ID:

dsi_21274

 Coordinate:

x:7693179-7693415 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.2 -45.0 -45.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
(CA)nSimple_repeatSimple_repeat+
mature
  1. 3l:15221460-15221480 +
  2. dsi_21274  x:7693229-7693249 +
star

Sense Strand Reads

AAGGTTTGGTTTTTCATGCACACTTTTCACTCGATGTAAGGATCTTTTTCGTGTGAAACTCATTCAACTTTAATGACCAACAGTCATCAGCCATACACACACACACACACACACTCTCATAAGCACACACACACTCACACACTTACACACACTCGTACTACATGCACGGAACTAACCCACATCCGCTCTTCTCCGCACAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGTGTGGAGAAGGATGGGCGGCTGGTCAACTGCTCACCCGCACCGCAGCTGCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAGCAG
**************************************************((((((................(((((.....)))))..........................((......))...........))))))......................(((.((((...........)))).((((((((((((.(((((...((...(((..........)))..))...)))......)))))))))))))).(((((((........)))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................................TGCGTGTGGAGAAGGATGGGCGT....................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCTGCCGGATCTCCGGGC........................... 18 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACACACACACACACTCTCATA........................................................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CGAATCCCGTACGGACGCCA........................................................................................................ 20 3 2 0.50 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CGCCGCGCGCCGGGA.................... 15 1 4 0.25 1 0 0 0 0 1 0 0
...............................................CTCGTGTGAAACTCCTTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0
....................................................................................................................................................................................................................................................................................................GCGGCCGGGTCGCCGGG............................ 17 2 15 0.07 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................AGCCCGTACCGTCGCG......................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................GCGGAGAAGGCTGGGCGGT...................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

TTCCAAACCAAAAAGTACGTGTGAAAAGTGAGCTACATTCCTAGAAAAAGCACACTTTGAGTAAGTTGAAATTACTGGTTGTCAGTAGTCGGTATGTGTGTGTGTGTGTGTGTGAGAGTATTCGTGTGTGTGTGAGTGTGTGAATGTGTGTGAGCATGATGTACGTGCCTTGATTGGGTGTAGGCGAGAAGAGGCGTGTCGAGTTACCCTTACGCTTCGGGCATGGCGGCGGTGCACTAGTAGACGCACACCTCTTCCTACCCGCCGACCAGTTGACGAGTGGGCGTGGCGTCGACGGCCTAGCGGCCCGCGGCCCTTTACGCTCGTCGCCGTCGTC
**************************************************((((((................(((((.....)))))..........................((......))...........))))))......................(((.((((...........)))).((((((((((((.(((((...((...(((..........)))..))...)))......)))))))))))))).(((((((........)))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
................................................................................GTCAGTAGTCGGTATGTGTGTGT.......................................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGCATGGCGGCGGTGCACTAGT................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................TGAGAGTATTCGTGTGTGTGTGAGT........................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TACGCTTCGGGCATGA............................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................GGACTTGGTTGGGTGTAGGCG....................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................AGTGTGTGTGTGTTAGAGAATT....................................................................................................................................................................................................................... 22 3 20 0.40 8 0 0 0 0 8 0 0
...........................................................................................................................................................................................GAAGAGGCGTGTCTAGTTTCG................................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0
........................................................................................................................................................................CTTGGTGGGGTGTAGGCG....................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0
.........AAGAAGTGCGTGGGAAAAGTG................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................................ACGCTTCGGGCAAGG............................................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0
....................................................................................................TGTGTGTGTGTGTGAGAGT.......................................................................................................................................................................................................................... 19 0 19 0.16 3 0 3 0 0 0 0 0
...................................................................AAAATTAGTAGTTGTCAGTAGT........................................................................................................................................................................................................................................................ 22 3 7 0.14 1 0 0 0 1 0 0 0
....................................................................AAAATAGTAGTTGTCAGTAGT........................................................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0 0
...............................................................................TGTCAGTATTCGGGATGTC............................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 1 0
............................................................................................................................................................................................AAGAGGCGTGTCGAGGTT................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0
