ID:

dsi_2135

 Coordinate:

3l:16978396-16978545 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.2 -44.0 -44.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAATGCTTTCGATTTCGGCTTTTGGCCGTGTGTTAACAGCTGTCGCCCAGGTGAAGATGCCTCTGCCGACGCCGCTGCCCAAGTGGGCAGATGCTGGGTCCGAGTATATATAGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTTAAACCAACTTAGCTTGGCATCGATCAAATTCAATCGTCCATTGAATTTGATACGATCGGTCGCGTCTTCTCCTTTCCGATCCT
**************************************************.(((.((((((((((((.((............)).))))))..(((((((.((((.............(((.((((......))))))).(((....))).)))))))))))(((((((......)))))))))))))..))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
.................................................................................................................................................................................................................GAATTTGATACGATCGGT....................... 18 0 1 2.00 2 2 0 0 0 0
....................................................................................................................................................................................................................TTTGATACGATCGGTCGCGTCT................ 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................GTCCATTGAATTTGATACGATCG......................... 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................TCCACACTCGACCTAGAAGTTAAACC.............................................................................. 26 0 1 1.00 1 1 0 0 0 0
............................................GCCCAGGTAAAGATGCC............................................................................................................................................................................................. 17 1 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................AATTCAATCGTCCATTGA....................................... 18 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................CGTCCATTGAATTTGATACGATCGGT....................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................GAATTTGATACGATCGGTCGCGT.................. 23 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................TCAAATTCAATCGTCCAT.......................................... 18 0 1 1.00 1 1 0 0 0 0
.......................................................GATGCGTCCGGCGACGCCGCT.............................................................................................................................................................................. 21 3 5 0.20 1 0 1 0 0 0
.....CTTTCGATGTCGGCTTTTC.................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0 0
.................................................................................................................................................................................................AAGTCAATCGTCAATTGA....................................... 18 2 8 0.13 1 0 0 0 1 0
........................GACGTGTTTTAACAGCT................................................................................................................................................................................................................. 17 2 10 0.10 1 0 1 0 0 0
............................................GCCCAGGTAAAGATGTC............................................................................................................................................................................................. 17 2 15 0.07 1 0 1 0 0 0
..................................................................................................................................................................................................ATTCTATCGACCATTGA....................................... 17 2 16 0.06 1 0 0 1 0 0
........................................................................................................................................................................................................................ATACGATGGGACGCTTCTT............... 19 3 18 0.06 1 0 0 0 0 1
.....CCTTCGATTTCGGCT...................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TTTACGAAAGCTAAAGCCGAAAACCGGCACACAATTGTCGACAGCGGGTCCACTTCTACGGAGACGGCTGCGGCGACGGGTTCACCCGTCTACGACCCAGGCTCATATATATCTTTTAGATGTTCAAAACTACGAAATCAACCATAAGGTGTGAGCTGGATCTTCAATTTGGTTGAATCGAACCGTAGCTAGTTTAAGTTAGCAGGTAACTTAAACTATGCTAGCCAGCGCAGAAGAGGAAAGGCTAGGA
**************************************************.(((.((((((((((((.((............)).))))))..(((((((.((((.............(((.((((......))))))).(((....))).)))))))))))(((((((......)))))))))))))..))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................................................GCTGCTAGTTTTAGTTAGCAG............................................. 21 3 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................AGCAGGTAACTTAATC.................................. 16 1 2 0.50 1 0 1 0 0 0
...................................................................................................GGCTTATATATATCTTTTAGG.................................................................................................................................. 21 2 3 0.33 1 0 0 1 0 0
.................................................................................................................................................AAGGTGTGGGCTGGATA........................................................................................ 17 2 10 0.30 3 0 1 0 1 1
........................................ACAGCGGGTCTACTTCTAG............................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................................................................................CTATCCTAGCCAGCG.................... 15 1 4 0.25 1 1 0 0 0 0
