ID:

dsi_21364

 Coordinate:

3l:7975251-7975313 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7974510_7975250_-]; CDS [3l_7974510_7975250_-]; CDS [3l_7975314_7978483_-]; exon [3l_7975314_7978483_-]; intron [3l_7975251_7975313_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
AAGGATGAGAACCGAGATGCAGCGCTGCTCCAACTGCTCAATAGCGAACGGTAAGACTTGAACCACCAACTTTAAAACTTGAAGAAGACTTAAATACATTTTGATCATTCTAGCTTCGAGCCCTGCCAGTCCATCATTATCTATTGTACGCGTCGTGATGAGT
**************************************************................................((((((.(((((.....))))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................ATCTATTGTACGCGTCGTGATGAG. 24 0 1 2.00 2 0 2 0 0 0 0
...........................................................................................................TTCTAGGTTCGAGCCCT....................................... 17 1 1 1.00 1 1 0 0 0 0 0
..............................................................................TTGCAGACGACTTAAATAC.................................................................. 19 2 3 1.00 3 1 0 2 0 0 0
.....TGAGAACCGAGATGCAGCGCTGCTCCAA.................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................TTGTAGCTTCGAGCCCTACC.................................... 20 2 1 1.00 1 1 0 0 0 0 0
.....TGAGAACCGAGATGCAGCGCTGCTCC.................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................TCATTCTAGGTTCGAG........................................... 16 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................CTAGGTTCGAGCCCT....................................... 15 1 2 0.50 1 0 0 1 0 0 0
...........................................................................................................TCCTAGCTTCGAGCCCT....................................... 17 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................................TTGTAGGTTCGAGCCCT....................................... 17 2 11 0.45 5 4 0 1 0 0 0
...............................................................................TGCAGACGACTTAAATAC.................................................................. 18 2 7 0.43 3 0 0 2 0 0 1
............................................................................................................TCTAGGTTCGAGCCC........................................ 15 1 3 0.33 1 1 0 0 0 0 0
..........................................................................................................ATTGTAGGTTCGAGCCCT....................................... 18 2 8 0.25 2 0 0 2 0 0 0
................................................................................................................GGTTCGAGCCCCGTCAGTCC............................... 20 3 5 0.20 1 0 0 0 0 1 0
.............................................TAACGGTAAGACTAGAAC.................................................................................................... 18 2 5 0.20 1 0 0 0 1 0 0
........................................................................................................TCATTCTAGGTTCGGGTCC........................................ 19 3 7 0.14 1 0 0 1 0 0 0
.........................................................................................................CATTCTAGGTTCGAGTC......................................... 17 2 7 0.14 1 1 0 0 0 0 0
............................................................................................................TCTAGGTTCGAACCCT....................................... 16 2 19 0.11 2 2 0 0 0 0 0
...........................................................................................................TTCTAGGTTCGATCCCT....................................... 17 2 12 0.08 1 1 0 0 0 0 0
..........................................................................................................ATTCTAGGTTCGAGTC......................................... 16 2 20 0.05 1 1 0 0 0 0 0
.........................................................................................................CATTCTAGGTTCGAGT.......................................... 16 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................TTGTAGGTTCGAGCCC........................................ 16 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTCCTACTCTTGGCTCTACGTCGCGACGAGGTTGACGAGTTATCGCTTGCCATTCTGAACTTGGTGGTTGAAATTTTGAACTTCTTCTGAATTTATGTAAAACTAGTAAGATCGAAGCTCGGGACGGTCAGGTAGTAATAGATAACATGCGCAGCACTACTCA
**************************************************................................((((((.(((((.....))))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902009
testis
....................................................TTCTGAACTTGGGGGTT.............................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0
......................................................CTGAACTTGGGGGTT.............................................................................................. 15 1 8 0.38 3 0 2 0 0 1 0 0
.....................................................TCTGAACTTGGGGGTT.............................................................................................. 16 1 4 0.25 1 0 1 0 0 0 0 0
.......................CCACGAGGCTGTCGAGTTAT........................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0
......................................................CTGTGCTTGGTGGTTGAA........................................................................................... 18 2 13 0.15 2 0 0 2 0 0 0 0
.......................................................TGAGCTTGGTGGTTGAAA.......................................................................................... 18 1 10 0.10 1 0 0 1 0 0 0 0
......................................................CTGAGCTTGGTGGTTGA............................................................................................ 17 1 12 0.08 1 0 0 1 0 0 0 0
.......................................................TGAGCTTGGTGGTTGA............................................................................................ 16 1 16 0.06 1 0 0 1 0 0 0 0
.........................................................................................................GTAAGAGCGAAGCTAGTGA....................................... 19 3 19 0.05 1 0 0 0 0 0 1 0
.......TTTTGGCCCTACGTAGCGA......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:34 AM