CGG---CTGCTGCTGCTGCT------------------GTTGTTGTTGTTCTGGAAACGAACCGTCTCGAAGCCGTCGACAAGGATTTCGCGATCCTCGGTCTGCTGCCGGTCCCGCAGCCATTGCTCCCGCACGGGCACATAGCGCCGCAGTCCGGGCAATTTCCGCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droRho1
AAT---------------CAAGCCCAGCACATCCGCCAACTAGGAT----------------------------------------------C------------AA---------------GGCCC----------------------ACATGGTAAGTT--CATA------------------TAC-------A-----TATATTATCGTTTA------CATGGTATAATCGTTCGGC---T---------------GGCT------------------GTCGTTATTGTTTTGGAAACGAACCGTCTCGAAGCCGTCGACCAGGATTTCGCGATCCTCGGTCTGCTGTCGGTCCCGTAGCCACTGCTCCCTCACGGGCACATAGCGCCGGAGGCCGGGCAACTGCCTCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droFic1
AAC---------------CAAGCCCAGTACATCCTCCACCTAGGAT----------------------------------------------C------------AA---------------GGGCC----------------------GCAGTGTAAGTT--CACA------------------TAC-------ATACA-TATATTATCGTTTA------CATAGGATAATCGTCCGCA---T---------------GGCT------------------GTTGTTATTGTTCTGAAAACGCACCGTCTCGAAACCATCGACGAGAATTTCGCGATCCTCGGTTTGCTGCCGATCCCGAAGCCACTGTTCCCGCACGGGCACATATCGCCGAAGGCCGGGCAGTTTCCGCCAGCAGCGTCGSizeHit CountTotal NormTotal
No Reads
droKik1
AACCTCTTCACTCTCCCCCAAGCCCAGCACATCGGCCACCTAGGAC----------------------------------------------CCATTT-----------------------------------------------------GTGGTAAGTT---ACA----------------------------------TTTATTATCGTTTA------CATGGGATAATCGTCAGCA---T---------------TGCC---------------GTTAATGTTGTTGTTCTGGAAACGAACCGTTTCAAAGCCATCGACCAGAATTTCTCGGTCCTCAGGCTGCTGACGCTCGCGCAGCCACTGCTCCCGGATGGGCATATAGCGCCGCAGTCCCGGCCACTTTTGCCAGCAACGCCGSizeHit CountTotal NormTotal
No Reads
droAna3
ACC---------------CAAGTCCAGCACCACATCCACATAAGGG----------------------------------------------T------------AC---------------GCGCA----------------------CACGGGTAAGTT--CGCA----------------------------------TTTATTATAGTTTA------CATTGGATGACCATCGG---------------------GGCT------------------TTGAAGGTTGTTCTGGAAGCGAACGGTTTCAAAGCCGTCGACCAGAATTTCGCGGTCCTCCGCCTGGTGGCGCTCTCGTAGCCACTGCTCCCGTACTGGAATGTACCGTCTTAGTCCGGGCAGCTTTCGCCAGCAACGTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................CCAGCACCACATCCACATAAGGG----------------------------------------------T------------AC---------------G...........................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
ACC---------------CAAGTCCAGCACCACATCCACATAAGGA----------------------------------------------T---------------------------------------------------------ACGGGTAAGTT--CGCT----------------------------------TTTATTAAGGTTTA------CATTGGATGACCATCGG---------------------GGCT------------------TTGAAGGTTGTTCTGGAAGCGAACCGTTTCAAAACCGTCGACCAGAATTTCACGGTCCTCCGCCTGCTGACGTTCTCGTAGCCACTGCTCTCGTACTGGAATGTAGCGTCTCAGTCCGGGCAGTTTCCGCCAGCAACGACGSizeHit CountTotal NormTotal
No Reads
dp5
GAC---------------CAAGCCC---ACATCGTCTATGTAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCTGCCTGAC---TTCGCTCTTGGTA-TTCGTAAGTT--GAGA------------------TT------TAATATCT-GTTTTA-GGCTTA------CATTCGATAATCATCCGGG---C---------------TGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCGAAGCCATCTACGAGGATCTCGCGATCTTCTGTATGATGGCGCTCTCGCAACCATTGTACC---ACGGGTACATAGCGACGGAGACCAGGCAGTTTTCGCCAGCACCGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................TCGTCTATGTAACT-----------------------------------------------------------C--GCCCTG.....................................................................................................................................................................................................................................................................................................................21110.001001000000000
..............................................................................................................CTGCAATCGAA-GGCCTGCCTG..................................................................................................................................................................................................................................................................................................2117.0070700000000
................................CGTCTATGTAACT-----------------------------------------------------------C--GCCCTGC....................................................................................................................................................................................................................................................................................................................2117.0070700000000
...................................................................................................................ATCGAA-GGCCTGCCTGAC---TTC..........................................................................................................................................................................................................................................................................................2116.0060500100000
.............................CATCGTCTATGTAACT-----------------------------------------------------------C--GCCC.......................................................................................................................................................................................................................................................................................................................2116.0060600000000
.............................CATCGTCTATGTAACT-----------------------------------------------------------C--GCC........................................................................................................................................................................................................................................................................................................................2015.0050500000000
........................................................................................................C--GCCCTGCAATCGAA-GGCCTG......................................................................................................................................................................................................................................................................................................2114.0040300100000
...............................................................................................................TGCAATCGAA-GGCCTGCCTGA.................................................................................................................................................................................................................................................................................................2114.0040400000000
.............................................................................................................CCTGCAATCGAA-GGCCTGCC....................................................................................................................................................................................................................................................................................................2014.0040220000000
....................................TATGTAACT-----------------------------------------------------------C--GCCCTGCAATC................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................................................CCTGCAATCGAA-GGCCTGCCT...................................................................................................................................................................................................................................................................................................2113.0030300000000
