ID:

dsi_21359

 Coordinate:

3r:18142443-18142696 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.2 -51.9 -51.9

Flybase annnotation

exon [3r_18142697_18143038_+]; CDS [3r_18142697_18143038_+]; exon [3r_18139926_18142442_+]; CDS [3r_18139926_18142442_+]; intron [3r_18142443_18142696_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCGCGCCAAGGTCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTACTTTTTAAAACATACAACTCAAACTACAAAGTGCAAGTCGAAAAAATATTTTTAAACGAAAAGTATTGCATTTCGACTTGCACGTTCTCTATATCGAAAATACAAAATTAAGTGTTTTGAACCATTTATTTTATGTTTCCAAAATTTATTTCTTTTCATTTTTGGTAAACCGAACACCAAATTACATCCTTGCGTCGAAATTATTATTTTGCATGATGTTGATTTTGTTTGTGGGCCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACTGCCCCCGTTTTGGCCACGCCCT
***************************************************************************************(((((((((((((.(((((((((.....)))))))))...)))))))))))))..........((.(((((((........)))))))))..............((((((((((...............)))))).))))((((((..((((((((((..(((...(((((....)))))))).)))).))))))))))))(((((.....)))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 M023
head
 GSM343915
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..........GGTCAAGGATTCCAAGGCCTG................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................ATTCCAAGGCCTGTTAGCTACC.......................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................TTCCAAGGCCTGTTAGCTACC.......................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CCACTTCGTCACGTACTG..................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................TTCCAAGGCCTGTTAGCTA............................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................ATTCCAAGGCCTGTTAGCTACCCA........................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TGTTTGTGGGCCTGATGCTCA................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................GTGCAAGTCGAAAAAATA......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................CCAAGGCCTGTTAGCTACC.......................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTAATTGTTTTGAACCACTTA......................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................CATTTTTGGTAAACAGAACT......................................................................................................................... 20 2 5 0.40 2 0 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTTTTGGTAAACAGAACT......................................................................................................................... 19 2 11 0.27 3 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AATTTATTTCTTTTCAGTTGTGT.................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CATTTTTGGTAAGCTGAAC.......................................................................................................................... 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTTTTGGTAAGCAGAACA......................................................................................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTTTTGGTAAGCCGAACT......................................................................................................................... 19 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTGGTAAAGCGAAC.......................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................TTTTGGATTTCGACTTGCACT..................................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................TTCTTTATATCGAAAA..................................................................................................................................................................................................... 16 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................GTGGGCCTCGTGCTCAG.................................................. 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CATTTTTGGTAAGCTGAACC......................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTGAAGGATTTGTTTTATG.................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGGTAAACCGTACGCGAA..................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
................................................AGGTCAGTAGTTCTTAAA................................................................................................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGCGCGGTTCCAGTTCCTAAGGTTCCGGACAATCGATGGGTCGCCCGTCCAGTCATGAAAAATTTTGTATGTTGAGTTTGATGTTTCACGTTCAGCTTTTTTATAAAAATTTGCTTTTCATAACGTAAAGCTGAACGTGCAAGAGATATAGCTTTTATGTTTTAATTCACAAAACTTGGTAAATAAAATACAAAGGTTTTAAATAAAGAAAAGTAAAAACCATTTGGCTTGTGGTTTAATGTAGGAACGCAGCTTTAATAATAAAACGTACTACAACTAAAACAAACACCCGGACTACGAGTCTTCAAGGTGCGGGTGAAGCAGTGCATGACGGGGGCAAAACCGGTGCGGGA