..........................................AGCAGGTCCACTTCT................................................................................................................................................................................................. 15 1 19 0.11 2 0 0 2 0 0
.................................................................................................................................................AAGGTGTGGGCTGGA.......................................................................................... 15 1 10 0.10 1 0 0 0 1 0
..................................................................................................................................................AGGTGTGGGCTGGATA........................................................................................ 16 2 20 0.10 2 0 1 0 1 0
.........................................................ACGGCGACGGCTGCGGCGAAG............................................................................................................................................................................ 21 2 13 0.08 1 1 0 0 0 0
..........................................................................................................................................................................................................................TGCAAGCGAGCGCAGA................ 16 2 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................AGTTTAAGTTAGCTG............................................. 15 1 20 0.05 1 1 0 0 0 0
.............................................................AGTCGGCTGCGGCGAAG............................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................ATGCTAGCCCGCGCC.................. 15 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:16978346-16978595 - dsi_2135 AAA-----TGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
droSec2 scaffold_0:9433694-9433943 - AAA-----TGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------AG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
dm3 chr3L:17381950-17382199 - AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
droEre2 scaffold_4784:16466937-16467186 + AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTTC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
droYak3 3L:16686378-16686627 + AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
droEug1 scf7180000409471:2187495-2187745 + AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACTGCGCTGCCCGT----------------------------CTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-
droBia1 scf7180000302428:6752023-6752275 - AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCCGGCGAAG---ATG--------CCT------CTCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-
droTak1 scf7180000415513:75322-75572 - AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCTTG----------------------------GTG----GGCAGATGC------------------------TG----------------------------CG----GTCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-
droEle1 scf7180000490993:302286-302548 - AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCCGGTGAAG---ATG--------CC--------TCTGCC------------GCCGCCGACTGAGACGCCGCTGCCCGG----------------------------ATG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-
droRho1 scf7180000779956:46902-47164 - AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------GGCGCCGACTGAGACGCCGCTGCCCGG----------------------------TTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTCTTCC---TTTTC----CGATCCT-
droFic1 scf7180000454107:935888-936138 - AAA-----CGCTTTCGATT-TCGGC------------------------TC-TTG--GCC---------------------------------G--TC--TGT-GTTAACAGCTGTCGCCCAGGCCAAG---ACG--------CC--------TCTGCC------------A------------ACGTCGCTGCCCAT----------------------------CTG----GGCAGATGC------------------------TG----------------------------CG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTC--C---TTTTC----CGATCCT-
droKik1 scf7180000302474:715515-715764 - AAA-----CGCTTTCGATT-TCGGC------------------------TTTTTG--GCC---------------------------------G------AGT-GTTAACAGCTGTCGCCCAGGTGAAG---ACG--------CC--------GCTGCC------------AGCGCCGA-----------CAG--CGG----------------------------GCG----GGCAGATGC------------------------TG----------------------------CG-----TCCGAGTATATAT----AGAAAATCTACACGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGCCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCACC---TCTTC----C--TCCTC
droAna3 scaffold_13337:8334737-8335001 - T-------CGCTTTTGATTTTCGGC------------------------TT------------------------------------------------------TTAACAGCTGTCGCCCCGTTGAAG---ATG--------CCG------CTCTGCCGCAGCCAGCGTCGCCGTCGAC---GACA-CTCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGACCGAATTGAAT-TTGATACGATCGGTCGCGTCTCCT-TTCTTCTTC----CGATCCA-
droBip1 scf7180000396541:482506-482771 - T-------CGCTTTCGATTTTCGGC------------------------TT------------------------------------------------------TTAACAGCTGTCGCCCAGTTGAAG---ATG--------CCG------CTCTGCCTCAGCTAGCGTTGACGCCGAC---GACA-CTCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGACCGAATTGAAT-TTGATACGATCGGTCGCGTCTCCTCTTCTATTTC----CGATCCA-
dp5 XR_group6:9257751-9258084 + ---------GCTTTCGGTT-TCGACCGCTGCCTTCTTCTCCACCTCTGCTG-TTGCTGCCACTGGTGGTGCCGCTGCTGCTGCGGTCCGGGGCG------AGT-GTTAACAGCTGTCGCCCAAGTGAAGAAGATG--------CC--------TCTGCC------------T------------CTGTCGCTGCCTCTGTCGACGGTGGCGTTGCGGCGTTGCTTTTCG----GGCAGATGG------------------------CG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTG-GGCATCGATC--AAATTCAAT-TGACC--ATTGAATTTTGATACGATCGGTCGCGTCGTCTTC---T-TAG----CCAT----