............................ACATCGTCTATGTAACT-----------------------------------------------------------C--GCC........................................................................................................................................................................................................................................................................................................................2113.0030300000000
...............................................................................................................TGCAATCGAA-GGCCTGCCTG..................................................................................................................................................................................................................................................................................................2013.0030300000000
.................................GTCTATGTAACT-----------------------------------------------------------C--GCCCTGC....................................................................................................................................................................................................................................................................................................................2013.0030300000000
..................................................................................................................AATCGAA-GGCCTGCCTGAC---TT...........................................................................................................................................................................................................................................................................................2113.0030300000000
...................................CTATGTAACT-----------------------------------------------------------C--GCCCTGCAAT.................................................................................................................................................................................................................................................................................................................2112.0020200000000
..................................................................................................................AATCGAA-GGCCTGCCTGAC---T............................................................................................................................................................................................................................................................................................2012.0020200000000
........................................................................................................C--GCCCTGCAATCGAA-GGCCTGC.....................................................................................................................................................................................................................................................................................................2212.0020200000000
............................ACATCGTCTATGTAACT-----------------------------------------------------------C--GC.........................................................................................................................................................................................................................................................................................................................2012.0020200000000
.................................GTCTATGTAACT-----------------------------------------------------------C--GCCCTGCA...................................................................................................................................................................................................................................................................................................................2112.0020200000000
...........................................................................................................GCCCTGCAATCGAA-GGCCTG......................................................................................................................................................................................................................................................................................................2012.0020200000000
................................CGTCTATGTAACT-----------------------------------------------------------C--GCCCTG.....................................................................................................................................................................................................................................................................................................................2012.0020200000000
......................................TGTAACT-----------------------------------------------------------C--GCCCTGCAATCGA..............................................................................................................................................................................................................................................................................................................2112.0020200000000
.................................................................................................................................CTGAC---TTCGCTCTTGGTA-TTC............................................................................................................................................................................................................................................................................2111.0010100000000
.......................................GTAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-G...........................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................ATCGTCTATGTAACT-----------------------------------------------------------C--GCCCTG.....................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................GTAACT-----------------------------------------------------------C--GCCCTGCAATCGA..............................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................T-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCT.......................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................TCTATGTAACT-----------------------------------------------------------C--GCCCTGC....................................................................................................................................................................................................................................................................................................................1911.0010010000000
...............................TCGTCTATGTAACT-----------------------------------------------------------C--GCCCT......................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................CCC---ACATCGTCTATGTAACT-----------------------------------------------------------C--C..........................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................CCTGCCTGAC---TTCGCTCTTGG..................................................................................................................................................................................................................................................................................2111.0010100000000
