dsi_21319

CDS [x_11103650_11107053_+]; three_prime_UTR [x_11107054_11108468_+]; exon [x_11103650_11108468_+]

######################################################################################################################################################################################################################################## CAACTGCATCTCTGCCCGCTGCCGGTGGCGTTACCTCTGTGGGATTGGCCGTAGGCGTGGCCAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCGACAGGATGGAGCACCCACTGCCCATGCGCTCCAACAACAGCAGCAGCAGCAGGC *******************************************************************((((((((((......(((((((..((((..(((.((((...........)))).))))).)).)))))))......)))))))).))..***********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	GSM343915 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.....................................................................CGAGTGCCACAAAGAAGAAGAC.............................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0
...CTGCATCTCTGCCCGCTGCCGGTGG............................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................GTAGGCGTGGCCAGCCCACCGAGTGCC...........................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................GTTACCTCTGTGGGATTGGC.......................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0
......CATCTCTGCCCGCTGCCGGTGGC...........................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................CTTTAGCCTGGTGGTGCTGTGGC.........................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................GTACGCCGCCAATCGACAG..................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................GCCAATCGACAGGATGGA............................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
................................................................................................GCCGGAAGAGATAAGAATT.....................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................TGGGATCTATTTGCTGTGCG.................................................................................................	20	3	5	0.60	3	0	0	0	0	2	0	0	1	0
.AACTGCATCTCTTCCGGCTGG..................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	1	0	0	0
............................................................................................TAGCGCCGGAAGAGA.............................................................................................................................	15	1	4	0.25	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................AACAACAGCATCGGCAGCAGGC	22	2	11	0.09	1	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................CCAACAACAGCAGCAGCAGC....	20	0	11	0.09	1	0	1	0	0	0	0	0	0	0
........................................................................................GTCGAAGCGCCGGGAG................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0
............................................TTGCCCGTAGGCTTGACCA.........................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................AACAGCAGCAGCAGCA...	16	0	20	0.05	1	0	0	0	0	0	0	0	0	1