droPer2 scaffold_35:464821-465103 - T-----------------------------------------------------G--GT-------GGTGCCGCTGCTGCTGCGGTCCGGGGCG------AGT-GTTAACAGCTGTCGCCCAAGTGAAGAAGATG--------CC--------TCTGCC------------T------------CTGTCGCTGCCTCTGTCGACGGTGGCGTTGCGGCGTTGCTTTTCG----GGCAGATGG------------------------CG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTG-GGCATCGATC--AAATTCAAT-TGACC--ATTGAATTTTGATACGATCGGTCGCGTCGTCTTC---T-TAG----CCAT----
droWil2 scf2_1100000004511:9795123-9795391 + AAAAAAAAAG-----------CGGC------------------------TT-TCG--GCCA----------------------AGTCCAAGCCGAGTCCAAGTGGTTAACAGCTGTCGCCCAA---AAG---TTGCCAAGTTGCCGCAAAGTCTCTGCC------------G------------CTGTCGCTGTCATC----------------------------GTC----GGCAGATG--------------------------------------------------------GTCCGGAGGTAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATCCCACACTCGACCTAGAAGTTTAAATAAACCAACCAACAAA---AGTTTGGGCATCGATC--AAATTCAATTTGACC--ATTGAATTTTGATACGATCGGTCG------------------------------
droVir3 scaffold_13049:5904726-5904950 + -----------------------------------------------------------C---------------------------------G------AGT-GTTAACAGCTGTCGCCCAAGTCG-----T-----------C--------GCAG------------------------------------------------------------------------CAGCAGCAGCAGCAGC---A------GCAGCTAA---AG---------CAGCAGCGGCCGATCCGACGC-----CCCGAGTATATATAAGTAGAGAATCTACAAGTTTTGATGCTTTAGTTGCTAGCCCAGTGTCGACCCAGAAGTT-----GAAGCAACT-----TTTTTGCTT-GGCATCGATCAAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCGTACACA----------------------------
droMoj3 scaffold_6680:4237596-4237859 + -----------------------------------------------------------C---------------------------------G------AGT-GTTAACAGCTGTCGCCCAGGTCG-----TCG--TCG---TC-----------GTC------------G------------TCGTCGCCGC---A----------------------------G--CAGCAGCAGAAGCGGC---A------GCAGCAAC---TG---------CGACAGCGTTGGATCTGACGC-----CCCGAGTATATATAAGTAGAGAATCCACAAGTTTTGATGCTTTAGTTGCTAGCCCAGAGTCGACCCAGAAGTT-----GAGGCAATT-----TTTTTGCTC-AGCATCGATCCAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCGAC-ACA--TTCAAG---GATTATACACGAAACA-
droGri2 scaffold_15110:13183851-13184087 - -----------------------------------------------------------C---------------------------------G------AAT-GTTAACAGCTGTCGCCCAAGTCGA-----TT--TTGTCGCC--------GCAG------------------------------------------------------------------------CAGCAGCAGCAGCAGCGGCAGCACCAGCAGCAGAAGCCGCCGCCGCCGCAGCAGCGGTTTATTTAACGC-----CCCGAGTATATATAAGTAGAGAATCTTCAACTTTTGATGCTTTAGTTGCTAGCCCA------------GTGTT-----GAGGCAACT-----TTTCTGCTT-GGCATCGATCAAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCG----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAA-----TGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT-TTGATACGATCGGT................................1812.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGATACGATCGGTCGCGTCT.........................2211.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCC--ATTGAAT-TTGATACGATCG..................................2311.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCCACACTCGACCTAGAAGTT-----AAACC......................................................................................................2611.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAAT-CGTCC--ATTGA.................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCC--ATTGAAT-TTGATACGATCGGT................................2611.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT-TTGATACGATCGGTCGCGT...........................2311.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TC--AAATTCAAT-CGTCC--AT....................................................1811.00100100000000000000
droSec2
AAA-----TGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------AG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAT-TTGATACGATC...................................1811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGTCC--ATTGAAT-TTGATACG......................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................CT-----T---AGCTT-GGCATCGATC--.......................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATTGAAT-TTGATACGATCGGT................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................TCCACACTCGACCTAGAAGT.................................................................................................................2011.0010010
............................................................................................................................................................................................................................................................................................................................................................................GACCTAGAAGTT-----AAACCAAC...................................................................................................2011.0010010
dm3
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATTCA................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATT..................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CCACACTCGACCTAGAAGTT-----A..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT-----T---AGCTT-GGCATCGATC--AAAT...................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-CGTCC--ATTGAAT-TTG...........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GCTTTAGTTGGTATTCCAC................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCGATC--AAATTCAAT-CG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATTGAAT-TTGATACGAT....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CTTTAGTTGGTATTCCAC................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT-----T---AGCTT-GGCATCGATC--AAA....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCC--ATTGAAT-TTGATACGATCG..