| droSim2 | 
	2l:13079996-13080245 + | 
	dsi_21311 | 
	AATACTGCAACATTT--------CTTCTGATAAAA-CT---GTTTAC-------------ACGAC--------------TTTTAGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------GACATTTTACACTATTTAACACTATT-AAAG--------------TTTAAGTTTTGAGGT---GAAGCCATTGAGAACTTTGCAACGCAGATGTTAAGATCATTATTTATAAAAGA-------------T--------------ATTAATATT-------------TACA----------------TTTGGTTT-AACCCCTCTACAC------TT---GGATACATTTTGCAG-----CTTAGCATTA--------A-AA----TTGTAACAT-----TTGTGTATATTC-----------ATATAGATTAGTCATA | 
	| droSec2 | 
	scaffold_16:1619504-1619753 + | 
	 | 
	AATACTGCAACATTT--------CTTCTGATAAAA-CT---GTTTAC-------------ACGAC--------------TTTTAGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------GACATTTTACTCTATTTAACACTATT-AAAG--------------TTTAAGTTTTGAGGT---GAAGCCATTGAGAACTTTGCAACGCAGATGTTAAGGTCATTATTTATAAAAGA-------------T--------------ATTAATATT-------------TACA----------------TTTGGTTT-AACCCCTCTAAAC------TT---GGATACATTTTGCAG-----CTTAGCATTA--------A-AA----TTGTAACAT-----TTGTGTATATTC-----------ATATGGATTAGTCATA | 
	| dm3 | 
	chr2L:13473606-13473855 + | 
	 | 
	AATACTGCAACATTT--------CTTCTGATAAAA-CT---GTTTAC-------------ACGAC--------------TTTTAGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------GACATTTTGCTCTATTAAACACAATG-AAAG--------------TTTAAGTTTTTAGGT---GAAGCCATTGAGAACTTTGCAACGCAGATGTTAAGGTCATTATCTATAACTAA-------------T--------------ATTAATATT-------------TACA----------------TTTCGTCT-AATCTCTCTACAC------TT---GGATACATTTTGCAG-----CTTAGCATTA--------A-AA----TTGTAACAT-----TTGTGTATATTC-----------ATATGGATTAGTCATA | 
	| droEre2 | 
	scaffold_4929:11974923-11975155 - | 
	 | 
	A-TACTGCAAAATTT--------CTTCTGATAAAA-CT---GTTTAC-------------ATGGG--------------TGAAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTTACTCTATTTAACTGCATT-TTCG--------------TTTATGTTTGGAGGT---AATGCCATTGAGAACTTTGCAACGCAGATGTTTCACTCATTATTTTTAAAA------GTCA-TT--A--------------ATTAATATT-------------T-------------------------------CTCTCTACAC-------T---GGATACATTTTGCAG-----CTTAGCATTA--------A-AG----TTGTAACAT-----TTGTGTATATTC-----------ATATGGATTAGTCATA | 
	| droYak3 | 
	2L:9901912-9902158 + | 
	 | 
	AA--CTGCACCATTT--------CTTCTGATAAAA-CT---GTTTAC-------------ATGAC--------------TTTTACCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------GTCA-----CTTTATTAAACTCTATT-TTAG--------------TTTAAGTTTTAAGGT---AATGCCATTGAGAACTTTGCAACGCAGATGTTTATGTAATTATTTATAAAG------GTCA-CT--A--------------ACTAATATT-------------TACA----------------TTTTATTTTAATCTCTTTACAC-------T---GGATACATTTTGCAG-----CTTAGCATTA--------A-AA----TTGTAACAT-----TTGTGTATACTC-----------ATATGGATTAGTCTTA | 
	| droEug1 | 
	scf7180000409452:61221-61562 + | 
	 | 
	AATACTGCAACATTT--------CCCTTGATAAGA-CCAAAGTTTCCTGCGATGGCTTTCACGAC--------------ATTTAAT--------------------------------------AT----ATACAGG-CATGTTATTTGGAGAAACTAAG----------------ACAATAA----GAAGCCC---------GCATAT---------AAAAC-----------TGATATTCATATTA-----TTTAAATACATATTATTTAAAA--------------AGTAACTATGGAGGG---AAAACCTGAGAGAACTTTGCAATACAGATGGTTAGGTCTTCATTCATATAAATATAAGCAT-TT--T--------------ATTAATATT-------------TCCC----------------TCTTGTTTCCCTCTTCATACAC------TT---GGACACATTTTGCAGCTTTACTTAGCATAT--------A-AA----TTGTAATAT-----TTGTGTATATTC--A--------ATATGGATTAGTCTTA | 
	| droBia1 | 
	scf7180000302408:2880315-2880609 - | 
	 | 