GTTGACGTAGAGACGGGCGACGGCCACCGCAATGGAGACACCCTAACCGGCATCCGCACCGGTCGGGTGGCTCACGGTGTTTCTTCTTCTGCTTCGCGGCCTTCTCTATTCTTAATCGCTAGACAAACGACACGCAGAAATCGGACCACCACGACACCGTAGACATGCGGCGGTTAGCTGTCCTACCTCGTGGGTGACGGGTACGCGAGGTTGTTGTCGTCGTCGTCGTCCG ***********************************************************************((((((((((......(((((((..((((..(((.((((...........)))).))))).)).)))))))......)))))))).))..*******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
..............................................................................................GGCGGCCTTCTCTCTTCTTA......................................................................................................................	20	2	1	1.00	1	1	0	0
................................................................................................................AAATTGCTAGACAAACGACAT...................................................................................................	21	3	4	0.50	2	0	2	0
............................................................................................................................................................................GTTAGCTGTCGTACC.............................................	15	1	7	0.14	1	1	0	0
.......................................................................................................................................................CTACAACGTAGGCATGCGG..............................................................	19	3	10	0.10	1	0	0	1
............................................................................................................................................................................................................GCGAGGTTGTTGACTTCG..........	18	2	20	0.05	1	1	0	0
............................................................................................................................................................................................................GCGAGGTTGTTGACTTC...........	17	2	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:11106944-11107175 +	dsi_21319	CAACTGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAACA------------GCAGCAGCAGCAG-----------------------GC
droSec2	scaffold_36:400324-400555 +		CAACTGCATCTTTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAACA------------GCAGCAGCAGCAG-----------------------CC
dm3	chrX:11726848-11727079 +		CAGCAGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GCAGCAGCAGCAG-----------------------CA
droEre2	scaffold_4690:3469532-3469766 -		CCCCTGCAACTCAAC--------------CC---GCTG---CCGGAGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGCGTTGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGTCGAAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGTCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GCAGCAACCGCAA------CAG--------------CC
droYak3	X:14972203-14972422 -		CACCTGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------CACCTCTGTG-GGATTG------GGCGTTGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGAAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTCCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GC-----------------------------------A
droEug1	scf7180000409181:66415-66643 +		GTCCAGCATCTTCAC--------------CA---GCCG---CCGGTGGTGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGTGTGGGCGTTGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAACGTCGCAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTATACGC---CAATCG----ACAAGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTTCAACAGCA------------GCAGCAGCAGCAG-----------------------CA
droBia1	scf7180000298389:1532565-1532805 +		CCCCGGCCACTCTGC--------------CC---GCCG---CCGGAGGCGT-----------------------------------------------------------------------------CACCTCTGTG-GGACTG------GGCGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGCCGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGC---CAACCG----ACAGGATGC-----------------------------------------------AGGGGCACCCACTGCCCATGCGCTCCAGCAGCA------------GCAGCAGCCGCAGCAACAGCCG--------------CA
droTak1	scf7180000414375:155848-156070 -		CGACTGCTGCTCTAA--------------AT---GCCG---CCGGCGGC------------------------------------------GGAGG--------------------CG---GAGGCGTTACCTCCG-------------------TGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGTGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGC---CAATCG----GCAGGAC--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAGCAGCA------------GC------AGGAG-----------------------GA
droEle1	scf7180000491277:154829-155060 -		CCTC-----CTCTGCCACGTCCCAAGGCACC---GCCG---CCGGAGGCGT-----------------------------------------------------------------------------AACTTCTGTG-GGATTG------GGCGTGGGCGTGGC---------CAGCCCGCCAAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCACCAATCG----ACAAGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------TC---------AT-----------------------CC
droRho1	scf7180000779914:358505-358729 -		CCTCTGCGTCTCTGC--------------CC---GCCG---CCGGGGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGCGTGGGCATGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAACGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTATGC---CAATCG----ACAGGAC--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGGA------------ACCGCCGGATC---------------------------
droFic1	scf7180000453277:193844-194072 +		CCTCTGGAGGTGCAG--------------CT---ACTG---CGGGT---AT-----------------------------------------------------------------------------CACCTCGGTG-GGCGTGGGCGTTGGTGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTTCTATGGCATCTGTACACCGCCAATCG----ACAGGATGG-----------------------------------------------CGGAGCACCCACTGCCCATGCCCTCCAGCAGGA------------TC---------CA-----------------------GA
droKik1	scf7180000302621:632580-632859 +		CTGCCGCCTCCT--C--------------CA---GCC-------------------------------------TGACCAATGCCGAG--GGAGGCGGTGCCGTTGGTGTCGGAGGCGGTGGCGGCGTCACCTCGG-------------------TGGGCGTGAC---------AAGCCCGCCGAGTGCCACAAAGAAGAAGACAAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTTGTGGTGCTGTGGCACCTGTACGCCGCCAATCG----GGTGGT-CC---AATCCAC-------------------------CGGCGG------CAGTGCACCCACTGCCCATGCCCTACAGCAGT--------------C---------AT------CCGGGTCGGACCGGGTTCC
droAna3	scaffold_13335:778385-778616 +		CCAGTTCATCGCTTC--------------CG---GCCATCGCCGGCAGTGC-----------------------------------------------------------------------------CACCGCCGTG-GGCCTG------GGGGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAAAAGACAAAGCGCCGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTCAGCTTGGTGGTCCTGTGGCATCTGTATGC---GAATCG----GGAGGATCCTCCCGGCCAT--------------------------------------CGGATAGCCTCTGCCCAGGCGCTGCAGCAGT------------------------CG-----------------------CC
droBip1	scf7180000396006:28111-28336 +		CCGGTTCGTCGCTTC--------------CC---GCCGCCCCCGGCACCGT-----------------------------------------------------------------------------TACCGCTGTG-GGCCTG------GGGGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAAAAGACGAAGCGTCGCAATAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTCCAGCTTGGTGGTCCTGTGGCATCTGTATGC---GAATCG----GGAGGATCC---CGGCCAT--------------------------------------CGGATAGCCACCGCCCAGGCGCTGCAGC---------------------------AG-----------------------TC