***************************************************(((((((((((((.(((((((((.....)))))))))...)))))))))))))..........((.(((((((........)))))))))..............((((((((((...............)))))).))))((((((..((((((((((..(((...(((((....)))))))).)))).))))))))))))(((((.....)))))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................................................................................................................GGTTTAATGTAGGAACGCAGT.................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................CCGTCCAGTCCTGAAAAA................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TTAAATAAAGAAAAGT........................................................................................................................................... 16 0 7 0.57 4 4 0 0 0 0 0 0 0
............................................................................................TCAGCTTTCTTAGAAAAAT................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACAAAGGTTTTTAATAGA.................................................................................................................................................. 19 2 12 0.25 3 0 0 0 3 0 0 0 0
...........................GGACAATCGAGGGGT........................................................................................................................................................................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 1 0 0 0 0
...........................GGACAAGCGATGGGT........................................................................................................................................................................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................GAGTCTACGAGGTGCGGGTCA.................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0
..........................AGGACAATCGATGGG......................................................................................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TAGTCTTCGAGGTGCGGGTCA.................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................................................................ACGTCAAGCTGAACGTACA.................................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0 0 0
AGGCGCGGTTCCAGCTCG................................................................................................................................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 1 0 0 0
.........................................................................................................AAAAATTTGCTTTTTGTCACG.................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 1 0 0 0
............................................................................................................................CGTCAAGCTGAACGTACA.................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0 0
........TTAGAGTTCCTAAGGTTGCG...................................................................................................................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0 0 0
....................AGGTTCCGGACAATCTC............................................................................................................................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 1 0 0 0
...........................................................................................................................ACGTCAAGCTGAACGT....................................................................................................................................................................................................................... 16 1 15 0.07 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TACAAAGGTTTTTAATA.................................................................................................................................................... 17 1 18 0.06 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................CGGCTTTAATAATAA......................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................................................................CTAAAGCTGAAGGTGCTAG.................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0
........................TTAGGACAATCGATGGGTA....................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
....................................................................................................................................................AAAGCTTTTATGTTT............................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TAAATAAAGAAAAGT........................................................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................CGCGTCGAATCATGAAAAA................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:18142393-18142746 + dsi_21359 T------CCGCGCCAAGGTCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTACTTTTTA------AAAC--------------------------------------AT--ACAACTCAAACTA-CAAAGTGCAAGTCGAAAAA-ATATTTTTA-AACGAAAAGTAT-------------------------------TGCATTTCGACTTGCACGTTCTCTATATCGA-AAA-TACAAA-ATTAAGTGTTT-----TGA-ACCATTTA----TTTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGAACA---CCAAA-TTACATCCTTGCGTCGAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCT
