ID:

dsi_21356

 Coordinate:

3l:15743201-15743257 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15742868_15743200_-]; exon [3l_15742799_15743200_-]; CDS [3l_15743258_15743344_-]; exon [3l_15743258_15743365_-]; intron [3l_15743201_15743257_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
ATAATCCCATTTACGAGAAGGAATTCAGCACGGTGAACAAGGAACTAAGGGTATGTAGGCCGGGGCAACCTCTCATGAAATCGAGTAAATACTTTCTACTTCTGCAGAAAGAGGACCACAGACACCTCACCCAGTTTATTGCCCATGCCGCCTTGGA
**************************************************...((((((...(((......(((........))).........)))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................TAATCTCCACTTCTGCAGAAAG.............................................. 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................CTAAGGGTATGTAGGCCGGGG............................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................AGGGTATGTAGGCCGGGTTT.......................................................................................... 20 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AAGAGGACCACAGACACC............................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........TACGAGAAGGAATTCAGCACGGTGAACA...................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........TACGAGAAAGAGTTCAGCACCGTGAACA...................................................................................................................... 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................GTCATGAAATCGAGT....................................................................... 15 1 7 0.43 3 2 0 0 0 0 0 0 1 0 0 0
.........................CAGGACGGTGATCATGGAAC................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
..........................AGCACGGTGATCATGGAAGT............................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
..........................AGGACGGTGATCATGGAAC................................................................................................................ 19 3 18 0.11 2 0 0 1 1 0 0 0 0 0 0 0
...................................................................................................TTCTGCACAAAGAGGACG........................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
..............................................AAGGGTACGTAGGCTG............................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................AGTCATGAAATCGAGT....................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AAGGAAAGAGGACCACAGAC.................................. 20 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0
..........................AGGACGGTGAGCATGGAAC................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................GTCATGAAATCGAGTAG..................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1
......................................................GAGGGCCGGGGCAACCGCT.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TATTAGGGTAAATGCTCTTCCTTAAGTCGTGCCACTTGTTCCTTGATTCCCATACATCCGGCCCCGTTGGAGAGTACTTTAGCTCATTTATGAAAGATGAAGACGTCTTTCTCCTGGTGTCTGTGGAGTGGGTCAAATAACGGGTACGGCGGAACCT
**************************************************...((((((...(((......(((........))).........)))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
....................................................................................................AGACGTCTTTCTCCTGGTGTC.................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................GTGTCTGTGGAGTGGGTCA...................... 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTATGAAAGATGAAG....................................................... 15 0 1 1.00 1 0 0 0 1 0 0
.....................TTAAGTCGTGCCACTTGTTCC................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................CTGTGGAGTGGGTCAAATA.................. 19 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................TGGGTCAACTACCGGGTAC.......... 19 2 2 0.50 1 0 1 0 0 0 0
................................................................................................................CCGCGTGTCAGTGGAGTGGGT........................ 21 3 4 0.25 1 0 0 0 0 1 0
............................................................GCCCCGGTGGAGAGT.................................................................................. 15 1 6 0.17 1 0 1 0 0 0 0
...........................GGTGCCCCTTGTTCATTGAT.............................................................................................................. 20 3 12 0.17 2 0 0 0 0 1 1
.........................................................................................................................................AAACGGGTACGGGGGAA... 17 2 20 0.05 1 0 1 0 0 0 0

Generated: 04/23/2015 at 08:09 PM