	AGCACTGCAACATTT--------CTCTTGATAAAA-CTTAAGTTTTCTGAAAAGGTTCTCCT-------------AGGCATTTAGT-----------------------------------------------------ATTTCAGTTGGTTTCCTTAAG----------------ATCATAA----ATGGCCC---------TTATATCTCTTAATTATAA-------------------------------------------------ATAA--------------TTCTGTTATATCGGG---AATGCCATTGAAAACTTTGCAATGCTGATGTTTAAGTCTTCATTTTCTTCACA-------T-TTTTT-------------GATTAACATT-------------TCCA----------------TATTATCTC----------CAA------TT---CCACTCACTTTGCAGCGCTGCCTAGCATAT--------A-AA----TTGTAATAT-----TTGTGTATATTC--A--------ATATGGATTAGTCTTA | 
	| droTak1 | 
	scf7180000415858:56383-56676 + | 
	 | 
	AATACTGCAACATTT--------CTCTTGATAAAA-CTAAAGTTTTC-------------GCAACATTTATTCCAAGTTCT------TT--------------------------------GATAT----CTACAAT-ATTATTTTTTGATTTCCCTAAG----------------ATAATAA----AAA---------------------CTAAAATGAAAC-------------------------------------------------AAA--------------ATTATTTACCA--AG---GGAGCCAGTGAGAACTTTGCAATGCAGATGTTTAGGTCTTCATATATATAA------ATAT-TT-GT--------------ATTAATATT-------------TCCC----------------TCTCATTTCCAACTT--------------T---ATACACATTTTGCAGCGCTACTTAGCTTAT--------A-AA----TTGTAATAT-----TTGTGTATATTCTGA--------ATATGGATTAGTCTTA | 
	| droEle1 | 
	scf7180000491338:1082332-1082668 + | 
	 | 
	AATACTGCAACATTT--------CTCTTGATAAAA-CA-AAGTTTTCGGTGATGGTTTTCACAGC--------------ATTTAAT--------------------------------------TT----A---------TCTAAAATTGTATCTTCAAGCTTTGGAAATATTTTGTTAATATTTCTAAAGCCC---------TGGAATA-CTTTT----------ATT-ATACTAAA----------------ATT-------ATTTCTCACAA--------------TTTAAGAATAGAAAG---AGAGCCAGTGAGAACTTTGCAATGCTGATGTTGATACCCATTTTCATTTAA------GCAC-TT--T--------------ATTAACATT-------------TCCC----------------TTCTGTCTCCATCTTTATACAC------AC---TAATTTACTTTTCAGCGCTGCTTAAAAAAT--------A-AA----TTGTAATAT-----TTGTGTATATTT--A--------ATATGGATTAGTCTTA | 
	| droRho1 | 
	scf7180000779550:19858-20183 - | 
	 | 
	AATACTGCAACATTT--------CTCATAATGAAA-CTAAAGTTTTTGGAGATGGTTTACACAAT--------------ATTTTCT--------------------------------------AT----ATATTTTAAATATGAGT--GTATCCTTAAGCTTTGAGAA------------------AAAGTTT---------TGAC------------CAACAAAATT-ATATTA-T----------------ATT-------ATTATTTACGA--------------TATGTATATTGAGGA---AGAGCCTGTGAGAACTTTGCAATACGGATGTTTCTTTCCATTTAAAAGAAA-----AACAC-TT--T--------------ATTAATATT-------------TAAT----------------TTTTGTATCCATCTTTATACAC------TT---TGAACCATTTTCTAGCGCAGCTTAACAAAT--------A-AA----TTGTAATAT-----TTGTGTATATTC--A--------ATATGGATTAGTCTTA | 
	| droFic1 | 
	scf7180000453925:525398-525730 - | 
	 | 
	AATACTGCAACATTT--------TTCCTGATAAAAAGCAAAGTTTTCCGAGATCGTTTGCACGAC--------------ATTTAAC--------------------------------------AA----ACACAGT-AATTTAAGTTTGT--CCCGCAACTT-----A------------------ACACTTTTCTTCTGTATGAC------------CCAATAAATTAAAAATA-T----------------TTTAACAC---TTGGGTAAAA--------------TACTTTTAAGGAGGA---TATGCCTATGAGAACTTTGCAATGCTGATGTTCAGGAATATATATATTT----TTAAGCAA-TT--T--------------AATAATAAC-------------TACC----------------CTTC--TT-CACTTTTATCCAC------TT---GAACACATTTTGCAGCGCTGCTTAGCAAAT--------A-AA----TTGTAATAT-----TTGTGTATATTC--A--------ATATGGATTAGTCCTA | 
	| droKik1 | 
	scf7180000299069:48736-48879 + | 
	 | 
	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCTTGAGAACTTTGCAACTGCGGTGTTTATGTCTTCAAGTT---AACA-------T-ATTTTACTTATAACCATTA---TGCAATC------------ATA-CCTC-T----------T-------------------------------------TTTCTTACAGCG----TTAGCAAAT--------A-AA----TTGTAATAT-----TCGGTGTTAT-C--A--------ATATGCATTAATCTTA | 
	| droAna3 | 
	scaffold_12943:2178459-2178592 + | 
	 | 
	TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGG---TGTGCCATTGAGAACTTTGCAATAACGATGTTTATATCCCAAAGTAACTTA---------------------TATTTATTA---AATAAT------------------------------------------------------------------TTAAACACTTTTCAGGGCTGCA------------------------ATTTAAAAA-----TTGTGTGTATTC--T--------ATGTACATTAATATTA | 
	| droBip1 | 
	scf7180000396728:1115711-1115831 - | 
	 | 
	TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA---GGTGCCATTGAGAACTTTGCAATAACGATGTTTATAACTATAAGTAACATT---------------------TATTTATTA---AATAAT------------------------------------------------------------------TTAAACACTTTTCAGGGCTGCAA----------------------------------------TTTAAAAAC--G--------ATGTACATTAATATTA | 
	| dp5 | 
	4_group1:2079701-2079927 - | 
	 | 
	TT-------------------------------------------------------------------------------TTAGAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTTTGTATTATCTATCACCCTT-TA-GTATATTAACCCATTTACCAGTTTGTTGGG---TGCACCAATGAGAACTTTGCAATGACTACGTTTGGATCTTAACTAATCAAATA-------T-TT--A--------------CTGTATATT-------------ACCC----------------TCTTGTCT------CCCTACAC------TC---TGACACCCTTTGCAGCGCTGCTTAGCTAAT--------A-AA----TTGTAACAT-----TTTTATCCATCG--G--------ATGTACATTAAGCTTA | 
	| droPer2 | 
	scaffold_5:3145685-3145910 + | 
	 | 
	TT-------------------------------------------------------------------------------TTAGAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTTTGTATTATCTATCACCCTT-TA-GTATATTAACCCATTTACCAGTTTGTTGGG---TGCACTAATGAGAACTTTGCAATGACTACGTTTGGGTCTTAACTAATAAAATA-------T-TT--A--------------CTGTATATT-------------ATCC----------------TCTTGTCT-------CCTACAC------TC---TGACACCCTTTTCAGCGCTGCTTAGCTAAT--------A-AA----TTGTAACAT-----TTTTATCCATCG--G--------ATGTACATTAAGCTTA | 
	| droWil2 | 
	scf2_1100000004521:5260365-5260619 - | 
	 | 
	ACA---------ATTCTTTAGATCTTC---AAAAA-CT---TACTGA---------------------------------------ACTTTGATAGCAAATGAAATCAAACTTTGTTTATTGATATTAAACT-------------------------------------------------------------------------------------------------------------------------------------------GCGG--------------TACTTTTT-TTTGGGTATTTTGCTACTGAGAACTTTGCAATTTTTATTTTATTAAT-ATA---------------------TATT--------------GTATATATT-------------TAATATATAT--------A-T-TC------ATTACCTTACATTA----TA---TGTTCCACTTTGCAGCGCTGCTATGTTAAA-------ACAATTCTAAACATATAT-----TTGTG----TCT--A--------TAGCTTATAATATTTA | 
	| droVir3 | 
	scaffold_12723:500109-500297 - | 
	 | 
	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAATGAGAACTTTGCAGTAACGATGTTTATATTTA----------------AGATC-TT--T--------------CATGATAACTAAACTGAAAAA-TCTT-----TATTATTACACAATCTATA------CCTTACATACACATTT-TAAAAGACACGTTGCAG-----CTTAGCAAATAGTTTATAA-AA----TTGTAACATTAAAAATGTGCGTCTACCATA--TATTCATATT-----ATTTTA | 
	| droMoj3 | 
	scaffold_6500:29034808-29034983 - | 
	 | 
	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAATGAGAACTTTGCAATAC-GATGTTTATCTAT--TT----------TTAAGAAT-CC--TATTAATAGTTAT----TGACAACT------------AAA-TCAC-T----------TTTT--CT-CA-CACTCTACAT---C--TCTGACAATCCACTTTGCAG-----CTTAGCAAAT--------A-GT----TTTTAGCATTAAGGATGCGTGTCTACCATAAAGATTCAGATT-----GATTTG | 
	| droGri2 | 
	scaffold_15252:4091497-4091695 - | 
	 | 
	TATTTTATG-----------------------TAA-TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------TCTACATT-TTGGGG---CATGCCAATGAGAACTTTGCAATAGCGATGTATTT------------------TTAAGATCCCT--T--------------AATGATATTTATACTAAATAATAAATA---AT----------ACTC--CT-TA-CTCTGTACAC---CAATT-TAAAACACATATTTCAG-----C-----TTAT--------A-GA----TTGTAACATTCTAGATATGCGTCTACCATA--TATTTATATT-----ATTTTA |