ID:

dsi_21383

 Coordinate:

3r:10226726-10226875 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.6 -32.1 -31.9

Flybase annnotation

CDS [3r_10226876_10226945_+]; exon [3r_10226876_10226945_+]; intron [3r_10225043_10226875_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATATAATAATATTGCTTTCTGGGATGGCGTACGTATCGAATATTGCGCATACGTCGTGTGAGCCCACGCTTTAAACATGTCACTTTCTGTAAGCATCTATTTTTGAGTTCTTTGCTTGCTTAATTGTTGGAATGCTCATCTAGCTTAGGGAGTGCTTATGTTTAGATATTGGTAATATCAATCTTTTTTGTGTGCACAGTTCCAGCTAACTACGACGCAGAGAAGGCCTGGAATGATCATCTGAAGCGC
**************************************************.......((((....(((((((((((((((.(((((((((..((((((((...((((((.........))))))....))).))))).........)))))))))..)))))))))).((((((...)))))).......))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 GSM343915
embryo
 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTGA..... 23 0 1 6.00 6 2 4 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAATGATCATCT....... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TAACTACGACGCAGAGAAGGCCTG................... 24 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAATGATCATCTGA..... 22 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGACGCAGAGAAGGCCTG................... 19 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAATGATCATCTGAAGC.. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GAGAAGGCCTGGAATGATCATCTGA..... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAAGGCCTGGAATGATCATCTGA..... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATCTGAAGCGC 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTGAAG... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAATGATCATC........ 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATCTGG..... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTGAA.... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGACGCAGAGAAGGCCTGGAA................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGAGAAGGCCTGGAATGATCATCTGA..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAATTCCAGCTAACTACGACGCAGA............................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCTACGACGCAGAGAAGGCCTG................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGACGCAGAGAAGGCCTG................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGAAGTCCTGGAATGATCATCT....... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTG...... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACTACGACGCAGAGAAGGCCTGGAAT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGAAGGCCTGGAATGATC........... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAAGGCCTGGAATGATCATCT....... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTAGAATGATCATCTGAA.... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGACGCAGAGAAGGCCTGGA................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGACGCAGAGAAGGCCTGGA................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCTGGAATGATCATCTGAAGCGC 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACTAACTACGACGCAGAGA.......................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGAAGGCCTGGAATGATCATCTGAAG... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TTAAACATGTCACTTTCTGTAAGC........................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAAGGCCTGGAATGATCATCTGAAGC.. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCCAGCTAACTACGACGCA.............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTGAAGC.. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAGGCCTGGAATGATCATCTGG..... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGGAATGATCATCTGAAGCGC 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TAACTACGACGCAGAGAAGGC...................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGACGCAGAGAAGGCCTGGAATGA............. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGACGCAGAGAAGGCCTGGAA................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAAGGATCATCTGAA.... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATC........ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGTCTGGAATGATCATCTGAAGCGC 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATCTGAAG... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGATGCAGAGAAGGCCT.................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGGAATGATCATCTGAAGC.. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGAAGGCCTGGAATGATCATCTG...... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAAGGCCTGGAATGATCATCTGAA.... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAGAGAAGGCCTGGAATGATC........... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGACGCAGAGAAGGCCTGGA................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TACGACGCAGAGAAGGCCTGGAATGAT............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGACGCAGAGAAGGCCTG................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGAAGGCCTGGAATGATCATC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATCTGAA.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGGCCTGGAATGATCATCTGAA.... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGCAGAGAAGGCCTGGAA................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTAACTACGACGCAGAGAAGGCCTG................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GAGAAGGCCTGGAATGATCATCTGAA.... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGACGCAGAGAAGGCCTGG.................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTACGACGCAGAGAAGGCCTGGAAT............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAAGGCCTGGAATGATCATCTGAAGC.. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGAATGATCATCTGAAGCGC 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGCCTGGAATGATCATCTGAAGCGC 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................GCCTGGAATGATCATCTGAAGCGC 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AGGCCTGGAATGATCATCTGA..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCGTGTGAACAGTTCC.............................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................CTTATGTCGAGATATTG.............................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
........................TTGGCGTACGTATGGAA................................................................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................AGCATGTATTTTTGA............................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TGCACAGTCCCAGCT.......................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TTCTGTATGCCTCTATTTGTG................................................................................................................................................ 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATATATTATTATAACGAAAGACCCTACCGCATGCATAGCTTATAACGCGTATGCAGCACACTCGGGTGCGAAATTTGTACAGTGAAAGACATTCGTAGATAAAAACTCAAGAAACGAACGAATTAACAACCTTACGAGTAGATCGAATCCCTCACGAATACAAATCTATAACCATTATAGTTAGAAAAAACACACGTGTCAAGGTCGATTGATGCTGCGTCTCTTCCGGACCTTACTAGTAGACTTCGCG
**************************************************.......((((....(((((((((((((((.(((((((((..((((((((...((((((.........))))))....))).))))).........)))))))))..)))))))))).((((((...)))))).......))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.................................................................................................GATCTAAACTCAAGAAACGAAG................................................................................................................................... 22 3 2 0.50 1 1 0 0 0
..................................................................................................................................CTTACGAGAAGATCG......................................................................................................... 15 1 7 0.29 2 0 2 0 0
.........................................................................................................................................................................................................................CGTCTCTTGCGGTCCTTA............... 18 2 6 0.17 1 0 0 1 0
.................................................................................................................................CCTTACGAGAAGATC.......................................................................................................... 15 1 11 0.09 1 0 1 0 0
.....................................................................................................AAAACTCAAGAACCGTAC................................................................................................................................... 18 2 14 0.07 1 0 0 0 1
...............................................................................................................................AATCTTATGAGTAGAGCGA........................................................................................................ 19 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:38 AM