dp5	XL_group1e:3899170-3899428 -		CGACCGCCTCCAGCT--------------CC---TC------CGTTGTGGG---------------------------------------CCTCCA--------------------TG---TGGGCTC---------CA-CTGTG------GGCATGGGCGTGGC---------CAGTCAGGCGAGTGCCACAAAGAAGAAGACGAAGCGGCGCAAGAGATAAGAATTAGTGATTTGTTTGCTGTGCGTCTTCAGTCTTGTTGTGCTCTGGCATCTGTATGC---AAGCCAGGAGAGAGTGG------------------GAAGTACGAGTATGAGTGCCCGTAGC------AGT---GCCAGTGCCAGTGCCCTCTCCCAGGA------------GCTGCAGGAACAG-----------------------GA
droPer2	scaffold_17:834930-835194 -		CGACCGCCTCCAGCT--------------CC---TC------CGTTGTGGG---------------------------------------CCTCCA--------------------TG---TGGGCTC---------CA-CTGTG------GGCATGGGCGTGGC---------CAGTCAGGCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGTGATTTGTTTGCTGTGCGTCTTCAGTCTTGTTGTGCTCTGGCATCTATATGC---AAGCCAGGAGAGAGTGG------------------GAAGTACGAGTATGAGTGCCCGTAGCAGTGCCAGT---GCCAGTGCCAGTGCCCTCTCCCAGGA------------GCTGCAGGAGCAG-----------------------GA
droWil2	scf2_1100000004963:3654091-3654325 -		CAACTGCATCCGGCG--------------GGCCA---------G-------GAGGAGTCTTGGTGGGGCTCGGTGGTATGCCACTGGGGGGTGGTA--------------------T-----------TGGCAGTGTT-GGCGTC------AGCATGGGCATGGC---------CGGCCAGACGAGTGCCACAAAAAAGAAGACAAAGCGACGAAAAAGATAAGAATTAGCAATTTGTTTGTTGTCTGTCTTTTGTCTCATTGTCATATGGCATTTATATGC---GAATCA----GCA-----------------------------------------------------------------------------------ACA------------GCCGCAACAAGAG------ACT--------------TC
droVir3	scaffold_12932:900714-900987 -		CAACGCCGTCTGTCT--------------CT---GC------CGCAAGTGT---------TGCTGCTGCA-AATAGCACAACACTGGG--CGTGGG--------------------CG---TGGGCGT---------TG-GTGTG------GGCGTGCCCGTTAC---------GGGCCAGCCGAGTGCCACAAAGAAGAAGACAAAGCGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTCTCGTGGTGCTCTGGCATTTATACGC---CGATCCGG---CAACGCCA--AATACGGCCAGGCAACAAC------A---------ACA----------------------ACAGCA---------ACAACAACAACAACAGCAACAACAACAA-----------------------GA
droMoj3	scaffold_6473:652645-652876 +		CACTGGCAACGCCGG--------------CTGCGGCAG---CCAGCGGCGG-----------------------------------------------------------------------CAG---CGCTGCACTG-GGCTTG------GGCGTGGGCGTGGCACAGGTCACGGGCCAGCCGAGTGCCACAAAGAAGAAGACGAAACGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTTTCGTGGTGCTCTGGCATTTGTACGC---CAGTCCGG------------------------------------------------------------------CAACGCCACACGCGGTCAGACAACA------------GCCACAGCCGCAG-----------------------TC
droGri2	scaffold_14853:2067783-2068042 -		CAACAGCAGCAGCAG--------------CTGCA---------A-------CAACATT--------------------TGCCGCTGGCCGCGCCCA--------------------CA---T------TAAG--TTTG-AACATG------GGCGTTGGCGTTGC---------GGTACAGCCGAGTGGCACGAAGAAGAAGACGAAGCGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTCTTGTGGTGCTCTGGCATTTATACGC---CAATCCGGCGGCAGGCA------------------ACAATCCG--GA----------------------AAGATCCGCGTCGCAGCA---------GCAGCAACAGGA---GCAGCAACAACAG------CAA--------------CT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAACTGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAACA------------GCAGCAGCAGCAG-----------------------GC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................CGAGTGCCACAAAGAAGAAGAC......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTGCATCTCTGC--------------CC---GCTG---CCGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTAGGCGTGGC---------CAGCCCACCGAGTGCC....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GC.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......CATCTCTGC--------------CC---GCTG---CCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CTTTAGCCTGGTGGTGCTGTGGC..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GTACGCCGCCAATCG----ACAG.......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GCCAATCG----ACAGGAT--------------------------------------------------GGA...............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCCGGAAGAGATAAGAATT..............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CCAACAACA------------GCAGCAGCAGC...........................	20	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCAGCAGCAGCA..........................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CAACTGCATCTTTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAACA------------GCAGCAGCAGCAG-----------------------CC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................GGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGAT...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................AAGAAGAAGACGAAGCGCCGGAAGAG.......................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................CG----ACAGGAT--------------------------------------------------GGAGCACCCACC......................................................................	21	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................GTGCCACAAAGAAGAAGACGAAGCGC...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..............................C---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-G......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.................................................................................................................................ACCTCTGTG-GGATTG------GCCGTAGGCGT................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................AATCG----ACAGGAT--------------------------------------------------GGAGCACCCAC.......................................................................	23	1	1.00	1	0	0	1	0
............................................................................................................................................GATTG------GCCGTAGGCGTGGC---------CA..................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................ATCTGTACGCCGCCAATCG----A..........................................................................................................................................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................ACGAAGCGCCGGAAGAGAT.....................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................GGAAGAGATAAGAATTAGCGATCTGTT...................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
..........................................................................................................................................................GTAGGCGTGGC---------CAGCCCACCGAG........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................CG----ACAGGAT--------------------------------------------------GGAGCACCCACTGC....................................................................	23	1	1.00	1	0	0	1	0
......................................................................................................................................................................................CGAGTGCCACAAAGAAGAAGACG.....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
....................................TG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGT.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------------GCAGCAGCAGCAG-----------------------..	21	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACA------------GCAGCAGCAGC...........................	18	20	0.05	1	0	0	1	0