...................................................................................AGTAGTCGGTTCGTGTATG........................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0
....................................................................AAATTACTGCTTGTCGGT........................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 1 0 0 0 0
......................................................................................................TGTGTGTGTGTTAGAGAATT....................................................................................................................................................................................................................... 20 2 13 0.08 1 0 0 0 0 1 0 0
.............................................................................GTTGTCAGGAGTCGGTC................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................GTCGTCCTAGCGGCCCG........................... 17 2 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7693129-7693465 + dsi_21274 AAGGTTTGGTTTTTCATGCACACTTTT-CACTCGATGTAAGGATCTTTTTCGTGT--------------------------------------------------------------GAAACTCATTCAACTTTAATGACCAACAGT---------------------------------CATCAGC-------CAT----ACACACACACACACACACA----------------------CTCTCATAAGCACACA------CACAC---------------------TC------------ACAC-ACTT----ACACACA----------------------------------CTCG-----------------------------------------TAC------TAC---------ATGCACGGAACTAACCCACATC--------------------------------------------------------------CGCTC----------------TTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGTGTGGAGAAGGATGGGCGG-----CTGGTCAACTGCTCACCCGCACCGCAGCTGCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAG
droSec2 scaffold_44:212790-213122 + AAGGTTGGGTTTTTCATGCACACTTTT-CGCTCGATGTAAGGACCTTTTTCGTGT--------------------------------------------------------------GAAACTCATTCAACTTTAATGACCAACAGT---------------------------------CATCAGC-------CAT----ACACACACAC----ACACA----------------------CTCTCGTAAGCACACA------CACAC---------------------TC------------ACAC-ACTT----ACACACA----------------------------------ATCG-----------------------------------------T------ACTAC---------ATGCACGGAACTAACCCACATC--------------------------------------------------------------CGCTC----------------TTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGCCGG-----CTGGTCAACTGCTCACCCGCACCGCAGCTGCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAG
dm3 chrX:8121678-8122040 + AAGGTTTGGT--TTCATGCACACTTTT-CACTCGATGTAAGGACATTTTTCGTGT-------------------------------------------GAA---CACTGGCAACAAATAAACTCATGCAACTTTAATGACC----------------------------------------ATCAGC-------CAT----ACACACACACACACACACA------------CACACACA--CACTCATAAGCACA----------CAC---------------------TC------------ACAC-ACTT----ACAAACA----------------------------------CTCGACTTGAAAA-CGT------------------AT---------------------------------------------------GCTACGTAGTAT-GCACGCAACTAATGGAAC--------------------------------GCTC----------------TACTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGTCGG-----CTGGTCAATTGCTCACCCGCACCACAGCTGCCGGATCGCAGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAG
droEre2 scaffold_4690:10488636-10489005 + AAGGTTTGGT--TTCATGCGCACTTTT-CACCCAATGAAAGGACCTTTTTCGTG---------------TTCATCACGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATCAACTCATTTAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACACAC----------ACA----------------------CTCTCACAAGCACACT------CACA---------------------------------------C-ACTTAGGCACACA----------------------------------CACGCGACTTGAAAA-C-------------------AAGGACATGCATAT------------------------------------------------------------ACTAATA--------------------------------CTTCGCTC----------------TTCTC-------------------TGCA--------------CAGCTCAATGGGAACGCCAAGCCCGTACCACCGCCACGTGATCATCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCACCTCAGCTTCCGGATCGCAGGGGGCCGGGGAATGGGAGCAGCGGGAGCAG------CAG
droYak3 X:13192061-13192481 - AAGGTTTGGT--TTCATGCACACTTTT-CACTTCATGTAAGGACCTTTTTCGCGT----T---------TTCATCTCGCTGG-GAAATGCAC-----AGAAAATCACTGGCTACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGCCATCAGCCAT----ACACACACACACACACACA----------------------CTCGCATAAGCACACT------TACAC---------------------AC------------ACAC-ACTT----ACACACA------------------------TAGGCACACACTCGACTTGAAAG-CAAATACA-------------------TGCACACAT----------------------------------------------------------ACTAACGGGGCTCGT------ACCCCCCTCA--------CTTCGCTC----------------CTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTGCCACCGCCACGAGATCATCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCACCCGCACCACAGTTGCCGGATCGAAGGGCGCCGGGGAATGCGAGCAGCGGCAG---------CAG
droEug1 scf7180000409064:201337-201717 + AAGGAT-------TCATGTACACTTAT-CACTTAATGTAAGGGCCTTTTTCG-----------------TTCATCGCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACACACACACA--CACACA----------------------CTCTCATAAACACACT------CACAA----------------AAAACAC------------ATAC-ACTT-------------------------------------------------------------------------------AAG---------------------------------------------------GACACACAATATGGCGCATAACTAATGGGGCTCTCAT---------TCTTGTTT------CTTGCAA---------------TGTTTC-------------------CAAA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCCCGTGATCATTTACGGGTGGAAAAGGATGGGCGT-----CTGGTCAACTGCTCACCCGCACCACAACTGCCGGATCGAAGGGCGCCGGGTAATGCGAGTAGCGGCAG---------CAG
droBia1 scf7180000302421:2059514-2059926 + AAGGCTTCATT-TCCATGCGCACTTTT-CACATAATGCAGGGAGCCTTTTCG-----------------CTCATCTCGCAGG-GAAGTGCAC-----AGAAAA-CACTGGCAACAAATAAACCCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----TCA---ACACTCGCACACA----------------------CTCGCATAAACTCACC------CACTC---------------------A-------------ACAC-ACTT-----CACACA--------------------------TTTATT--------------------TA-------------CAAG---------------------------------------------------GATACGCAGTATGGCGCCCAACTAATGGGCCTTCC-----------CACGTTTTC---TTGCCATTTATTTTTGTCTTGCCCTTTCTC-------------------AATG--------------CAGCTCAATGGAAATGCGAAGCCCGTGCCGCCGCCACGTGATCACCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGACCGCAGGGCGCCCGGAAACGCGAGCAGCGGCAG---------CAG