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGTCGCGTCTTCTCC---T-TTC----C.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TATTCCACACTCGACCTAGAA...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAT-TTGATACGATCG..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT-TTGATACGATCGGTCGCG............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CACACTCGACCTAGAAGTT-----...........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATTCAAT-.............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GGTATTCCACACTCGACCTA......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACACTCGACCTAGAAGTT-----AAACC......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTT-GGCATCGATC--AAATT..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCTAGAA...................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTTC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................AAACCAACT-----T---AGCTT-GGCATC.............................................................................2113.0030300000
...........................................................................................................................................................................................................................................................................................................................................................................................................T---AGCTT-GGCATCGATC--AAA....................................................................1912.0020002000
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGAAGTT-----AAAC.......................................................................................................2711.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................ACCAACT-----T---AGCTT-GGCATCGATC--AAATTC.................................................................2911.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TC--ATTGAAT-TTGATACGATC...................................2011.0010100000
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGAA...................................................................................................................2011.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................CTCGACCTAGAAGTT-----AAACCAACT-----T---.........................................................................................2511.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................T-----AAACCAACT-----T---AGCTT-GGCATCGAT..........................................................................2511.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAT-TTGATACGATCGGTCGC.............................2411.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................AAACCAACT-----T---AGCTT-GGCATCGATC--A......................................................................2611.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGATACGATCGGTCGCGT...........................2011.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................AACT-----T---AGCTT-GGCATCGATC--AAATT..................................................................2511.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACT-----T---AGCTT-GGCATCGATC--.......................................................................2111.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT-----T---AGCTT-GGCATCGATC--AA.....................................................................2111.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................CGACCTAGAAGTT-----AAACCAAC...................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................TGGTATTCCACACTCGACCTAGAA...................................................................................................................2411.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................CGACCTAGAAGTT-----AAACCAACT-----T---AGCT.....................................................................................2711.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-CGTTC--ATTGAAT-TTGATACGAC....................................2511.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGTCGCGTCTTCTCC---T-TTC----CGAT....2711.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TTGATACGATCGGTCGCGT...........................2211.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................T-----T---AGCTT-GGCATCGATC--AAA....................................................................2011.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................T-----AAACCAACT-----T---AGCTT-GGCATC.............................................................................2211.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................AACT-----T---AGCTT-GGCATCGATC--AAA....................................................................2311.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGTCGCGTCTTCTCC---T-TTC----C.......2411.0010100000
................................................................................................................................................................................................................................................................................................................................................................TATTCCACACTCGACCTAGAAG..................................................................................................................2211.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCTTCTCC---T-TTC----CGATC...2111.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATTGAAT-TTGATACGATCGGTC...............................2311.0010001000
droYak3