dm3

CAGCAGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GCCGTAGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGGAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GCAGCAGCAGCAG-----------------------CA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................TTGCTGTGCGTCTTTAGCCTGGTGGT..........................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GCCAATCG----ACAGGAT--------------------------------------------------GGAGCACC..........................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCGATATGTTTGCTGTGCGTCTTTAGC..................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................ACCTCTGTG-GGATTG------GCCG.......................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................CGGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATT..................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GGTGGCGT-----------------------------------------------------------------------------TACCTCTGTG-G......................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CGTCTTTAGCCTGGTGGTGCTGTGGCA.................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GCTGTGCGTCTTTAGCCTGGTGGTG.........................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCA------------GCAGCAGCAGCA..........................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCA------------GCAGCAGCAGC...........................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------GCAGCAGCAGCA..........................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ACAGCA------------GCAGCAGCAGCAG-----------------------CA	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------GCAGCAGCAGCAG-----------------------..	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCCCTGCAACTCAAC--------------CC---GCTG---CCGGAGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGCGTTGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGTCGAAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGTCTGGTGGTGCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GCAGCAACCGCAA------CAG--------------CC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................CGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCC.........................................................................	28	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................GATTG------GGCGTTGGCGTGGC---------C...................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ATCTGTACGCCGCCAATCG----ACA........................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GTGCGTCTTTAGTCTGGT.............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.......AACTCAAC--------------CC---GCTG---CCGGAGGCGT-----------------------------------------------------------------------------TACC..............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTGCCCATGCGCTCCAAC......................................................	18	1	1.00	1	1	0	0	0	0	0	0
..............................................GGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGAT...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGAATTAGCGATCTGTTTGCTGTGCGT.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................GTCTTTAGTCTGGTGGTGCTGTGGC..................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................CTCTGTG-GGATTG------GGCGTTGG...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCCAACAGCA------------GCAGCAAC..............................	18	10	0.10	1	0	1	0	0	0	0	0