droTak1 scf7180000415141:200864-201233 + AAGGTTTCATT-TTCATGTACACTTTT-CACTCAACTTAAGGCCCTTTTTCG-----------------CTCATCTCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACA-------ACACACACA----------------------CTCTCATAGACACACT------CACAC---------------------AC------------AC---ACT----------------------------G-----------------------------------------GAGACACTACAAG---------------------------------------------------GATAAGCAATATGGCGCTTAACTAATGGGATTCCC-----------CCTTT----------------------------------TTT-------------------CCCG--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATTTGCGGGTGGAGAAGGACGGGCGT-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAG
droEle1 scf7180000491006:1640624-1641020 + AAGGTT-------TCATTCACACTTTT-CACTAAATGTAAGGGCCCGTTTCG-----------------TTCATCCTGCAGGGGAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACAC--------------A----------------------CTCTCATAAACACACA------AACAC---------------------AC------------AC---------------A----------------------------------TGCTCGTTTCGAAAA-CACTTACAAGGATACACT-GAAG---------------------------------------------------GATACGCCATATGGTACATAACTAATGGGTCTCGC-----------CCTGTTTTCCATTTTCCATTT----------------CTTTT-------------------GGTC--------------CAGCTCAATGGGAATGCAAAGCCCGTACCGCCGCCCCGTGATCACTTGCGGGTGGAAAAGGATGGGCGT-----CTGGTCAATTGCTCCCCTGCCCCTCAACTTCCGGATCGGCGGGCGCCGGGCAATGGGAGCAGCGGCAG---------CAG
droRho1 scf7180000779675:35705-36082 - AAGGTT-------TCATGTACACTTTT-CACTTAATGTAAAGGCCTG----------------------TTCATCTCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAACAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACA--------------------------------------CTCTCATAAGCACACA------AACAC---------------------AC-----------------------------A----------------------------------TGCTCGTCTCAAAAA-CACTTACAAGGATACACT-GAAG---------------------------------------------------GATACGCAATATGGTGCATAACTAATGGGATTCCC-----------CCCGTTTTC--------CCTC---------------TCTTTC-------------------CGTG--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCCCGTGATCACTTACGGGTGGAAAAGGATGGGCGT-----CTGGTCAACTGCTCTCCTGCCCCCCAACTTCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCGG---------T--
droFic1 scf7180000454077:1868211-1868636 - AAGGTT------TTCGTGTACACTCCT-CACTTAGTGTAAGGACCTTTTTCGTTTTCGTTTTCGTTTCGTTCATCCAGCAGGCAAAATGCACAAAACAGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACA--------------------------------------CTCTCATAAGCACTCA------CACACACTAACTTACACATAAA------------------AT---------------------ACACACACAGAGAGAAGTG--------------------------------------TACACT-TAAG---------------------------------------------------GACATGCAGTATGGCACATAACTAATGGTGTTCAC-----------CCTGTTT-------TTTGATA----------------CTCTC-------------------CGCT--------------TAGCTTAATGGGAATGCGAAGCCCGTTCCGCCGCCCCGAGATCATTTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGACCGGCGGGCGCCGGGCAATGCGAGCAGCGGCAGTAGCAGCGGCGG
droKik1 scf7180000302592:1933503-1933902 + AAGGTTC-GT--TCCACTTACACTTTCACACTTAATGCTGGGGGGCTT--------------------------CTGGCGGG-AGAATGCAC----CGGAA---CACTCGC---CAACAAACTCATTCAACTTTAATGACCAGCAGC---------------------------------CATCAGC-------CAT----GCACACACACACACACACA----------------------CACACACTGGCACACT------CTCAC---------------------TG------------ACACAACTT----ACACACA------------------------TATTCATG--------------------TA-------------CAAA--------------------------------------A------------ACTATATAGTAT-ATATATGGCTAATGGGTTTCCC-----------CTCAATTTCTGCTCTCTGCTT----TTTTC---------TTC-------------------CCTT--------------AAGCTCAATGGGAACGCAAAACCTGTGCCACCGCCCAGGGATCACCTGCGGGTGGAGAAAGACGGGCGC-----CTGGTCAACTGCTCACCTGCCCCCCAATTGCCGGACCGCCGGGCGCCGGGTAATGCCAGCAGCGGTAGTAG------CTC
droAna3 scaffold_13417:471390-471669 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----ACACACACAC----ACACA----------------------CACACAGATATAAACA------CACAC---------------------TT------------ACGC-GCTC----AGAGATA----------------------------------CTC------------------------------GAAG---------------------------------------------------GATACGCATTATCCTGCATAACTAATGGAGCCATC-----------TCTTATTT---------CTTC---------------TCTTCCCGCCCGCACTTTTCGCTCGAAAT--------------CAGTTAAATGGAAATGCAAAGCCCGTGCCACCCCCCCGCGATCACTTGCGGGTGGAGAAGGACGGGCGG-----CTCGTCAACTGCTCCCCCGCCCCCCAGCTGCCGGATCGGCGGGCGCCCGGCAACGCCAGCAGCGGCAG---------CGG
droBip1 scf7180000396573:14472-14856 - AA----------------------------------------------------------------------------------------------------------------------ATCCATTCAACTTTAATGACCAACAACAAGAACAACAAGAAAACCAACAAGAACCACCTCCATCAAC-------CACTTATCCACACCCAT--------ACTCTTACACCCACACACACATACTTTC--------------------AC---------------------TTCACTCTAAAGACACAC-ACTT----ACATACAAACACACACATACACTG--------------------------------------------------GAAG---------------------------------------------------GATACGCATTATCCTGCATAACTAATGGAGCCATC-----------TTTTATTTC--------CCTT----------------TTTTTCACTTTTATTTTTCACTTGAAAT--------------CAGTTAAATGGAAATGCAAAGCCCGTGCCACCGCCTCGAGATCATTTGCGGGTCGAAAAGGATGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAGCTGCCGGATCGGCGGGCGCCCGGCAATGCCAGCAGCGGCAGTGG------CAG
dp5 XL_group1e:4059072-4059328 + AAA---------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------CATCAGT-------CAC----ACACAGAAACATACA----------------------------------ACTACACA------CACAC----------------------------------------------------------ACACACACAAACTGAAACATACAG--------------------ACA-------------------------TGCATACATATG----------TTCAG------GAAA----------------------------------------------AACTGATGTGAA--------AAAT--CGCGT------------------TTT-------------------CCCA--------------CAGCTCAACGGCAATGCCAAGCCCGTGCCACCGCCCCGAGATCATCTACGGGTGGAGAAGGACGGCCGG-----CTGGTCAACTGTTCGCCCGCCCCCCAACTGCCGGATCGTCGGGCAGCGGGCAACG---GCAACGGCAG---------CAG