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCT.......................................................................................................................1811.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGTCGCGTCTTCTCC---T-TTC----C.......2411.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCC.......................................................................................................................1811.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATT..................................................................1911.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCTAGAA...................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAT-TTGATACGATCGGTC...............................2211.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................AACCAACT-----T---AGCTT-GGCATC.............................................................................2011.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAT-CGTCC--ATTGAAT-TTGATACGAT....................................2711.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAT-TTGATACGATCGGTCGCGTCC.........................2811.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TTGATACGATCGGTCGC.............................2011.00100100000000
............................................................................................................................................................................................................................................................................................................................................................TTGGTATTCCACACTCGACC........................................................................................................................2011.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATC--AAATTCAAT-CGTCC--ATTGAA................................................2711.00100100000000
droEug1
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACTGCGCTGCCCGT----------------------------CTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droBia1
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCCGGCGAAG---ATG--------CCT------CTCTGCC------------G------------ACGCCGCTGCCCAA----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droTak1
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------G------------ACGCCGCTGCCTTG----------------------------GTG----GGCAGATGC------------------------TG----------------------------CG----GTCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---T-TTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droEle1
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCCGGTGAAG---ATG--------CC--------TCTGCC------------GCCGCCGACTGAGACGCCGCTGCCCGG----------------------------ATG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCTCC---TTTTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droRho1
AAA-----CGCTTTCGATT-TCGGC------------------------TT-TTG--GCC---------------------------------G------TGT-GTTAACAGCTGTCGCCCAGGTGAAG---ATG--------CC--------TCTGCC------------GGCGCCGACTGAGACGCCGCTGCCCGG----------------------------TTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTCTTCC---TTTTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droFic1
AAA-----CGCTTTCGATT-TCGGC------------------------TC-TTG--GCC---------------------------------G--TC--TGT-GTTAACAGCTGTCGCCCAGGCCAAG---ACG--------CC--------TCTGCC------------A------------ACGTCGCTGCCCAT----------------------------CTG----GGCAGATGC------------------------TG----------------------------CG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGTCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTC--C---TTTTC----CGATCCT-SizeHit CountTotal NormTotal
No Reads
droKik1
AAA-----CGCTTTCGATT-TCGGC------------------------TTTTTG--GCC---------------------------------G------AGT-GTTAACAGCTGTCGCCCAGGTGAAG---ACG--------CC--------GCTGCC------------AGCGCCGA-----------CAG--CGG----------------------------GCG----GGCAGATGC------------------------TG----------------------------CG-----TCCGAGTATATAT----AGAAAATCTACACGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGCCC--ATTGAAT-TTGATACGATCGGTCGCGTCTTCACC---TCTTC----C--TCCTCSizeHit CountTotal NormTotal
No Reads
droAna3
T-------CGCTTTTGATTTTCGGC------------------------TT------------------------------------------------------TTAACAGCTGTCGCCCCGTTGAAG---ATG--------CCG------CTCTGCCGCAGCCAGCGTCGCCGTCGAC---GACA-CTCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGACCGAATTGAAT-TTGATACGATCGGTCGCGTCTCCT-TTCTTCTTC----CGATCCA-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATTC.................................................................2012.002011000
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGAAGTT-----...........................................................................................................2312.002011000
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCTAGAAGTT-----...........................................................................................................2512.002020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGGTCGCGTCTCCT-TT...................2312.002020000
..........CTTTTGATTTTCGGC------------------------TT------------------------------------------------------TTAAC..........................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGGTCGCGTCTCCT-TTCTT................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................AAACCAACT-----T---AGCTT-GGCATCGATC--AAAT...................................................................2911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCTCCT-TTCTTCTTC----CGATCC..2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGAATTGAAT-TTGATACGATC...................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCGGTCGCGTCTCCT-TTCTTCT..............2811.001010000