droYak3

CACCTGCATCTCTGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------CACCTCTGTG-GGATTG------GGCGTTGGCGTGGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAGCGCCGAAAGAGATAAGAATTAGCGATCTGTTTGCTGTGCGTCTTTAGCCTGGTGGTCCTGTGGCATCTGTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------GC-----------------------------------A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................AGACGAAGCGCCGAAAGAGATAAGA.................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................TACGCCGCCAATCG----ACAGG......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAGAGATAAGAATTAGCGATCTGTT...................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGAAGACGAAGCGCCGAAA..........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGAATTAGCGATCTGTTTGCTGTGC...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GACGAAGCGCCGAAAGAGATAAG..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................GTTTGCTGTGCGTCTTTAGCCTGGT.............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................CATCTGTACGCCGCCAATCG----A..........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GTACGCCGCCAATCG----ACAGGAT--------------------------------------------------GGA...............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ATTG------GGCGTTGGCGTGGC---------CA..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GGTCCTGTGGCATCTGTACGC........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............TGC--------------CC---GCTG---CCGGTGGCGT-----------------------------------------------------------------------------CACCT.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GTACGCCGCCAATCG----ACAGG......................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GCCGCCAATCG----ACAGGAT--------------------------------------------------GGA...............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................GATTG------GGCGTTGGCGTGGC---------CAGCCCACC...........................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GAAGACGAAGCGCCGAAAGAGATAA...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTCCAGCATCTTCAC--------------CA---GCCG---CCGGTGGTGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGTGTGGGCGTTGC---------CAGCCCACCGAGTGCCACAAAGAAGAAGACGAAACGTCGCAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTATACGC---CAATCG----ACAAGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTTCAACAGCA------------GCAGCAGCAGCAG-----------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCCCGGCCACTCTGC--------------CC---GCCG---CCGGAGGCGT-----------------------------------------------------------------------------CACCTCTGTG-GGACTG------GGCGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGCCGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGC---CAACCG----ACAGGATGC-----------------------------------------------AGGGGCACCCACTGCCCATGCGCTCCAGCAGCA------------GCAGCAGCCGCAGCAACAGCCG--------------CA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGACTGCTGCTCTAA--------------AT---GCCG---CCGGCGGC------------------------------------------GGAGG--------------------CG---GAGGCGTTACCTCCG-------------------TGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGTGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGC---CAATCG----GCAGGAC--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAGCAGCA------------GC------AGGAG-----------------------GA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCTC-----CTCTGCCACGTCCCAAGGCACC---GCCG---CCGGAGGCGT-----------------------------------------------------------------------------AACTTCTGTG-GGATTG------GGCGTGGGCGTGGC---------CAGCCCGCCAAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTACGCCACCAATCG----ACAAGAT--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGCA------------TC---------AT-----------------------CC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCTCTGCGTCTCTGC--------------CC---GCCG---CCGGGGGCGT-----------------------------------------------------------------------------TACCTCTGTG-GGATTG------GGCGTGGGCATGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAACGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCTGTGGCATCTGTATGC---CAATCG----ACAGGAC--------------------------------------------------GGAGCACCCACTGCCCATGCGCTCCAACAGGA------------ACCGCCGGATC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCTCTGGAGGTGCAG--------------CT---ACTG---CGGGT---AT-----------------------------------------------------------------------------CACCTCGGTG-GGCGTGGGCGTTGGTGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTTCTATGGCATCTGTACACCGCCAATCG----ACAGGATGG-----------------------------------------------CGGAGCACCCACTGCCCATGCCCTCCAGCAGGA------------TC---------CA-----------------------GA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGCCGCCTCCT--C--------------CA---GCC-------------------------------------TGACCAATGCCGAG--GGAGGCGGTGCCGTTGGTGTCGGAGGCGGTGGCGGCGTCACCTCGG-------------------TGGGCGTGAC---------AAGCCCGCCGAGTGCCACAAAGAAGAAGACAAAGCGACGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTTAGCCTTGTGGTGCTGTGGCACCTGTACGCCGCCAATCG----GGTGGT-CC---AATCCAC-------------------------CGGCGG------CAGTGCACCCACTGCCCATGCCCTACAGCAGT--------------C---------AT------CCGGGTCGGACCGGGTTCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCAGTTCATCGCTTC--------------CG---GCCATCGCCGGCAGTGC-----------------------------------------------------------------------------CACCGCCGTG-GGCCTG------GGGGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAAAAGACAAAGCGCCGCAAGAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTTCAGCTTGGTGGTCCTGTGGCATCTGTATGC---GAATCG----GGAGGATCCTCCCGGCCAT--------------------------------------CGGATAGCCTCTGCCCAGGCGCTGCAGCAGT------------------------CG-----------------------CC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................CAGCTTGGTGGTCCTGTGGCA.................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GAGGATCCTCCCGGCCAT--------------------------------------CGGATAGCC.........................................................................	27	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................GCCTCTGCCCAGGCGCTGCAGC......................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................G-GGCCTG------GGGGTGGGCGTG...............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................GAGATAAGAATTAGCGATT.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................GACAAAGCGCCGCAAGAGAT.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................GCCACAAAGAAAAAGACAAAG..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................G------GGGGTGGGCGTGGC---------CAG.................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0