droPer2 scaffold_17:996918-997176 + AAA---------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------CATCAGT-------CAC----ACACAGAAACATACA----------------------------------ACTACACACACACAC--------------------------------------------------------------ACACACACAAACTGAAACATACAG--------------------ACA-------------------------TGCATACATATG----------TTCAG------GAAA----------------------------------------------AACTGATGTGAA--------AAAT--CGCGT------------------TTT-------------------CCCA--------------CAGCTCAATGGCAATGCCAAGCCCGTGCCACCGCCCCGAGATCATCTACGGGTGGAGAAGGACGGCCGG-----CTGGTCAACTGTTCGCCCGCCCCCCAACTGCCGGATCGTCGGGCAGCTGGCAACG---GCAACGGCAG---------CAG
droWil2 scf2_1100000004909:6810056-6810303 - --------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------CTTCATT-------TAC----GCACACATACACACACACA----------------------CACACACAGACACATA------TGTAT---------------------AT------------ACAC--------------------------------------------------------------------------------------------GCAGGCGT--TTTACTTGTTGTTTAAGCTTAAAACTAATCCAAAAC----------------------------------------------------------TT--CTCAT----------------TTACA-------------------TATG--------------CAGCTTAATGGTAATGCAAAACCCGTGCCACCTCCACGCGATCATTTGCGTGTGGAGAAGGATGGACGC-----CTTATCAATTGTGCACCCGCCCCTCAATTGCCCGATCGTCGCATTTTGGGCA---------ATGGCAG---------CAG
droVir3 scaffold_12970:11763487-11763703 - CATGCA----------CACACA-----------------------------------------------------------------CACAC-----A-------------------CAAACA-----------------------------------------------------------------------CAC----ACACACACACACACACACA----------------------CGCACACATACACACA------CACAC---------------------AC------------ACAC-ACAT----ACACATA-------------------------------------------------------------------CACG--------C------A-TAC---------AT---------------------------A------CACAC--------------------------------------------------------------------A-------------------CTCA----------------CATCAATGGCGAGATCAAT------GCA------CTAGCTGACTGGCCAGTGTTGACAGTGAGGCTA-----TTGCCTA--------------ACGCAGC-GGCGCATTGCAAAAAGGTTAGAAACAACAACAACAGCAG---------CAG
droMoj3 scaffold_6500:26743749-26743947 - AACGACGCACA-ACCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC----ACACGCACAC--------G----------------------CACCCATACACACACA------CACAC----------ACAC-------AC------------ACAC-ACTC----ACACAC-----------------------------------------------A-CACTCACACTCACACATT-CGAA-------------------------------------------CCTACTCC--------------------------------------------------------------CGCAC--------------------A-------------------CCCACTGATTGATGATGACAACACAGCAGCAACTAGAGGC------------------------AGCGGCAGCAGCAGCAGCGTCGA-----CCG------------------------------A--------------GTCGGCGGCAGCAGCAGCAG---------CGG
droGri2 scaffold_15126:7839527-7839780 + ATGT---------------AAATTTGT-TG-TTATTGTAGAGCACATTTACA-----------------TAC-----------GCATGCCAC-----ACAA---CACTCGC---------------------------------------------------------------------------T-------CAC----ATACACACACACACA----------------------------CACATACACACACA------CACA--------------------------------------------------------------CACATACACACACACACACAC--------------------ACA-------------------------CACACACAGAGA----------TCCAT------T-------CACA--------------------------------------TACTTATTTTGA--------ACATTTCGCCA------------------TGT-------------------CCGG--------------CAAAGCGACGTCAATGACAAGCCCCGGCTGG--CTGAGTGACTGGTTGGCTGGACAGATGGACCGACTGAGTGACTGACTGA---------------------------------------------------------------------CTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGGTTTGGTTTTTCATGCACACTTTT-CACTCGATGTAAGGATCTTTTTCGTGT--------------------------------------------------------------GAAACTCATTCAACTTTAATGACCAACAGT---------------------------------CATCAGC-------CAT----ACACACACACACACACACA----------------------CTCTCATAAGCACACA------CACAC---------------------TC------------ACAC-ACTT----ACACACA----------------------------------CTCG-----------------------------------------TAC------TAC---------ATGCACGGAACTAACCCACATC--------------------------------------------------------------CGCTC----------------TTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGTGTGGAGAAGGATGGGCGG-----CTGGTCAACTGCTCACCCGCACCGCAGCTGCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGTGGAGAAGGATGGGCGT-----................................................................................2311.00100000000000010000
...............................................................................................................................................................................................................ACACACACACACA----------------------CTCTCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000100000000000
droSec2
AAGGTTGGGTTTTTCATGCACACTTTT-CGCTCGATGTAAGGACCTTTTTCGTGT--------------------------------------------------------------GAAACTCATTCAACTTTAATGACCAACAGT---------------------------------CATCAGC-------CAT----ACACACACAC----ACACA----------------------CTCTCGTAAGCACACA------CACAC---------------------TC------------ACAC-ACTT----ACACACA----------------------------------ATCG-----------------------------------------T------ACTAC---------ATGCACGGAACTAACCCACATC--------------------------------------------------------------CGCTC----------------TTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGCCGG-----CTGGTCAACTGCTCACCCGCACCGCAGCTGCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAAATGCGAGCAGCGGC..............2011.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGCCCGTACCGCCGC........................................................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGGTGGAGAAGGATGGC........................................................................................2211.0010010
dm3