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGAA...................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGA....................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-GGCATCGATC--AAATT..................................................................1911.001001000
..........................................................................................................................................................................................................................................................................................................................................................AGTTGGTATTCCACACTCGACCT.......................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTT-GGCATCGATC--AAATTCA................................................................2211.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGATCGGTCGCGTCTCCT-.....................2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................................CACTCGACCTAGAAGTT-----AAACCAAC...................................................................................................2511.001010000
..............................................................................................................................................................................................................................................................................................................................................................GGTATTCCACACTCGACCTAGA....................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGAAT-TTGATACGATCGGTCGC.............................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATCGGTCGCGTCTCCT-.....................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................CCAACT-----T---AGCTT-GGCATCGATC--AAATTC.................................................................2811.001010000
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCACACTCGACCTAGAA...................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT-----T---AGCTT-GGCATCGATC--AAATTC.................................................................2511.001010000
..............................................................................................................................................................................................................................................................................................................................................................................CCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGC................................................................................2811.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCGGTCGCGTCTCCT-TTCTTC...............2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAT-CGACCGAATTGA.................................................1911.001010000
droBip1
T-------CGCTTTCGATTTTCGGC------------------------TT------------------------------------------------------TTAACAGCTGTCGCCCAGTTGAAG---ATG--------CCG------CTCTGCCTCAGCTAGCGTTGACGCCGAC---GACA-CTCTGCCCAG----------------------------GTG----GGCAGATGC------------------------TG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTT-GGCATCGATC--AAATTCAAT-CGACCGAATTGAAT-TTGATACGATCGGTCGCGTCTCCTCTTCTATTTC----CGATCCA-SizeHit CountTotal NormTotal
No Reads
dp5
---------GCTTTCGGTT-TCGACCGCTGCCTTCTTCTCCACCTCTGCTG-TTGCTGCCACTGGTGGTGCCGCTGCTGCTGCGGTCCGGGGCG------AGT-GTTAACAGCTGTCGCCCAAGTGAAGAAGATG--------CC--------TCTGCC------------T------------CTGTCGCTGCCTCTGTCGACGGTGGCGTTGCGGCGTTGCTTTTCG----GGCAGATGG------------------------CG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTG-GGCATCGATC--AAATTCAAT-TGACC--ATTGAATTTTGATACGATCGGTCGCGTCGTCTTC---T-TAG----CCAT----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTCGACCTAGAAGT.................................................................................................................2211.0010000100000
droPer2
T-----------------------------------------------------G--GT-------GGTGCCGCTGCTGCTGCGGTCCGGGGCG------AGT-GTTAACAGCTGTCGCCCAAGTGAAGAAGATG--------CC--------TCTGCC------------T------------CTGTCGCTGCCTCTGTCGACGGTGGCGTTGCGGCGTTGCTTTTCG----GGCAGATGG------------------------CG----------------------------GG-----TCCGAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATTCCACACTCGACCTAGAAGTT-----AAACCAACT-----T---AGCTG-GGCATCGATC--AAATTCAAT-TGACC--ATTGAATTTTGATACGATCGGTCGCGTCGTCTTC---T-TAG----CCAT----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTGATACGATCGGTCGCGTC..........................2513.003300000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CC--ATTGAATTTTGATACGATC...................................2112.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTTGATACGATCGGTCGCGTC..........................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................GTT-----AAACCAACT-----T---AGCTG-GGCATC.............................................................................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATTGAATTTTGATACGAT....................................1911.001100000
droWil2
AAAAAAAAAG-----------CGGC------------------------TT-TCG--GCCA----------------------AGTCCAAGCCGAGTCCAAGTGGTTAACAGCTGTCGCCCAA---AAG---TTGCCAAGTTGCCGCAAAGTCTCTGCC------------G------------CTGTCGCTGTCATC----------------------------GTC----GGCAGATG--------------------------------------------------------GTCCGGAGGTAGTATATAT----AGAAAATCTACAAGTTTTGATGCTTTAGTTGGTATCCCACACTCGACCTAGAAGTTTAAATAAACCAACCAACAAA---AGTTTGGGCATCGATC--AAATTCAATTTGACC--ATTGAATTTTGATACGATCGGTCG------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGATACGATCGGTC...............................1812.00200020
