ID:

dsi_21253

 Coordinate:

3r:10225043-10225192 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.2 -28.2 -28.0

Flybase annnotation

exon [3r_10224833_10225042_+]; CDS [3r_10224833_10225042_+]; intron [3r_10225043_10226875_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTACGGCTACTCGCCCCGTGCCATCTACGATCATCACTACAGCCGAACAAGTAAGTTGGTACCATATACGGACCACATACTGTACTATCTACAGCCGATCCCCGCCTAACTGCTTTACACAGCCGAGTATCTGTATCTTAATGCTTCCGAAATCGGTGGCCTTGCAAATGTGGATATTGAACTAAGATATCCTAAAGTAAATTTCAAATACCATAGTTAAATATGATCTGGCCAAACCACTTTATGCTAG
**************************************************(((((.((((.((......))))))....(((((.....))))).........((......)).....((((........))))........(((.(((....))).))))))))......(((((((.......)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 O001
Testis
 GSM343915
embryo
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
........................CTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 20 0 1 10.00 10 9 1 0 0 0 0 0 0 0
......................ATCTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 22 0 1 5.00 5 4 1 0 0 0 0 0 0 0
.......................TCTACGATCATCACTACAGCCG............................................................................................................................................................................................................. 22 0 1 4.00 4 0 2 2 0 0 0 0 0 0
...................GCCATCTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0
......................ATCTACGATCATCACTACAGC............................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.................GTGCCATCTACGATCATC....................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................CATCTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................GTGCCATCTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................TACGATCATCACTACAGCC.............................................................................................................................................................................................................. 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.........................TACGATCATCACTACAGCCG............................................................................................................................................................................................................. 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0
...................GCCATCTACGATCATCACTACAGC............................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCAAATGTGGATATTGAACTAAGG............................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................CATCACTACAGCCGAACAATTCC.................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................TACGATCATCACTACAGCCGAACAACT...................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........ACTCGCCCCGTGCCATCT................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................ACGATCATCACTACAGCCGAACA......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................CCATCTACGATCATCACTA................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................GTACGATCATCACTACAGCC.............................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................TCTACGATCATCACTACAGCCGAACAACT...................................................................................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................ATCTACGATCATCACTAC.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................CTACGATCATCACTACAGCCGAAC.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................ACGATCATCACTACAGCCGA............................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................GTGCCATCTACGATCATCACT.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................CTACGATCATCACTACAGCCG............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TCGGTGGCCTTGCAAATGTGGAT........................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................ACGATCATCACTACAGCC.............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................ATCTACGATCATCACTACAGCCG............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATAGTTAAATATGATCTGGCC................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTTAAATATGATCTGGCC................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAATGTGGATATTGAACA................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................CGACGAGCATCGCTACAGCC.............................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................GCTGAACCACTTTATGCT.. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
...................................................................................................................TACCAAGCCGACTATCTGTA................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................CTTCCGAAGTCGGTG............................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................CGCATACGAAATCGGTGGCC......................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0
...................................................................................................................TACCCAGCCGACGATCTGT.................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0
......................................................................................ATCTACAGTCGATCAC.................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................AAGCCGATGATCTGTATCT................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GATGCCGATGAGCGGGGCACGGTAGATGCTAGTAGTGATGTCGGCTTGTTCATTCAACCATGGTATATGCCTGGTGTATGACATGATAGATGTCGGCTAGGGGCGGATTGACGAAATGTGTCGGCTCATAGACATAGAATTACGAAGGCTTTAGCCACCGGAACGTTTACACCTATAACTTGATTCTATAGGATTTCATTTAAAGTTTATGGTATCAATTTATACTAGACCGGTTTGGTGAAATACGATC
**************************************************(((((.((((.((......))))))....(((((.....))))).........((......)).....((((........))))........(((.(((....))).))))))))......(((((((.......)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........................................................................................ATGCTGGCTTGGGGCGGAT.............................................................................................................................................. 19 3 6 0.17 1 1 0
...........GCGGGGCAAGGTAGCTGAT............................................................................................................................................................................................................................ 19 3 10 0.10 1 0 1

Generated: 04/24/2015 at 10:38 AM