AAGGTTTGGT--TTCATGCACACTTTT-CACTCGATGTAAGGACATTTTTCGTGT-------------------------------------------GAA---CACTGGCAACAAATAAACTCATGCAACTTTAATGACC----------------------------------------ATCAGC-------CAT----ACACACACACACACACACA------------CACACACA--CACTCATAAGCACA----------CAC---------------------TC------------ACAC-ACTT----ACAAACA----------------------------------CTCGACTTGAAAA-CGT------------------AT---------------------------------------------------GCTACGTAGTAT-GCACGCAACTAATGGAAC--------------------------------GCTC----------------TACTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGTCGG-----CTGGTCAATTGCTCACCCGCACCACAGCTGCCGGATCGCAGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGATCGCAGGGCGCCGGGA.............................24117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGGGTGGAGAAGG.............................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTGCGGGTGGAGAAGGATGGTC.......................................................................................2614.0040000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGTGGAGAAGGATGGTCGG-----C...............................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAATGCGAAGCCCGTACCGCC..........................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCTGCCGGATCGCAGGGCGCC.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGTGGAGAAGGATGGTC.......................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAATGGAAC--------------------------------GCTC----------------TT..................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGATCGCAGGGCGCCGG...............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGATCGCAGGGCGCCGGGA.............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
......................................................................................................................................................................................................................CACACA------------CACACACA--CACTCATAAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATGGTCGG-----CTGGTCAA........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................T-------------------------------------------GAA---CACTGGCAACAAATAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................T-------------------------------------------GAA---CACTGGCAACAAATAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGGGAATGCGAAGCCCGTACCGCCA.........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGGGTGGAGAAGGATGGTCGG-----C...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTGATCATCTGCGGGTGGAG.................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTGCGGGTGGAGAAGGATGG.........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGCCGGATCGCAGGGCGCC.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCTGCCGGATCGCAGGGCGCC.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGGATGGTCGG-----C...............................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACC----------------------------------------ATCAGC-------CAT----ACACACACACACACACACA------------CACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGGTGGAGAAGGATGGTCGG-----................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCACAGCTGCCGGATCGCAGG......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGATGGTCGG-----CTGGTCA.........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG-----CTGGTCAATTGCTCACC...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGTCGG-----CTGGTCAATTG.....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGCGCCGGGAAATGCGAGC....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGGAAATGCGAGCAGC.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCTGCCGGATCGCAGGGCGCCGGG..............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCTGCCGGATCGCAGGGCGCCGG...............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------CAGCTCAATGGGAATGCGAAGC....................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGGGTGGAGAAGGATGGTCGG-----................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCTGCCGGATCGCAGGG.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGGGCGCCGGGAAATGCGAGC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................TTCGTGT-------------------------------------------GAA---CACTGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGGGTGGAGAAGGATGGT........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCACAGCTGCCGGATCGCAGGGCGC..................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGG-----CTGGTCAATTGCTC..................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TCAGC-------CAT----ACACACACACACACACACA------------CACACACA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGGAAATGCGAGCAGC.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGAATGCGAAGCCCGTACCG............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGCCGGATCGCAGGGCGCCG................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAC--------------------------------GCTC----------------TACTC-------------------CGCA--------------C.........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGGAAATGCGAGCAGCGG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-GCACGCAACTAATGGAAC--------------------------------GCTC----------------....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTTCGTGT-------------------------------------------GAA---CACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGATGGTCGG-----CTGGTC..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGGTGGAGAAGGATGG.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGGAGAAGGATGGTC.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTCACCCGCACCACAGCTGCCG...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGATCGCAGGGCGCCGG...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACAGCTGCCGGATCGCAGGGC....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAATTGCTCACCCGCACCACAGCTGC.................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAGGTTTGGT--TTCATGCGCACTTTT-CACCCAATGAAAGGACCTTTTTCGTG---------------TTCATCACGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATCAACTCATTTAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACACAC----------ACA----------------------CTCTCACAAGCACACT------CACA---------------------------------------C-ACTTAGGCACACA----------------------------------CACGCGACTTGAAAA-C-------------------AAGGACATGCATAT------------------------------------------------------------ACTAATA--------------------------------CTTCGCTC----------------TTCTC-------------------TGCA--------------CAGCTCAATGGGAACGCCAAGCCCGTACCACCGCCACGTGATCATCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCACCTCAGCTTCCGGATCGCAGGGGGCCGGGGAATGGGAGCAGCGGGAGCAG------CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGCGGGTGGAGAAGGA............................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGGATCGCAGGGGGCCGGGG.............................2411.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGGATCGCAGGGGGCC.................................1911.0010000100