droSec2 scaffold_0:18978422-18978775 + T------CCGCGCCAAGGTCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTACTTTTTA------AAAC--------------------------------------AT--ACAACTCAAACTA-CAAAGTGCAAGTCGGAAAT-ATATTATTA-AACGAAAAGTAT-------------------------------TGCATGCCGACTTGCAAGTTCTCTATATCGA-AAA-TACAAT-ATTAAGTGTTT-----TGA-ACCATTTA----TTTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGAACA---CCAAA-TTACATCCTTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGATTCTCAGAAGTTCCACGCCCACTTCTTCACGTACTG---CCCCCGTTTTGGCCACGCCCT
dm3 chr3R:18617673-18618029 + T------CAGCGCCAAGGTCTAGGATTCCTAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAGTCTTTA------AAAC--------------------------------------AC--ACATCTCAAACTA-AGAAGTGCAAGTCGGAAAAAGTATTATTATAACGAAAAGTAT-------------------------------TGCATTCCGACTTGCAAGTTCTCTATATCGA-AAA-TACAAA-ATTAATTGTTT-----TGA-ATCATTTA----TGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGTACA---CCAAATTTACATCCTTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGC---CCTGATGTTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCT
droEre2 scaffold_4820:9455284-9455657 - T------CGGCGCCAAGGTCTAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAGTTTTTA------AAAC--------------------------------------TC--ACATCTTAAACTA-TGAAGTGCAAGTCGGAAAA-GTATG-TTA-AGC-------ATAACTTAAAA-GAT--TACATTTTAATTTAAATGC-TTCCGACTTGCAAGTCCTCTG-GC-GA-AAA-TTCAAA-ATTAATTGTTT-----CGA-ACCATTTATGTATGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGCAAACCGA--CCAACC------AAATCCGTGCGTCAAA-------ATTATTA----------TTTTGCATGATGTTG---TTGATT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTCTGGCCACGCCCT
droYak3 3R:19469057-19469426 + T------CGGCGCCAAGATCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAATTCTCA------AAAC--------------------------------------ACACACATCTTACACTA-TGAAGTGCAAGTCGGTGGA-GTATTCTTA-AACCAAAAA-------------GAT--TATAATTTAATTTAAATGC-TACCGACTTGCACGTCCTCTA-GC-GA-ACA-TTCAAA-ATTAATTGTTT-----TGA-ACCATTTATGTATGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGCAAATCAAA-CCAAAC------AAATTCCTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TCGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACCTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCT
droEug1 scf7180000409768:763608-763884 + T------CGGCGCCAAGGTCAAGGATTCCAAGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTATTTTTTA----TGAAT-GAA------------------------------------------TCTTTA----------------------A-------------------------------------------------------------------------------A-AT-GAAAAA-TTCGAA-ATTATTTATTT-----TGA-ACT---------TGTT--ATGTTTACAAAA--TTTTATTTATTT------TCGTTTTT-GGTAAACCGAAAC---CC------AAATCCTTGCGT-GAA-------ATTATTA----------T-TTGCATGATGT------TGATT--TTGTT-----TG--------TGGGGTGTCCGATGTTCAGATGTTCCACGCCCACATCGTCACGTACTG---CCCCCGTTTTAGCCACGCCTT
droBia1 scf7180000302402:5092036-5092382 - T------CTGCGCCAAGGTCAAGGATTCCACGACCAGTGAGCTACCCAGCGGGCAGGTCAGTATTTT--A----AAAGT-TAAAC------------------------------------------TTGGGTACTGGAAAAGCAAATGTGTAAA-------------C-----------TTTAAAAGGATCCTATATTATTTTTTAAATGA-TACACACGTGCAAATCCTCTA-AT-GAAAAA-TTCAAA-ATTATTCATTT-----TGG-ACT---------TGGT--TTATTTACAAAA--T-TTATTTCCTT------TCATTTTT-GGTCAACCAAACC---G-------CCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---TCTGATGCTCAGAAGTACCACGCCCACTTCGTCACGTACTG---CCCCCGTTAAGGCCACGCCGT
droTak1 scf7180000415417:31795-32012 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTGCAACTCCTTCA-AT-GATAAA-TTCAAA-ATTATTTCTTT-----GGT-ACA---------TGTT--ATGTTTACGAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCCGAAA---CGAACCCACCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGTTC-----TAAT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACCG---CCCCCGTTATGGCCACGCCCT
droEle1 scf7180000491017:316819-317156 + T------CGGCGCCAAGGTCAAGGATTCCACGGCCAGTGAGCTACCCAGCGGGCAGGTTAGTATTCTATA------TAC-TAAAT------------------------------------------TCGAAGTATGGAAGTGCAAATCGGTCAA-------TTA-AATG------------------GA----------------AT-AATAAACCGACTTGGAAATCCCTTG-AT-GAAACT-TACAAA-ATTATTTATTT-----TGA-AAA---------TTTTTTATGTTTACAAAA--T-TTATTTCTTT------TCATTTTTCGGCAAACCAT--CCGTCC------CCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATTTGTTGTT-----TG--------TGGG-TCTCTGATGCTTAGAAGTTCCACGCCCACTTCATCACGTACTG---CCCCCGTTATGGCCACGCCCT
droRho1 scf7180000779414:73322-73656 - T------CGGCGCCAAGGTCAAGGATTCCACGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTACTTTTGA------AAT-TTAAT------------------------------------------TTAAAATACGGAAGTGCAAATCGGTCA---------------------------TTACGAAGA--------TATATTTAAGAAA-ATATCGACTTGCTTATCCGCCA-AT-GAAATT-TACAAA-ATTATTTCTTT-----TGA-AA----------TGGT--ATGTTTACAAAA--T-TTATTTCTTT------TCATTTTG-GGCAAACCAT--C---CCA-----CCGTCCTTCCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------CGGG---CCTGATGCTTAGAAGTTCCACCCCCACTTCGTCACGTACTG---CCCCGGTTATGACCACGCCCT
droFic1 scf7180000454055:201774-202084 - T------CGGCGCCCAGGTCAAGGATTCCAAGGCCAGTGAGCTACCCAGCGGGAAGGTCAGTATTTT--C----AAAT--GGAA--------------------------------------------------ACGGAAGTGCAAATCAGTAA-----------------------------------------------------------TTACGACTTGCAAATCCTTCA-AT-GAAATT-TACAAAAATTATTTT-TT-----GGGAA-C---------TGTT--ATGTTTACAAAA--T-TTATTTCTTT------TCATTTTT-GGTATACCGAAAC---CCCCCGAAAAATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGCTGTTCAGAAGTTCCACGCCCACCTCGTCACGCACTG---CCCCCGTTATGGCCACGCCCT