droBip1

CCGGTTCGTCGCTTC--------------CC---GCCGCCCCCGGCACCGT-----------------------------------------------------------------------------TACCGCTGTG-GGCCTG------GGGGTGGGCGTGGC---------CAGCCCGCCGAGTGCCACAAAGAAAAAGACGAAGCGTCGCAATAGATAAGAATTAGCGATTTGTTTGCTGTGCGTCTCCAGCTTGGTGGTCCTGTGGCATCTGTATGC---GAATCG----GGAGGATCC---CGGCCAT--------------------------------------CGGATAGCCACCGCCCAGGCGCTGCAGC---------------------------AG-----------------------TC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGACCGCCTCCAGCT--------------CC---TC------CGTTGTGGG---------------------------------------CCTCCA--------------------TG---TGGGCTC---------CA-CTGTG------GGCATGGGCGTGGC---------CAGTCAGGCGAGTGCCACAAAGAAGAAGACGAAGCGGCGCAAGAGATAAGAATTAGTGATTTGTTTGCTGTGCGTCTTCAGTCTTGTTGTGCTCTGGCATCTGTATGC---AAGCCAGGAGAGAGTGG------------------GAAGTACGAGTATGAGTGCCCGTAGC------AGT---GCCAGTGCCAGTGCCCTCTCCCAGGA------------GCTGCAGGAACAG-----------------------GA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................ACGAGTATGAGTGCCCGTAGC------..................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCCACAAAGAAGAAGACGAAGCGGC..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGAGTGCCCGTAGC------AGT---GCCAGTG.....................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................ATCTGTATGC---AAGCCAGGA............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TC---------CA-CTGTG------GGCATGGGC..................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATGGGCGTGGC---------CAGTCAGGCGAG........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TGCCCGTAGC------AGT---GCCAGT......................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGCATCTGTATGC---AAGCCAGG.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCCAGGAGAGAGTGG------------------GAAGT.............................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAAGTACGAGTATGAGTGCCCGT...........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGTGG------------------GAAGTACGAGTATGAGT.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................TTCAGTCTTGTTGTGCTCTGGC..................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGAAGAAGACGAAGCGGC..............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTTGTTTGCTGTGCGTCTTC.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTATGAGTGCCCGTAGC------AGT---GCC.........................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTCTCCCAGGA------------GCTGCAGG..............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATGGGCGTGGC---------CAGTCAGGCGAGTGC.....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CGAAGCGGCGCAAGAGATAAG..................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCCAGGAGAGAGTGG------------------GAAGTACGAGT.......................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGTGG------------------GAAGTACGAGTATGAGTGCCC.............................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTATGC---AAGCCAGGAGAGAGT......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