droYak3
AAGGTTTGGT--TTCATGCACACTTTT-CACTTCATGTAAGGACCTTTTTCGCGT----T---------TTCATCTCGCTGG-GAAATGCAC-----AGAAAATCACTGGCTACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGCCATCAGCCAT----ACACACACACACACACACA----------------------CTCGCATAAGCACACT------TACAC---------------------AC------------ACAC-ACTT----ACACACA------------------------TAGGCACACACTCGACTTGAAAG-CAAATACA-------------------TGCACACAT----------------------------------------------------------ACTAACGGGGCTCGT------ACCCCCCTCA--------CTTCGCTC----------------CTCTC-------------------CGCA--------------CAGCTCAATGGGAATGCGAAGCCCGTGCCACCGCCACGAGATCATCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCACCCGCACCACAGTTGCCGGATCGAAGGGCGCCGGGGAATGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----CTGGTCAACTGCTCACCCGCACC.........................................................2411.00100100000000
droEug1
AAGGAT-------TCATGTACACTTAT-CACTTAATGTAAGGGCCTTTTTCG-----------------TTCATCGCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACACACACACA--CACACA----------------------CTCTCATAAACACACT------CACAA----------------AAAACAC------------ATAC-ACTT-------------------------------------------------------------------------------AAG---------------------------------------------------GACACACAATATGGCGCATAACTAATGGGGCTCTCAT---------TCTTGTTT------CTTGCAA---------------TGTTTC-------------------CAAA--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCCCGTGATCATTTACGGGTGGAAAAGGATGGGCGT-----CTGGTCAACTGCTCACCCGCACCACAACTGCCGGATCGAAGGGCGCCGGGTAATGCGAGTAGCGGCAG---------CAGSizeHit CountTotal NormTotal
No Reads
droBia1
AAGGCTTCATT-TCCATGCGCACTTTT-CACATAATGCAGGGAGCCTTTTCG-----------------CTCATCTCGCAGG-GAAGTGCAC-----AGAAAA-CACTGGCAACAAATAAACCCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----TCA---ACACTCGCACACA----------------------CTCGCATAAACTCACC------CACTC---------------------A-------------ACAC-ACTT-----CACACA--------------------------TTTATT--------------------TA-------------CAAG---------------------------------------------------GATACGCAGTATGGCGCCCAACTAATGGGCCTTCC-----------CACGTTTTC---TTGCCATTTATTTTTGTCTTGCCCTTTCTC-------------------AATG--------------CAGCTCAATGGAAATGCGAAGCCCGTGCCGCCGCCACGTGATCACCTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGACCGCAGGGCGCCCGGAAACGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAGGTTTCATT-TTCATGTACACTTTT-CACTCAACTTAAGGCCCTTTTTCG-----------------CTCATCTCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACA-------ACACACACA----------------------CTCTCATAGACACACT------CACAC---------------------AC------------AC---ACT----------------------------G-----------------------------------------GAGACACTACAAG---------------------------------------------------GATAAGCAATATGGCGCTTAACTAATGGGATTCCC-----------CCTTT----------------------------------TTT-------------------CCCG--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCACGTGATCATTTGCGGGTGGAGAAGGACGGGCGT-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotal
No Reads
droEle1
AAGGTT-------TCATTCACACTTTT-CACTAAATGTAAGGGCCCGTTTCG-----------------TTCATCCTGCAGGGGAAATGCAC-----AGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACAC--------------A----------------------CTCTCATAAACACACA------AACAC---------------------AC------------AC---------------A----------------------------------TGCTCGTTTCGAAAA-CACTTACAAGGATACACT-GAAG---------------------------------------------------GATACGCCATATGGTACATAACTAATGGGTCTCGC-----------CCTGTTTTCCATTTTCCATTT----------------CTTTT-------------------GGTC--------------CAGCTCAATGGGAATGCAAAGCCCGTACCGCCGCCCCGTGATCACTTGCGGGTGGAAAAGGATGGGCGT-----CTGGTCAATTGCTCCCCTGCCCCTCAACTTCCGGATCGGCGGGCGCCGGGCAATGGGAGCAGCGGCAG---------CAGSizeHit CountTotal NormTotal
No Reads
droRho1
AAGGTT-------TCATGTACACTTTT-CACTTAATGTAAAGGCCTG----------------------TTCATCTCGCAGG-GAAATGCAC-----AGAA---CACTGGCAACAAACAAACTCATTCAACTTTAATGACCAACAAC---------------------------------CATCAGC-------CAT----ACA--------------------------------------CTCTCATAAGCACACA------AACAC---------------------AC-----------------------------A----------------------------------TGCTCGTCTCAAAAA-CACTTACAAGGATACACT-GAAG---------------------------------------------------GATACGCAATATGGTGCATAACTAATGGGATTCCC-----------CCCGTTTTC--------CCTC---------------TCTTTC-------------------CGTG--------------CAGCTCAATGGGAATGCGAAGCCCGTACCGCCGCCCCGTGATCACTTACGGGTGGAAAAGGATGGGCGT-----CTGGTCAACTGCTCTCCTGCCCCCCAACTTCCGGATCGCCGGGCGCCGGGAAATGCGAGCAGCGGCGG---------T--SizeHit CountTotal NormTotal
No Reads
droFic1
AAGGTT------TTCGTGTACACTCCT-CACTTAGTGTAAGGACCTTTTTCGTTTTCGTTTTCGTTTCGTTCATCCAGCAGGCAAAATGCACAAAACAGAA---CACTGGCAACAAATAAACTCATTCAACTTTAATGACCAACAGC---------------------------------CATCAGC-------CAT----ACA--------------------------------------CTCTCATAAGCACTCA------CACACACTAACTTACACATAAA------------------AT---------------------ACACACACAGAGAGAAGTG--------------------------------------TACACT-TAAG---------------------------------------------------GACATGCAGTATGGCACATAACTAATGGTGTTCAC-----------CCTGTTT-------TTTGATA----------------CTCTC-------------------CGCT--------------TAGCTTAATGGGAATGCGAAGCCCGTTCCGCCGCCCCGAGATCATTTGCGGGTGGAGAAGGACGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAACTTCCGGACCGGCGGGCGCCGGGCAATGCGAGCAGCGGCAGTAGCAGCGGCGGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGGTTC-GT--TCCACTTACACTTTCACACTTAATGCTGGGGGGCTT--------------------------CTGGCGGG-AGAATGCAC----CGGAA---CACTCGC---CAACAAACTCATTCAACTTTAATGACCAGCAGC---------------------------------CATCAGC-------CAT----GCACACACACACACACACA----------------------CACACACTGGCACACT------CTCAC---------------------TG------------ACACAACTT----ACACACA------------------------TATTCATG--------------------TA-------------CAAA--------------------------------------A------------ACTATATAGTAT-ATATATGGCTAATGGGTTTCCC-----------CTCAATTTCTGCTCTCTGCTT----TTTTC---------TTC-------------------CCTT--------------AAGCTCAATGGGAACGCAAAACCTGTGCCACCGCCCAGGGATCACCTGCGGGTGGAGAAAGACGGGCGC-----CTGGTCAACTGCTCACCTGCCCCCCAATTGCCGGACCGCCGGGCGCCGGGTAATGCCAGCAGCGGTAGTAG------CTCSizeHit CountTotal NormTotal