droKik1 scf7180000302697:1180372-1180632 + T------CGGCGCCCAGGTCAAGGATTCCGCGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTATATATTA------T-----------------------------------------ATATATATTTTAC-----------------------------------------------------------------------------------------------------------AACAAA-TTAGAC-ATGATTTCTTT-----TGG-ACT---------GTTT--TTCTTTACAAAA--TTTAATTTCTTT------TCGTTTTT-GGTGTACCCT------------TTTGGCTCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TACCC-----------------------GGT--TACCCCTTATCAGGAGTACCACGCCCACTTCCTCAAAAACTA---TTCCCGTCATGGGCACGCCTT
droAna3 scaffold_13340:12700032-12700308 - T------CGGCGCCCAGGTCGAGGATTCCACGGCCAGTGAGCTACCCTGCCGGAAGGTCGGTATTTA--A----AGAAT-TAAGT------------------------------------------CTTA----------------------A----------------------------------------------TAT--------------------------------TT-AAAGAA-TTTTAA-ATTATTTATTT-----TGG-AAT---------CATT--TTATTTACAAAAAATATTATTTCTTT------TCGTTTTT-GGTGAACCCT--------------------CTACCCCCAA-------ATTATGA----------TTTTGCATGGTGTTTCCGTTGTTT--TCGTTACGT-TT--------TGGT---CACCCAATTCAGAAGTACTACGCCCACCTCATCGCGAACCG---TCCCTGTGACGGCCACGCCCT
droBip1 scf7180000396691:1586710-1586983 - T------CGGCGCCCAGGTCGAGGATTCCAAGGCCAGTGAGCTACCCAGCAGGAAGGTCAGTATTTC--A----AGAAA-TAATC------------------------------------------AGTG----------------------G----------------------------------------------TAT--------------------------------TT-AAAAATTTTATAA-ATTATTTATTT-----TGG-AAA---------TATT--TTATTTAAAAAA-ATATTATTTCTTT------TCGTTTTT-GGTCAACCT-----------------------TCTTCCAA-------ATTATGA----------TTTTGCATGGTGTTTCCATTGATT--TTGTTACA--TT--------TGGG--CCCTCTTACTCAGAAGTACCACGCCCACCTCATCGCGCACTG---TCCCCGTAATGGCTACGCCCT
dp5 2:6209278-6209353 - T------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCATGATTT------TACGT--T---------T------------------TG--ATACAGAAGTTCCACACCCACATCGACGCGCACAGCGGCCCCTGCGGTGGCCAG-----
droPer2 scaffold_0:35157-35232 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCATGATTT------TACGT--T---------T------------------T--AATACAGAAGTTCCACACCCACATCGACGCGCACAGCGGCCCCTGCGGTGGCCAG-----
droWil2 scf2_1100000004902:1416586-1416859 - G------CAGCGCAAAGATCACGAATTCCACGGCCAGTGAGCTATCCAGCCGGACGGTAAGTTTTACTCATTAAA-------AATTTGGATAAATTTAATT------------------------------------------------------------------------------------------------------------------------------------------TTATT-TTCAAA-ATTTAAATTTTTTCACTTAAATCTTTATTTTGTGTT--TTGTTT-------------TTCCTTT------TC-----------------------TCT-----CCCTTGTTTCTT-GTTCCTTGGAA--CCTTTTTTGCATTGTTTTGCATGATTATT----TGATT--TCTTT-----AA-----ACTTGGG---C-AG--TGGCAGGAGTTGCATTCCAACGCCAACTCGC--------CCAATTA----GTAGCCCAT
droVir3 scaffold_12822:393834-394065 - TCCAACTCGGCGCAGAAATCGCGTATACCACGGCCAGTCAGCTACCCTGCGGGCAGGTGAGTGAA-------------A-AAA-C------------------------------------------CGTT----------------------G----------------------------------------------TCA--------------------------------GA-AAGCGTTTTGGAA-ATT--TTGTTT-----TGG-AAC---------T------TGTAGCTAAAT--T-TTGTTTCTTT------TTCGTT-C-GG-----------------------CATTTGTGCAC-AAC-------TTTATCA----------TTTTGCATGATTTTT-----TCAC--C-------------------TGGG---TAT----GGCAGAAGTCCGAAGTCAAGTGCC--------AG------CGATCCTTGTCCCGCTCG
droMoj3 scaffold_6540:33020442-33020686 - T------CGGCGCAGAAGTCACGCATCCCACGGCCAGTCAGCTATCCGGCGGGCAGGTGAGTTCGCGTGG---GGGAGA-C-AAA---------CTGAATT------------------------------------------------------------------------------------------------------------------------------------------GGTTT-TTCGAA-ATTATGATTTT-----TGG-AAT---------CTT------TTTGCTAAA--TTTGATTTCTTCTTCTTTTCATTT---GGA----------------------------------ACA-------TTTATCG----------TTTGGCATGATTT------ATGTTT-GTGTTTTGTTTCCGTAAACCC-CG---CCGGGACCACAGAAGTCCGAAGCCAA---------GTGCCG---CCTCGCCTGCGGC--------
droGri2 scaffold_15074:3414174-3414406 + T------CGGCGCTAAAGTCACGCATACCACGACCAGTCAGTTATCCAGCCGGCAGGTAAGTCATGATCA------ACATCAAAA---------TCGAATCGACTCAAAATTTATTGTTTATACAT------------------------------------------------------------------------------------------------------------------------------TTTTTTTT-TT-----TTGAA-T---------T-TT--CT-TTTGCTAAA--T-TT--TTGTTT------TCTTTTTTTGGCACAACAA-----------------TTGTTG--T-TCT-------TTTTTTTTTTTGTATGATTTTGCATGA--------------------------------------------CTTAATGACAGAAGTCCGAAGCCTAGTCCGAGC-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T------CCGCGCCAAGGTCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTACTTTTTA------AAAC--------------------------------------AT--ACAACTCAAACTA-CAAAGTGCAAGTCGAAAAA-ATATTTTTA-AACGAAAAGTAT-------------------------------TGCATTTCGACTTGCACGTTCTCTATATCGA-AAA-TACAAA-ATTAAGTGTTT-----TGA-ACCATTTA----TTTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGAACA---CCAAA-TTACATCCTTGCGTCGAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................GGTCAAGGATTCCAAGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................ATTCCAAGGCCTGTTAGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........................TTCCAAGGCCTGTTAGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCGTCACGTACTG---.....................1811.00110000000000000000
.........................TTCCAAGGCCTGTTAGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
........................ATTCCAAGGCCTGTTAGCTACCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-----TG--------TGGG---CCTGATGCTCA......................................................2111.00100000000000100000
............................................................................................................................................GTGCAAGTCGAAAAA-ATA..................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................CCAAGGCCTGTTAGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
droSec2
T------CCGCGCCAAGGTCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTACTTTTTA------AAAC--------------------------------------AT--ACAACTCAAACTA-CAAAGTGCAAGTCGGAAAT-ATATTATTA-AACGAAAAGTAT-------------------------------TGCATGCCGACTTGCAAGTTCTCTATATCGA-AAA-TACAAT-ATTAAGTGTTT-----TGA-ACCATTTA----TTTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGAACA---CCAAA-TTACATCCTTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGATTCTCAGAAGTTCCACGCCCACTTCTTCACGTACTG---CCCCCGTTTTGGCCACGCCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................ATTCCAAGGCCTGTTAGCTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.......................GATTCCAAGGCCTGTTAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................GTCAAGGATTCCAAGGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................................GTTAGCTACCCAGCGGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
T------CAGCGCCAAGGTCTAGGATTCCTAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAGTCTTTA------AAAC--------------------------------------AC--ACATCTCAAACTA-AGAAGTGCAAGTCGGAAAAAGTATTATTATAACGAAAAGTAT-------------------------------TGCATTCCGACTTGCAAGTTCTCTATATCGA-AAA-TACAAA-ATTAATTGTTT-----TGA-ATCATTTA----TGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCGTACA---CCAAATTTACATCCTTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGC---CCTGATGTTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................TGTTAGCTACCCAGCGGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAATTTACATCCTTGCGTCAAA-------ATT....................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GGATTCCTAGGCCTGTTAGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCTAGGATTCCTAGGCCTGTTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................T-------------------------------TGCATTCCGACTTGCAAGTTCT..........................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GATTCCTAGGCCTGTTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................TAGGATTCCTAGGCCTGTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATTA----------TTTTGCATGATGT------TGATT--TTGT........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TCAAACTA-AGAAGTGCAAGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAGGATTCCTAGGCCTGTTAGCTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTTAGCTACCCAGCGGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTACTG---CCCCCGTTTTGG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----TG--------TGGC---CCTGATGTTCAG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GTGCAAGTCGGAAAAAGT...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCTAGGCCTGTTAGCTACCCAGCGGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTGTT-----TG--------TGGC---CCTGATGTT........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GGATTCCTAGGCCTGTTAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTCGTCACGTACTG---CCCCC................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........GCGCCAAGGTCTAGGATTCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTGTT-----TG--------TGGC---CCTGATGTTCA......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................TCCTAGGCCTGTTAGCTACCCAGCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CAGGTCAGTAGTCTTTA------AAAC--------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATTTACATCCTTGCGTCAA...............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCATGATGT------TGATT--TTGT........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTGTT-----TG--------TGGC---CCTGATGTTCC......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTCGTCACGTACTG---CCCCC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AAGTGCAAGTCGGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCGTCAAA-------ATTATTA----------TTTTGCATGA............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTGTT-----TG--------TGGC---CCTGATGTTCAG.