CGACCGCCTCCAGCT--------------CC---TC------CGTTGTGGG---------------------------------------CCTCCA--------------------TG---TGGGCTC---------CA-CTGTG------GGCATGGGCGTGGC---------CAGTCAGGCGAGTGCCACAAAGAAGAAGACGAAGCGACGCAAGAGATAAGAATTAGTGATTTGTTTGCTGTGCGTCTTCAGTCTTGTTGTGCTCTGGCATCTATATGC---AAGCCAGGAGAGAGTGG------------------GAAGTACGAGTATGAGTGCCCGTAGCAGTGCCAGT---GCCAGTGCCAGTGCCCTCTCCCAGGA------------GCTGCAGGAGCAG-----------------------GA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................CTTCAGTCTTGTTGTGCT.......................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................TCAGTCTTGTTGTGCTCTGGC..................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................CTTCAGTCTTGTTGTGCG.......................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................C---------CA-CTGTG------GGCATGGGCGT................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................GAATTAGTGATTTGTTTGCTGT.............................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................GTGCGTCTTCAGTCTTGTTGTGCTCTGGC..................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................ATCTATATGC---AAGCCAGGA............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................CTTCAGTCTTGTTGTGCTCT.....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................ATTAGTGATTTGTTTGCTGTGCGT.........................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ATTAGTGATTTGTTTGCTGTGCGG.........................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

CAACTGCATCCGGCG--------------GGCCA---------G-------GAGGAGTCTTGGTGGGGCTCGGTGGTATGCCACTGGGGGGTGGTA--------------------T-----------TGGCAGTGTT-GGCGTC------AGCATGGGCATGGC---------CGGCCAGACGAGTGCCACAAAAAAGAAGACAAAGCGACGAAAAAGATAAGAATTAGCAATTTGTTTGTTGTCTGTCTTTTGTCTCATTGTCATATGGCATTTATATGC---GAATCA----GCA-----------------------------------------------------------------------------------ACA------------GCCGCAACAAGAG------ACT--------------TC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................A------------GCCGCAACAAGAG------ACT--------------T.	18	1	1.00	1	0	0	0	1	0
...............................................................................................A--------------------T-----------TGGCAGTGTT-GGCGTC------AGC........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................AAGACAAAGCGACGAAAAAG.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................ATTAGCAATTTGTTTGTTGTCT...........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................CTTGGTGGGGCTCGGTGGTATG..................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................CA----GCA-----------------------------------------------------------------------------------ACA------------GCCGCAACAAGA..........................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................GTGTT-GGCGTC------AGCATGGGC..................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................................A--------------------T-----------TGGCAGTGTT-GGCGTC------A..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................TGTCTGTCTTTTGTCTCATTGTC.........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................CA---------G-------GAGGAGTCTTGGTGGGGCTCGGG........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1