No Reads
droAna3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----ACACACACAC----ACACA----------------------CACACAGATATAAACA------CACAC---------------------TT------------ACGC-GCTC----AGAGATA----------------------------------CTC------------------------------GAAG---------------------------------------------------GATACGCATTATCCTGCATAACTAATGGAGCCATC-----------TCTTATTT---------CTTC---------------TCTTCCCGCCCGCACTTTTCGCTCGAAAT--------------CAGTTAAATGGAAATGCAAAGCCCGTGCCACCCCCCCGCGATCACTTGCGGGTGGAGAAGGACGGGCGG-----CTCGTCAACTGCTCCCCCGCCCCCCAGCTGCCGGATCGGCGGGCGCCCGGCAACGCCAGCAGCGGCAG---------CGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCAAAGCCCGTGCCACCCCCCCGC...................................................................................................................2811.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCGTGCCACCCCCCCGCGATC...............................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCAGCTGCCGGATCGGC........................................2011.001010000
droBip1
AA----------------------------------------------------------------------------------------------------------------------ATCCATTCAACTTTAATGACCAACAACAAGAACAACAAGAAAACCAACAAGAACCACCTCCATCAAC-------CACTTATCCACACCCAT--------ACTCTTACACCCACACACACATACTTTC--------------------AC---------------------TTCACTCTAAAGACACAC-ACTT----ACATACAAACACACACATACACTG--------------------------------------------------GAAG---------------------------------------------------GATACGCATTATCCTGCATAACTAATGGAGCCATC-----------TTTTATTTC--------CCTT----------------TTTTTCACTTTTATTTTTCACTTGAAAT--------------CAGTTAAATGGAAATGCAAAGCCCGTGCCACCGCCTCGAGATCATTTGCGGGTCGAAAAGGATGGGCGG-----CTGGTCAACTGCTCCCCCGCCCCCCAGCTGCCGGATCGGCGGGCGCCCGGCAATGCCAGCAGCGGCAGTGG------CAGSizeHit CountTotal NormTotal
No Reads
dp5
AAA---------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------CATCAGT-------CAC----ACACAGAAACATACA----------------------------------ACTACACA------CACAC----------------------------------------------------------ACACACACAAACTGAAACATACAG--------------------ACA-------------------------TGCATACATATG----------TTCAG------GAAA----------------------------------------------AACTGATGTGAA--------AAAT--CGCGT------------------TTT-------------------CCCA--------------CAGCTCAACGGCAATGCCAAGCCCGTGCCACCGCCCCGAGATCATCTACGGGTGGAGAAGGACGGCCGG-----CTGGTCAACTGTTCGCCCGCCCCCCAACTGCCGGATCGTCGGGCAGCGGGCAACG---GCAACGGCAG---------CAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGATCGTCGGGCAGCGGGCAAC..........................2511.0010000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGCAACG---GCAACGG...............1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACTGTTCGCCCGCCCC.........................................................2111.0010100000000
...............................................................................................................................................................................................................................................................ACA------CACAC----------------------------------------------------------ACACACACAAACTG................................................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
droPer2
AAA---------------------------------------------------------------------------------------------------------------------------------------------AAT---------------------------------CATCAGT-------CAC----ACACAGAAACATACA----------------------------------ACTACACACACACAC--------------------------------------------------------------ACACACACAAACTGAAACATACAG--------------------ACA-------------------------TGCATACATATG----------TTCAG------GAAA----------------------------------------------AACTGATGTGAA--------AAAT--CGCGT------------------TTT-------------------CCCA--------------CAGCTCAATGGCAATGCCAAGCCCGTGCCACCGCCCCGAGATCATCTACGGGTGGAGAAGGACGGCCGG-----CTGGTCAACTGTTCGCCCGCCCCCCAACTGCCGGATCGTCGGGCAGCTGGCAACG---GCAACGGCAG---------CAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGATCGTCGGGCAGCTGGCAACG---G.....................2711.001100000
....................................................................................................................................................................................................................................................................CACAC--------------------------------------------------------------ACACACACAAACTG................................................................................................................................................................................................................................................................................................................................................................................................19100.101100000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------CTTCATT-------TAC----GCACACATACACACACACA----------------------CACACACAGACACATA------TGTAT---------------------AT------------ACAC--------------------------------------------------------------------------------------------GCAGGCGT--TTTACTTGTTGTTTAAGCTTAAAACTAATCCAAAAC----------------------------------------------------------TT--CTCAT----------------TTACA-------------------TATG--------------CAGCTTAATGGTAATGCAAAACCCGTGCCACCTCCACGCGATCATTTGCGTGTGGAGAAGGATGGACGC-----CTTATCAATTGTGCACCCGCCCCTCAATTGCCCGATCGTCGCATTTTGGGCA---------ATGGCAG---------CAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAAAACCCGTGCCAC...........................................................................................................................1911.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCATTTGCGTGTGGA..................................................................................................1811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCGTGTGGAGAAGGAT...........................................................................................2011.00100100