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................CCCAGCGGGCAGGTCAGTAGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T------CGGCGCCAAGGTCTAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAGTTTTTA------AAAC--------------------------------------TC--ACATCTTAAACTA-TGAAGTGCAAGTCGGAAAA-GTATG-TTA-AGC-------ATAACTTAAAA-GAT--TACATTTTAATTTAAATGC-TTCCGACTTGCAAGTCCTCTG-GC-GA-AAA-TTCAAA-ATTAATTGTTT-----CGA-ACCATTTATGTATGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGCAAACCGA--CCAACC------AAATCCGTGCGTCAAA-------ATTATTA----------TTTTGCATGATGTTG---TTGATT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACTG---CCCCCGTTCTGGCCACGCCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................GCATGATGTTG---TTGATT--TTGTT-----TG--------TGG.....................................................................2711.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCCACGCCCACTTCGTCACGTAC..........................2711.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGTACTG---CCCCCGTTCTG..........2211.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTG---CCCCCGTTCTGA.........1911.0010000100
......................GGATTCCAAGGCCTGTTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.................GTCTAGGATTCCAAGGCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
droYak3
T------CGGCGCCAAGATCAAGGATTCCAAGGCCTGTTAGCTACCCAGCGGGCAGGTCAGTAATTCTCA------AAAC--------------------------------------ACACACATCTTACACTA-TGAAGTGCAAGTCGGTGGA-GTATTCTTA-AACCAAAAA-------------GAT--TATAATTTAATTTAAATGC-TACCGACTTGCACGTCCTCTA-GC-GA-ACA-TTCAAA-ATTAATTGTTT-----TGA-ACCATTTATGTATGTT--ATGTTTCCAAAA--T-TTATTTCTTT------TCATTTTT-GGCAAATCAAA-CCAAAC------AAATTCCTGCGTCAAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TCGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACCTCGTCACGTACTG---CCCCCGTTTTGGCCACGCCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................TCCAAGGCCTGTTAGCTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000
.........................................................................................................................CACATCTTACACTA-TGAAGTGCAAGTCGGT.........................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..................................................................................................................................................................................................................................GTCCTCTA-GC-GA-ACA-TTCAAA-ATTA.................................................................................................................................................................................................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TCGTT-----TG--------TGGG---CCTGATGCTCA......................................................2411.00100100000000
........................ATTCCAAGGCCTGTTAGCTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
.........................................................................................................................................................................................................AATTTAAATGC-TACCGACTTG..................................................................................................................................................................................................................................................................................................2111.00100100000000
...................CAAGGATTCCAAGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................................................................................................CATCTTACACTA-TGAAGTGCAAGTCGGT.........................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEug1
T------CGGCGCCAAGGTCAAGGATTCCAAGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTATTTTTTA----TGAAT-GAA------------------------------------------TCTTTA----------------------A-------------------------------------------------------------------------------A-AT-GAAAAA-TTCGAA-ATTATTTATTT-----TGA-ACT---------TGTT--ATGTTTACAAAA--TTTTATTTATTT------TCGTTTTT-GGTAAACCGAAAC---CC------AAATCCTTGCGT-GAA-------ATTATTA----------T-TTGCATGATGT------TGATT--TTGTT-----TG--------TGGGGTGTCCGATGTTCAGATGTTCCACGCCCACATCGTCACGTACTG---CCCCCGTTTTAGCCACGCCTTSizeHit CountTotal NormTotal
No Reads
droBia1
T------CTGCGCCAAGGTCAAGGATTCCACGACCAGTGAGCTACCCAGCGGGCAGGTCAGTATTTT--A----AAAGT-TAAAC------------------------------------------TTGGGTACTGGAAAAGCAAATGTGTAAA-------------C-----------TTTAAAAGGATCCTATATTATTTTTTAAATGA-TACACACGTGCAAATCCTCTA-AT-GAAAAA-TTCAAA-ATTATTCATTT-----TGG-ACT---------TGGT--TTATTTACAAAA--T-TTATTTCCTT------TCATTTTT-GGTCAACCAAACC---G-------CCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---TCTGATGCTCAGAAGTACCACGCCCACTTCGTCACGTACTG---CCCCCGTTAAGGCCACGCCGTSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTGCAACTCCTTCA-AT-GATAAA-TTCAAA-ATTATTTCTTT-----GGT-ACA---------TGTT--ATGTTTACGAAA--T-TTATTTCTTT------TCATTTTT-GGTAAACCCGAAA---CGAACCCACCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGTTC-----TAAT--TTGTT-----TG--------TGGG---CCTGATGCTCAGAAGTTCCACGCCCACTTCGTCACGTACCG---CCCCCGTTATGGCCACGCCCTSizeHit CountTotal NormTotal
No Reads
droEle1