........................C---ACATCGTCTATGTAACT-----------------------------------------------------------C--GC.........................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................CC---ACATCGTCTATGTAACT-----------------------------------------------------------C--G..........................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................GCAATCGAA-GGCCTGCCTGAC---.............................................................................................................................................................................................................................................................................................2111.0010100000000
GAC---------------CAAGCCC---ACATCGTCTATG..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................TAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-G...........................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................TCTATGTAACT-----------------------------------------------------------C--GCCCTGCAA..................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................CCCTGCAATCGAA-GGCCTGC.....................................................................................................................................................................................................................................................................................................2011.0010000100000
........................................TAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GA..........................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................GAA-GGCCTGCCTGAC---TTCGCT.......................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................TGCAATCGAA-GGCCTGCCTGT.................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................GCAATCGAA-GGCCTGCCTGA.................................................................................................................................................................................................................................................................................................2011.0010100000000
........................C---ACATCGTCTATGTAACT-----------------------------------------------------------C--G..........................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................CTGCCTGAC---TTCGCTCTTGGT.................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................CTGCAATCGAA-GGCCTGCCTA..................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................CTGCAATCGAA-GGCCTGCCTGT.................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................CTGCAATCGAA-GGCCTGCCTT..................................................................................................................................................................................................................................................................................................2111.0010000100000
................................................................................................................GCAATCGAA-GGCCTGCCTGAA---.............................................................................................................................................................................................................................................................................................2111.0010100000000
..............................ATCGTCTATGTAACT-----------------------------------------------------------C--GCCC.......................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................CTGCAATCGAA-GGCCTGCC....................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
GAC---------------CAAGCCC---ACATCGTCTATGTAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCTGCCTGAC---TTCGCTCTTGGTA-TTCGTAAGTT--GAGA------------------TT------TAATATCT-GTTTTA-GGCTTA------CATTCGATAATCATCCGGG---C---------------TGCT------------------GTTGTTGTTGTTCTGAAAACGAACTGTTTCGAAGCCATCTACGAGGATCTCGCGATCTTCTGTATGATGGCGCTCTCGCAACCATTGTACC---ACGGGTACATAGCGACGGAGACCAGGCAGTTTTCGCCAGCACCGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................C--GCCCTGCAATCGAA-GGCCTG......................................................................................................................................................................................................................................................................................................2114.004040000
............................ACATCGTCTATGTAACT-----------------------------------------------------------C--GCC........................................................................................................................................................................................................................................................................................................................2113.003030000
...................................................................................................................ATCGAA-GGCCTGCCTGAC---TTC..........................................................................................................................................................................................................................................................................................2113.003030000
...............................TCGTCTATGTAACT-----------------------------------------------------------C--GCCCTG.....................................................................................................................................................................................................................................................................................................................2112.002020000
.............................CATCGTCTATGTAACT-----------------------------------------------------------C--GCCC.......................................................................................................................................................................................................................................................................................................................2112.002020000
..............................................................................................................CTGCAATCGAA-GGCCTGCCTG..................................................................................................................................................................................................................................................................................................2112.002020000
..............................................................................................................................TGCCTGAC---TTCGCTCTTGGTA-...............................................................................................................................................................................................................................................................................2112.002020000
........................................TAACT-----------------------------------------------------------C--GCCCTGCAATCGAA-G...........................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................TCGAA-GGCCTGCCTGAC---TTCG.........................................................................................................................................................................................................................................................................................2111.001010000
