ID:

dsi_2132

 Coordinate:

3l:8198295-8198353 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.7 -11.4

Flybase annnotation

exon [3l_8197732_8198294_+]; CDS [3l_8197732_8198294_+]; CDS [3l_8198354_8199583_+]; exon [3l_8198354_8199897_+]; intron [3l_8198295_8198353_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
CTCAGTATCTCTACGACAATGGATGGTTCGAACTGGCGGGCTATAATAAGGTGAGACTGGTACATGATATGGAAAGACTTGTGATTTCTTATCCACATCCTGTCCCCAGGTGGACGACAATACATTTCCAAATATCATGGCTGTGGTCACCGGCTACAA
*********************************************************.((.(((.(((.((((((((.........)))).)))).))).))).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.........TCTACGACAATGGATGGTTCGAACTGGC.......................................................................................................................... 28 0 1 10.00 10 5 0 5 0 0 0 0 0 0 0
.......TCTCTACGACAATGGATGGTTCGAAC.............................................................................................................................. 26 0 1 6.00 6 4 0 1 0 1 0 0 0 0 0
..............................................................................................................................TCCAAATATCATGGCTGTGGTCACCGGC..... 28 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0
..............................................................................................................................TCCAAATATCATGGCTGTGGTCACCGG...... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................TGGTACATGATATGGAAAGAC................................................................................. 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0
.TCAGTATCTCTACGACAATGGATGGT.................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................ATGGATGGTTCGAACTGGCGG........................................................................................................................ 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
...........TACGACAATGGATGGTTCGAACTGGCGGGC...................................................................................................................... 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................TATGGAAAGACTTGTGATTTC....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........CTACGACAATGGATGGTTCGAACTGGC.......................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....TATGTCTACGACAATGGATGGTTCGA................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................TCGAACTGGCGGGCTATAATAAA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.TCAGTATCTCTACGACAATGGATGGTT................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.TCAGTATCTCTACGACAATGGATGGTTCGA................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................CTTATCCACATCCTGTCCCCAG.................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............GACAATGGATGGTTCGAACTGGCGGGC...................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................ATCATGGCTGTGGTCACC........ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................TTCGAACTGGCGGGCTATAATAAGG............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................TGGCGGGCTATAATAAGGTGGA........................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........TCTACGACAATGGATGGTTCGAACTGG........................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........TCTACGACAATGGATGGTTCGAACTG............................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................TGGTTCGAACTGGCGGGCAA.................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..........................TTCGAACTGGCGGGCTATAATAAGGT........................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............ACGACAATGGATGTGTCAAA............................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................TCATGGCTGTCGTCA.......... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................TAATATCATGACTGTGGTA........... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGTCATAGAGATGCTGTTACCTACCAAGCTTGACCGCCCGATATTATTCCACTCTGACCATGTACTATACCTTTCTGAACACTAAAGAATAGGTGTAGGACAGGGGTCCACCTGCTGTTATGTAAAGGTTTATAGTACCGACACCAGTGGCCGATGTT
**************************************************.((.(((.(((.((((((((.........)))).)))).))).))).))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
......................................................................................................AGGGGTCCACCTGCTGTTATG.................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................TAGGTGTAGGGCAGGGGTCCA................................................ 21 1 1 1.00 1 1 0 0 0 0
.....................................................................................................CGGGGGTCCACCTGCT.......................................... 16 1 3 0.33 1 1 0 0 0 0
..................................................................................................................GCTGTTACGCAAAGGTTTGT......................... 20 3 13 0.31 4 0 0 4 0 0
................................GACCGCCCGCTATTATT.............................................................................................................. 17 1 4 0.25 1 0 0 1 0 0
...............................................................................................................CCTGCTGCTATGTAACGG.............................. 18 2 4 0.25 1 0 1 0 0 0
..................................................................................................................GCTGTTACGCAAAGGTTT........................... 18 2 5 0.20 1 0 0 1 0 0
.....ATAGAGATGCTGCTA........................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0
.....................CTACCAAGCTCGGCCGC......................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1
.................................................................................................................GGCTGTTACGCAAAGGTTT........................... 19 3 20 0.10 2 0 0 2 0 0
...........................................................................................................TCCACCTGCTGTTTCGTAG................................. 19 3 15 0.07 1 0 0 1 0 0
..................................................CGCTCTGACCATGGAC............................................................................................. 16 2 20 0.05 1 0 0 0 0 1
......................TTCCAAGCTTGAACGC......................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:44 AM