droVir3
CATGCA----------CACACA-----------------------------------------------------------------CACAC-----A-------------------CAAACA-----------------------------------------------------------------------CAC----ACACACACACACACACACA----------------------CGCACACATACACACA------CACAC---------------------AC------------ACAC-ACAT----ACACATA-------------------------------------------------------------------CACG--------C------A-TAC---------AT---------------------------A------CACAC--------------------------------------------------------------------A-------------------CTCA----------------CATCAATGGCGAGATCAAT------GCA------CTAGCTGACTGGCCAGTGTTGACAGTGAGGCTA-----TTGCCTA--------------ACGCAGC-GGCGCATTGCAAAAAGGTTAGAAACAACAACAACAGCAG---------CAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.ATGCA----------CACACA-----------------------------------------------------------------CACAC-----A-------------------CAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................CACAC---------------------AC------------ACAC-ACAT----ACACATA-------------------------------------------------------------------CA............................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAG---------CA.19200.051000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................CA----------------------CGCACACATACACACA------CACAC---------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................CACACACACACACA----------------------CGCACACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AACGACGCACA-ACCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC----ACACGCACAC--------G----------------------CACCCATACACACACA------CACAC----------ACAC-------AC------------ACAC-ACTC----ACACAC-----------------------------------------------A-CACTCACACTCACACATT-CGAA-------------------------------------------CCTACTCC--------------------------------------------------------------CGCAC--------------------A-------------------CCCACTGATTGATGATGACAACACAGCAGCAACTAGAGGC------------------------AGCGGCAGCAGCAGCAGCGTCGA-----CCG------------------------------A--------------GTCGGCGGCAGCAGCAGCAG---------CGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC------------------------AGCGGCAGCAGCAGCAG...........................................................................................21130.152110000
......................................................................................................................................................................................................................................................................................................................CTC----ACACAC-----------------------------------------------A-CACTCACACT.......................................................................................................................................................................................................................................................................................................................................................2090.111000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC------------------------AGCGGCAGCAGCAGCAGC..........................................................................................22100.101000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC------------------------AGCGGCAGCAGCAGCAGT..........................................................................................22200.102100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC------------------------AGCGGCAGCAGCAGCA............................................................................................20130.081100000
..............................................................................................................................................................................................................................................................................................................................CACAC-----------------------------------------------A-CACTCACACTCACAC..................................................................................................................................................................................................................................................................................................................................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC------------------------AGCGGCAGCAGCAGCAGC..........................................................................................21200.051000010
droGri2
ATGT---------------AAATTTGT-TG-TTATTGTAGAGCACATTTACA-----------------TAC-----------GCATGCCAC-----ACAA---CACTCGC---------------------------------------------------------------------------T-------CAC----ATACACACACACACA----------------------------CACATACACACACA------CACA--------------------------------------------------------------CACATACACACACACACACAC--------------------ACA-------------------------CACACACAGAGA----------TCCAT------T-------CACA--------------------------------------TACTTATTTTGA--------ACATTTCGCCA------------------TGT-------------------CCGG--------------CAAAGCGACGTCAATGACAAGCCCCGGCTGG--CTGAGTGACTGGTTGGCTGGACAGATGGACCGACTGAGTGACTGACTGA---------------------------------------------------------------------CTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:48 AM