..................CAAGCCC---ACATCGTCTATGTA............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................TGTAACT-----------------------------------------------------------C--GCCCTGCAATCG...............................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................TGCAATCGAA-GGCCTGCC....................................................................................................................................................................................................................................................................................................1811.001010000
.............................CATCGTCTATGTAACT-----------------------------------------------------------C--GCC........................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................ACT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCC........................................................................................................................................................................................................................................................................................................2211.001010000
...........................................CT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCC........................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................CCTGCAATCGAA-GGCCTGCC....................................................................................................................................................................................................................................................................................................2011.001100000
..............................ATCGTCTATGTAACT-----------------------------------------------------------C--GCCCT......................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................CCTGCAATCGAA-GGCCTGCCC...................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................CTGCCTGAC---TTCGCTCTTGGT.................................................................................................................................................................................................................................................................................2111.001010000
............................................T-----------------------------------------------------------C--GCCCTGCAATCGAA-GGCCT.......................................................................................................................................................................................................................................................................................................2111.001010000
.................................GTCTATGTAACT-----------------------------------------------------------C--GCCCTGC....................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................TGCAATCGAA-GGCCTGCCTGA.................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................CAATCGAA-GGCCTGCCTGAC---TT...........................................................................................................................................................................................................................................................................................2211.001010000
............................................................................................................CCCTGCAATCGAA-GGCCTGCC....................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................AATCGAA-GGCCTGCCTGAC---TT...........................................................................................................................................................................................................................................................................................2111.001010000
....................AGCCC---ACATCGTCTATGT.............................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................TCTATGTAACT-----------------------------------------------------------C--GCCCTGCA...................................................................................................................................................................................................................................................................................................................2011.001010000
................................CGTCTATGTAACT-----------------------------------------------------------C--GCCCTGC....................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................CT-----------------------------------------------------------C--GCCCTGCAATCGAA-GGC.........................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
AAG---------------CAAATCTCA-TCAGCCCCCACATAAGGTTGTTTGTGTGTGTGTGTGTGAGAGAGACAGAAGAGAGAAGAAAAGACCATC-----------------------------------------------------CAAAGTAAGCC--AATA------------------TTT----GTTTTATTT-GC-TTTTTATTCA------CATTTGGTATTCATCTGCAATGTGA---CTGCTATTGTGACT------------------GTTGTTATTGTTCTGAAAGCGCACCGTTTCGAAGCCATCGACGAGAATCTCCCGATCCTCGGTTTGTTGCCGCTCTCGCAGCCATTGCTCCCTAACCGGAACATATCGACGCAATCCTGGCAATTTGCGCCAACACCGACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................GTGTGTGTGAGAGAGACAG..........................................................................................................................................................................................................................................................................................................................................................1940.25100100
droVir3
GAC---------------AACGCCATA----TG------------------------------------------------------------------------AAGCA--ACATAC---T--------CAACAGTTTCGCTTAAACTATATGGTAAGTT--GGCATTTATAATTAAA------TAC-------ATATAT-AGTTCACATTTTA------CATT-AGTACTCATTGTTGAGGCTG---CTGCCACTGTTATT------------------GTTGTTGTTATTCTGAAAACGCACCGTCTCAAAACCATCGACGAGTATTTCGCGATCTTCGGTTTGCTGGCGCTCGCGCAACCATTGCTCCCGCACTGGCACATAACGCCGCAGTCCCGGCCACTTGGGCCAGCAGCGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................TTGTTATTCTGAAAACGCACCG...................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GATCTTCGGTTTGCTGGCGC....................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
AGT---------------CAAGGGATGCATAAGTTGCGCTTATAGT----------------------------------------------A----------------------------------------------------------ATGGTAAGTT--GACCTTTGTAGTTA----TGATTACAATT-TCATATTT-ATGTT--AATTTA------CATT-AATACTCATCATTA---CGAATGCTGCTACTGCTATT------------GTTGTTATTGTTGTTGTTTTGAAAACGCACCGTCTCAAAGCCATCGACGAGTATCTCACGATCCTCGGTCTGTTGGCGCTCACGCAACCATTGCTCCCGCACTGGCACATAACGACGCAGTCCCGGCCACTTGCGCCAACAGCGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................CAAGGGATGCATAAGTTGCGCTTATA..........................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droGri2
AGA---------------CAATGCT-GCATAGGCACAAGC--AGAT----------------------------------------------CTAACGGT-------------------------GC----------------------ATATGGTAAGTC-GGTCATTTATATGGAGATTAGT-TT------ACATGTCA-GTTTAC-AGTTAACATTCAGATTTAGTACTCATCGCTG---C---------TATTGTTGTTGTTGTTGTTATTATTGTTGCTGTTGTTGTTTTGAAAACGCACCGTTTCAAAGCCATCAACGAGTATCTCCCGATCCTCGGTATGCTGTCGCTCGCGCAACCATTGCTCCCGCACCGGCACATAGCGTCTCAATCCGGGCCACTTGCGCCAGCAGCGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:42 AM