droVir3

CAACGCCGTCTGTCT--------------CT---GC------CGCAAGTGT---------TGCTGCTGCA-AATAGCACAACACTGGG--CGTGGG--------------------CG---TGGGCGT---------TG-GTGTG------GGCGTGCCCGTTAC---------GGGCCAGCCGAGTGCCACAAAGAAGAAGACAAAGCGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTCTCGTGGTGCTCTGGCATTTATACGC---CGATCCGG---CAACGCCA--AATACGGCCAGGCAACAAC------A---------ACA----------------------ACAGCA---------ACAACAACAACAACAGCAACAACAACAA-----------------------GA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........CTGTCT--------------CT---GC------CGCAAGTGT---------......................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ACAAAGAAGAAGACAAAGCGT...............................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ATTTATACGC---CGATCCGG---CAACGCCA--................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCCACAAAGAAGAAGACAAAGCGT...............................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ACGCCA--AATACGGCCAGGCAACAAC------A---------.............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATATGTTTGTTGTGCGTGT.......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................A-AATAGCACAACACTGGG--CGTG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........TGTCT--------------CT---GC------CGCAAGTGT---------TG....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAGTCTCGTGGTGCTCTGGC..................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTGCGTGTTCAGTCTCGT.............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AATAGCACAACACTGGG--CGTGGG--------------------CG---T........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAGCGTCGCAAGAGATAAG..................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAGTCTCGTGGTGCTCTGGCATTTATA...........................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GCA-AATAGCACAACACTGGG--CGTGG...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGTCTGTCT--------------CT---GC------CGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ACAAAGAAGAAGACAAAGCGTCGC............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CACAAAGAAGAAGACAAAGCGTCGCAAGA........................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................GTCGCAAGAGATAAGAATTAGCAAT........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GTCTCGTGGTGCTCTGGC..................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CGTCGCAAGAGATAAGAATTAGCA..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AAGAAGAAGACAAAGCGTCGCAAGAG.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CCAGCCGAGTGCCACAAAGAA............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCGTGGTGCTCTGGCATTTATA...........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTTCAGTCTCGTGGTGCTCTGGC..................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ATACGC---CGATCCGG---CAACGCC...................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CATTTATACGC---CGATCCG..............................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAGCGTCGCAAGAGATAAGAATTAG............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTTCAGTCTCGTGGTGCTCTGG...................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCCGTCTGTCT--------------CT---GC------CGCAAGTGT---------......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AACGCCGTCTGTCT--------------CT---GC------CGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGAAGACAAAGCGTCGCAAGAGATAAG..................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTCTGTCT--------------CT---GC------CGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGACAAAGCGTCGCAAGAGATAAG..................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TCTCGTGGTGCTCTGGCA.................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AACGCCGTCTGTCT--------------CT---GC------CGCA....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GGCCAGGCAACAAC------A---------ACA----------------------ACA.................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................G---TGGGCGT---------TG-GTGTG------GGCGT......................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAACAACA..........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AACAAC------A---------ACA----------------------ACAGCA---------ACA..................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACAACAACAACAACAGCA...................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CA----------------------ACAGCA---------ACAACAACAAC..........................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACTGGCAACGCCGG--------------CTGCGGCAG---CCAGCGGCGG-----------------------------------------------------------------------CAG---CGCTGCACTG-GGCTTG------GGCGTGGGCGTGGCACAGGTCACGGGCCAGCCGAGTGCCACAAAGAAGAAGACGAAACGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTTTCGTGGTGCTCTGGCATTTGTACGC---CAGTCCGG------------------------------------------------------------------CAACGCCACACGCGGTCAGACAACA------------GCCACAGCCGCAG-----------------------TC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................CGCCACACGCGGTCAGACAACA------------GCCA..................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GTTCAGTTTCGTGGTGCTCT.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GACGAAACGTCGCAAGAGATA....................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......CAACGCCGG--------------CTGCGGCAG---CCAGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTTCAGTTTCGTGGTGCTCTGGC..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................GTCAGACAACA------------GCCACAGCCGCAG-----------------------T.	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TACGC---CAGTCCGG------------------------------------------------------------------CAACGCC....................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................ATGTTTGTTGTGCGTGTTCA....................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

CAACAGCAGCAGCAG--------------CTGCA---------A-------CAACATT--------------------TGCCGCTGGCCGCGCCCA--------------------CA---T------TAAG--TTTG-AACATG------GGCGTTGGCGTTGC---------GGTACAGCCGAGTGGCACGAAGAAGAAGACGAAGCGTCGCAAGAGATAAGAATTAGCAATATGTTTGTTGTGCGTGTTCAGTCTTGTGGTGCTCTGGCATTTATACGC---CAATCCGGCGGCAGGCA------------------ACAATCCG--GA----------------------AAGATCCGCGTCGCAGCA---------GCAGCAACAGGA---GCAGCAACAACAG------CAA--------------CT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................GTTGTGCGTGTTCAGTCTTGTG............................................................................................................................................................................	22	1	1.00	1	1	0
.....................................................................................................................A---T------TAAG--TTTG-AACATG------GGCGTTGG...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1
.......................................................ATT--------------------TGCCGCTGGCCGCGCC....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................ATCCGGCGGCAGGCA------------------ACA...............................................................................................................	18	1	1.00	1	1	0
...............................................................................................................................................TG------GGCGTTGGCGTTGC---------GGT.................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................TATACGC---CAATCCGGCGGCAGGCA------------------ACA...............................................................................................................	27	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------GCAGCAACAGGA---GCA...................................	21	9	0.11	1	1	0

dsi_21319

x:11106994-11107125 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.2	-25.1	-24.9