ID:

dsi_21320

 Coordinate:

3r:4374068-4374217 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4374218_4374413_-]; exon [3r_4374218_4374413_-]; intron [3r_4373675_4374217_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACGACTGCAAGGAAGACCGCAGATCTCTGCCGGACAGTAACGAAAACAGGTGAGCGGCGCCAACTCAACTGGGAAGTCAAAAAGAAAGTTGAACCCACTGCGTGCAGTTGTGCAAACAAGTCAGGGGTGTAGAGCGGATCGAAACCGCTTTCTGAATTATTTCCTAGGTGCTATTTAAAAAGAATTATCGTGTTTATTATCAAAGTAGAAATTAAAGATATGAACCCAAGAATTCCGTCATATAAAAGT
**************************************************.(((...((((.....((.(((((((((.....(((((((........((((.((((.((.((.........)).)).))))..)))).........))))))).....))))))))).))...................))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M053
female body
............................................................................................................................................................................TATTTAAAGAGAATCATTGTGT........................................................ 22 3 2 1.00 2 2 0 0 0 0 0 0 0
....................CAGATCTCTGCCGGACAGTAACGAAAACA......................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...GACTGCAAGGAAGACCGCAGATCTCTGCC.......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................TAAACAAGTCAGGGGTGAACA.................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0
.......................................................................................................................AGTATGGGGTGTAGAGC.................................................................................................................. 17 2 8 0.25 2 1 0 0 0 1 0 0 0
...................................................................................................................................AGGGCGGATCGAAAC........................................................................................................ 15 1 5 0.20 1 0 0 0 1 0 0 0 0
........................................................................................................................GTATGGGGTGTAGAGC.................................................................................................................. 16 2 20 0.20 4 0 1 0 0 3 0 0 0
................................................................................................................GCAAACGAGTCTGGGTTGTA...................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
................................................................................................................................................ACCGCTTTCTGTAGTAT......................................................................................... 17 2 12 0.17 2 0 0 0 0 0 2 0 0
.......................................................................GGGAAGTAAAAAAGAAAGGGG.............................................................................................................................................................. 21 3 14 0.14 2 0 0 0 0 0 0 2 0
.............................................................................................ACCCACTGCGTGAAGCT............................................................................................................................................ 17 2 9 0.11 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................TTGAAGTAGAAATTAAAGA............................... 19 2 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................................................GTACGGGGTGTAGAGC.................................................................................................................. 16 2 17 0.06 1 0 0 0 0 1 0 0 0
..........................................................CGCCAGCTCAACTGGCA............................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................AGTAGAAATTAATGATTT............................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGCTGACGTTCCTTCTGGCGTCTAGAGACGGCCTGTCATTGCTTTTGTCCACTCGCCGCGGTTGAGTTGACCCTTCAGTTTTTCTTTCAACTTGGGTGACGCACGTCAACACGTTTGTTCAGTCCCCACATCTCGCCTAGCTTTGGCGAAAGACTTAATAAAGGATCCACGATAAATTTTTCTTAATAGCACAAATAATAGTTTCATCTTTAATTTCTATACTTGGGTTCTTAAGGCAGTATATTTTCA
**************************************************.(((...((((.....((.(((((((((.....(((((((........((((.((((.((.((.........)).)).))))..)))).........))))))).....))))))))).))...................))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................CGTAAGACGTAATAAAGGAG................................................................................... 20 3 14 0.07 1 1 0 0
.......................................................................................................................TCAGTGCCCACGTCTCACCT............................................................................................................... 20 3 20 0.05 1 0 1 0
..................................................................................................................TTTGTTAAGGCCCCAC........................................................................................................................ 16 2 20 0.05 1 0 0 1

Generated: 04/24/2015 at 04:51 AM