.................................................................................................................................................................................................................................................................................................................................................................ATCCCACACTCGACCTAGAAGC.................................................................................................................2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGCATCGATC--AAA....................................................................1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................CCTAGAAGTTTAAATAAACCAACC..................................................................................................2411.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................AACAAA---AGTTTGGGCATCGATC--AAATT..................................................................2711.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATTGAATTTTGATACGATCGGTC...............................2411.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTGATACGATCGGT................................1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTGATACGATCGGTC...............................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................AA---AGTTTGGGCATCGATC--AAA....................................................................2111.00100010
droVir3
-----------------------------------------------------------C---------------------------------G------AGT-GTTAACAGCTGTCGCCCAAGTCG-----T-----------C--------GCAG------------------------------------------------------------------------CAGCAGCAGCAGCAGC---A------GCAGCTAA---AG---------CAGCAGCGGCCGATCCGACGC-----CCCGAGTATATATAAGTAGAGAATCTACAAGTTTTGATGCTTTAGTTGCTAGCCCAGTGTCGACCCAGAAGTT-----GAAGCAACT-----TTTTTGCTT-GGCATCGATCAAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCGTACACA----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................TAACAGCTGTCGCCCAAGTCG-----T-----------C--------G..............................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................G---------CAGCAGCGGCCGATCCGACGC-----.........................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACT-----TTTTTGCTT-GGCATCGA...........................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGATGCTTTAGTTGCTAGCCCAGTG..............................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCGATCAAAAATTCAAT-TGACC--......................................................2611.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCAGAAGTT-----GAAGCAACT-----TTTTTGCTT-GGCATCGAT..........................................................................3611.001000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................CCAGTGTCGACCCAGAAGTT-----GAAG.......................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACT-----TTTTTGCTT-GGCATCGATC.........................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAACT-----TTTTTGCTT-GGCATCGATCAAA......................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................GT-GTTAACAGCTGTCGCCCAAGTC..........................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................AGCAGCAGCAGC---A------GCAGCT...................................................................................................................................................................................................................................19200.153003000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GCAG------------------------------------------------------------------------CAGCAGCAGCAGCAGC---A------GCAGC....................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
-----------------------------------------------------------C---------------------------------G------AGT-GTTAACAGCTGTCGCCCAGGTCG-----TCG--TCG---TC-----------GTC------------G------------TCGTCGCCGC---A----------------------------G--CAGCAGCAGAAGCGGC---A------GCAGCAAC---TG---------CGACAGCGTTGGATCTGACGC-----CCCGAGTATATATAAGTAGAGAATCCACAAGTTTTGATGCTTTAGTTGCTAGCCCAGAGTCGACCCAGAAGTT-----GAGGCAATT-----TTTTTGCTC-AGCATCGATCCAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCGAC-ACA--TTCAAG---GATTATACACGAAACA-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................CGACCCAGAAGTT-----GAGGC......................................................................................................1811.001000010
............................................................................................................................................................................................................................................................................................................................................................TTGCTAGCCCAGAGTCGACCC.......................................................................................................................2111.001000010
droGri2
-----------------------------------------------------------C---------------------------------G------AAT-GTTAACAGCTGTCGCCCAAGTCGA-----TT--TTGTCGCC--------GCAG------------------------------------------------------------------------CAGCAGCAGCAGCAGCGGCAGCACCAGCAGCAGAAGCCGCCGCCGCCGCAGCAGCGGTTTATTTAACGC-----CCCGAGTATATATAAGTAGAGAATCTTCAACTTTTGATGCTTTAGTTGCTAGCCCA------------GTGTT-----GAGGCAACT-----TTTCTGCTT-GGCATCGATCAAAAATTCAAT-TGACC--ATTGAATTTTGATACGATCG----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:52 AM