T------CGGCGCCAAGGTCAAGGATTCCACGGCCAGTGAGCTACCCAGCGGGCAGGTTAGTATTCTATA------TAC-TAAAT------------------------------------------TCGAAGTATGGAAGTGCAAATCGGTCAA-------TTA-AATG------------------GA----------------AT-AATAAACCGACTTGGAAATCCCTTG-AT-GAAACT-TACAAA-ATTATTTATTT-----TGA-AAA---------TTTTTTATGTTTACAAAA--T-TTATTTCTTT------TCATTTTTCGGCAAACCAT--CCGTCC------CCATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATTTGTTGTT-----TG--------TGGG-TCTCTGATGCTTAGAAGTTCCACGCCCACTTCATCACGTACTG---CCCCCGTTATGGCCACGCCCTSizeHit CountTotal NormTotal
No Reads
droRho1
T------CGGCGCCAAGGTCAAGGATTCCACGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTACTTTTGA------AAT-TTAAT------------------------------------------TTAAAATACGGAAGTGCAAATCGGTCA---------------------------TTACGAAGA--------TATATTTAAGAAA-ATATCGACTTGCTTATCCGCCA-AT-GAAATT-TACAAA-ATTATTTCTTT-----TGA-AA----------TGGT--ATGTTTACAAAA--T-TTATTTCTTT------TCATTTTG-GGCAAACCAT--C---CCA-----CCGTCCTTCCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------CGGG---CCTGATGCTTAGAAGTTCCACCCCCACTTCGTCACGTACTG---CCCCGGTTATGACCACGCCCTSizeHit CountTotal NormTotal
No Reads
droFic1
T------CGGCGCCCAGGTCAAGGATTCCAAGGCCAGTGAGCTACCCAGCGGGAAGGTCAGTATTTT--C----AAAT--GGAA--------------------------------------------------ACGGAAGTGCAAATCAGTAA-----------------------------------------------------------TTACGACTTGCAAATCCTTCA-AT-GAAATT-TACAAAAATTATTTT-TT-----GGGAA-C---------TGTT--ATGTTTACAAAA--T-TTATTTCTTT------TCATTTTT-GGTATACCGAAAC---CCCCCGAAAAATCCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TGATT--TTGTT-----TG--------TGGG---CCTGCTGTTCAGAAGTTCCACGCCCACCTCGTCACGCACTG---CCCCCGTTATGGCCACGCCCTSizeHit CountTotal NormTotal
No Reads
droKik1
T------CGGCGCCCAGGTCAAGGATTCCGCGGCCAGTGAGCTACCCAGCGGGCAGGTCAGTATATATTA------T-----------------------------------------ATATATATTTTAC-----------------------------------------------------------------------------------------------------------AACAAA-TTAGAC-ATGATTTCTTT-----TGG-ACT---------GTTT--TTCTTTACAAAA--TTTAATTTCTTT------TCGTTTTT-GGTGTACCCT------------TTTGGCTCTTGCGT-GAA-------ATTATTA----------TTTTGCATGATGT------TACCC-----------------------GGT--TACCCCTTATCAGGAGTACCACGCCCACTTCCTCAAAAACTA---TTCCCGTCATGGGCACGCCTTSizeHit CountTotal NormTotal
No Reads
droAna3
T------CGGCGCCCAGGTCGAGGATTCCACGGCCAGTGAGCTACCCTGCCGGAAGGTCGGTATTTA--A----AGAAT-TAAGT------------------------------------------CTTA----------------------A----------------------------------------------TAT--------------------------------TT-AAAGAA-TTTTAA-ATTATTTATTT-----TGG-AAT---------CATT--TTATTTACAAAAAATATTATTTCTTT------TCGTTTTT-GGTGAACCCT--------------------CTACCCCCAA-------ATTATGA----------TTTTGCATGGTGTTTCCGTTGTTT--TCGTTACGT-TT--------TGGT---CACCCAATTCAGAAGTACTACGCCCACCTCATCGCGAACCG---TCCCTGTGACGGCCACGCCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTACGCCCACCTCATCGCGAAC..........................2611.001100000
.........GCGCCCAGGTCGAGGATTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................TCCACGGCCAGTGAGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACGCCCACCTCATCGCGAACC.........................2611.001100000
.......................GATTCCACGGCCAGTGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................TCCACGGCCAGTGAGCTACCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................GTGAGCTACCCTGCCGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...................................AGTGAGCTACCCTGCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
T------CGGCGCCCAGGTCGAGGATTCCAAGGCCAGTGAGCTACCCAGCAGGAAGGTCAGTATTTC--A----AGAAA-TAATC------------------------------------------AGTG----------------------G----------------------------------------------TAT--------------------------------TT-AAAAATTTTATAA-ATTATTTATTT-----TGG-AAA---------TATT--TTATTTAAAAAA-ATATTATTTCTTT------TCGTTTTT-GGTCAACCT-----------------------TCTTCCAA-------ATTATGA----------TTTTGCATGGTGTTTCCATTGATT--TTGTTACA--TT--------TGGG--CCCTCTTACTCAGAAGTACCACGCCCACCTCATCGCGCACTG---TCCCCGTAATGGCTACGCCCTSizeHit CountTotal NormTotal
No Reads
dp5
T------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCATGATTT------TACGT--T---------T------------------TG--ATACAGAAGTTCCACACCCACATCGACGCGCACAGCGGCCCCTGCGGTGGCCAG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCACATCGACGCGCACAGC.......................2111.0010100000000
droPer2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCATGATTT------TACGT--T---------T------------------T--AATACAGAAGTTCCACACCCACATCGACGCGCACAGCGGCCCCTGCGGTGGCCAG-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACCCACATCGACGCGCACAGC.......................2511.001010000
droWil2
G------CAGCGCAAAGATCACGAATTCCACGGCCAGTGAGCTATCCAGCCGGACGGTAAGTTTTACTCATTAAA-------AATTTGGATAAATTTAATT------------------------------------------------------------------------------------------------------------------------------------------TTATT-TTCAAA-ATTTAAATTTTTTCACTTAAATCTTTATTTTGTGTT--TTGTTT-------------TTCCTTT------TC-----------------------TCT-----CCCTTGTTTCTT-GTTCCTTGGAA--CCTTTTTTGCATTGTTTTGCATGATTATT----TGATT--TCTTT-----AA-----ACTTGGG---C-AG--TGGCAGGAGTTGCATTCCAACGCCAACTCGC--------CCAATTA----GTAGCCCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................AGTGAGCTATCCAGCCGGACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
...................CACGAATTCCACGGCCAGTGAGCTATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT-----AA-----ACTTGGG---C-AG--TGGCAGGA...................................................2411.00100100
...................................AGTGAGCTATCCAGCCGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................CGAATTCCACGGCCAGTGAGCTATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------CCAATTA----GTAGCCCAT1811.00100010
droVir3
TCCAACTCGGCGCAGAAATCGCGTATACCACGGCCAGTCAGCTACCCTGCGGGCAGGTGAGTGAA-------------A-AAA-C------------------------------------------CGTT----------------------G----------------------------------------------TCA--------------------------------GA-AAGCGTTTTGGAA-ATT--TTGTTT-----TGG-AAC---------T------TGTAGCTAAAT--T-TTGTTTCTTT------TTCGTT-C-GG-----------------------CATTTGTGCAC-AAC-------TTTATCA----------TTTTGCATGATTTTT-----TCAC--C-------------------TGGG---TAT----GGCAGAAGTCCGAAGTCAAGTGCC--------AG------CGATCCTTGTCCCGCTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AACTCGGCGCAGAAATCGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000001000000000000000000000000010000000000000000000000000000
.CCAACTCGGCGCAGAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
...................................AGTCAGCTACCCTGCGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
..........CGCAGAAATCGCGTATACCACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGTCAAGTGCC--------AG------CGAT..............2111.001000000000000000000000000000000000000000000000000000000000000010
TCCAACTCGGCGCAGAAATCGCGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTCCGAAGTCAAGTGCC--------..........................2111.001000000000000010000000000000000000000000000000000000000000000000
......................GTATACCACGGCCAGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
........GGCGCAGAAATCGCGTATACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TT-----TGG-AAC---------T------TGTAGCTAAAT--T-TTGTTC.........................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
........................ATACCACGGCCAGTCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CGATCCTTGTCCCGCT..1811.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
T------CGGCGCAGAAGTCACGCATCCCACGGCCAGTCAGCTATCCGGCGGGCAGGTGAGTTCGCGTGG---GGGAGA-C-AAA---------CTGAATT------------------------------------------------------------------------------------------------------------------------------------------GGTTT-TTCGAA-ATTATGATTTT-----TGG-AAT---------CTT------TTTGCTAAA--TTTGATTTCTTCTTCTTTTCATTT---GGA----------------------------------ACA-------TTTATCG----------TTTGGCATGATTT------ATGTTT-GTGTTTTGTTTCCGTAAACCC-CG---CCGGGACCACAGAAGTCCGAAGCCAA---------GTGCCG---CCTCGCCTGCGGC--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................T---GGA----------------------------------ACA-------TTTATCG----------TTTGGCATGATT..........................................................................................................2612.002200000
....................................................................................................................................................................................................................................................................................................................................ATTT---GGA----------------------------------ACA-------TTTATCG----------TTTGGCA...............................................................................................................2411.001100000
....................................GTCAGCTATCCGGCGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........................................................GTGAGTTCGCGTGG---GGGAGA-C-...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...............................GGCCAGTCAGCTATCCGGCGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................GTGAGTTCGCGTGG---GGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..................................................................................................................................................................................................................................................................................T---------CTT------TTTGCTAAA--TTTGATTTCTTCT....................................................................................................................................................................................................2611.001100000
.......................................AGCTATCCGGCGGGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
droGri2
T------CGGCGCTAAAGTCACGCATACCACGACCAGTCAGTTATCCAGCCGGCAGGTAAGTCATGATCA------ACATCAAAA---------TCGAATCGACTCAAAATTTATTGTTTATACAT------------------------------------------------------------------------------------------------------------------------------TTTTTTTT-TT-----TTGAA-T---------T-TT--CT-TTTGCTAAA--T-TT--TTGTTT------TCTTTTTTTGGCACAACAA-----------------TTGTTG--T-TCT-------TTTTTTTTTTTGTATGATTTTGCATGA--------------------------------------------CTTAATGACAGAAGTCCGAAGCCTAGTCCGAGC-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:05 PM