ID:

dsi_21251

 Coordinate:

2r:14695302-14695451 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.1 -17.0

Flybase annnotation

CDS [2r_14694444_14695301_+]; exon [2r_14694305_14695301_+]; intron [2r_14695302_14695878_+]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGCAAAACCACTTCTTTGTCTATATATATGTATATATATATATTTTTTTTTGGGTAAGAGTTGTAGCTTGCGCCTACCCAATTTATGCCACAATTAAGCTCCATTTGGGGTCAGCTTTTGTGTTCCTTGACCCCCTTTTGATAATAAGTCAAGTTGCGTGTTGAAGTAAGGAGCTAATAATAGCGGTAGCTCAATAA
***********************************************************************************************************...(((((......((.((.((.......)).))))......))))).....(((((((((......))....)))))))..************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 O001
Testis
 SRR1275487
Male larvae		 SRR618934
dsim w501 ovaries
 SRR902009
testis
.....................CCCTGGAATTGGCCGAGAAACTGAAGCAGC....................................................................................................................................................................................................... 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................TGGAATTGGCCGAGAAACTGAAGCAGC....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TGTGTTCCTTGACCCCCT............................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................CCTGGAATTGGCCGAGAAACTGAAGC.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................CCCTGGAATTGGCAGAGAAACTGAAGC.......................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TAAGAGTTGTAGCTTGCGCCT.......................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................CTACTCCCTGGAATTGGCC....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............GACTACTCCCTGGAATTGGC........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.....................CCCTGGAATTGGCCGAGAAACTGAAGC.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GACTACTCCCTGGAATTGGCCGAGA................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................GAGAAACTGAAGCAGCTGGGC.................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...............................GGCAGAGAAACTGAAGCAGT....................................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................AATCCCTGGAATTGG......................................................................................................................................................................................................................... 15 1 19 0.21 4 0 0 0 4 0 0 0 0 0 0 0
.........................................................................................................GGTAAGATTTGTAGC.................................................................................................................................. 15 1 16 0.13 2 0 0 0 0 0 0 0 0 0 2 0
...................................................................................TATATATATATTTTTTTTTGTGCGTA............................................................................................................................................. 26 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
..................ACTCCCTGGAATCGG......................................................................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................AACCGCTTCTTTCTCTA............................................................................................................................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................GGAGATGGCCGAGAGACTGA............................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TATATATATTTTTTTTTGTGCGTA............................................................................................................................................. 24 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
...................................TAGTAACTGAGGCAGGTGA.................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1
......................CCTGGAAGTGGCCGA..................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTTCAAATTCCACCTGATGAGGGACCTTAACCGGCTCTTTGACTTCGTCCACTCGTTTTGGTGAAGAAACAGATATATATACATATATATATATAAAAAAAAACCCATTCTCAACATCGAACGCGGATGGGTTAAATACGGTGTTAATTCGAGGTAAACCCCAGTCGAAAACACAAGGAACTGGGGGAAAACTATTATTCAGTTCAACGCACAACTTCATTCCTCGATTATTATCGCCATCGAGTTATT
*************************************************************...(((((......((.((.((.......)).))))......))))).....(((((((((......))....)))))))..*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
.........................CCTTAGCCGGCTCTTTG................................................................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................AAAAGAACCTATTCTCAACAGC................................................................................................................................... 22 3 7 0.57 4 4 0 0 0 0 0 0
...............................................................................................AAAAAAGAACCTATTCTCAAC...................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................................................TTGAAAACACAAGGAGCAGGG................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................TCATTCCTCTGTTATTATC.............. 19 2 4 0.25 1 0 0 1 0 0 0 0
...........................................................................................................................................CGGTGTCATTTCGAGGTA............................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0 0
................................................................................................AAAAAGAACCTATTCTCAACAGC................................................................................................................................... 23 3 6 0.17 1 1 0 0 0 0 0 0
.................................................TCACTCGTTTTGGTG.......................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 2 0 0
..............................................................................................................................................................................................................................GCTCGATAATTATGGCCAT......... 19 3 11 0.09 1 0 0 0 0 0 1 0
...................GAGGGACCTTGCCCGGCC..................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0
................................................................................................................................................................CCCGGTCGAGAACACA.......................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................CTCGATTATCATTGCCATT........ 19 3 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................ACGATGTCATTTCGAGGTA............................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................................................................................................CAAACTCTTATTCAGTTCC........................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14695252-14695501 + dsi_21251 CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGCAAAACCACT-------------------T--CTT----TGTCTATATATATGTATATA-----------------------------------------------------------TATA-------------TATTTTT-TTTT-GG--------------------------------------------------------------------GTAAGAGTTGTAG------CTT-GCGCC----T-----------------------------------ACCCAATTTATGCCACAATTAAGCTCCATTTGGGGTCAGCTTTTGT-------------------------GTTCCTTGACCCCCTTTT--GATA------------ATAAGTCAAGTTGCGTGT------TGAAGTAAG---GAGCTAATAATAGCG--GTAGCTCAATAA
droSec2 scaffold_1:11504644-11504893 + CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGAAAACTAACT-------------------TCA--TTAGGCGGCTGTA-----------------------------------------------------------------------TGTATTATGTATTATAT---TTTT-ATTTGAG--------------------------------------------------------------------GAAAGCGTTGTAG------CTT-GCGCC----C-----------------------------------ACCCAATTTATGCCACAATTGAGCTCCATTTGGGGTCAGCTTTTGT-------------------------GTTCCTTGACCCCCTTTT-----------------GATAAGTCAAGTTGCGTGT------TGAAGTAAG---GAGCTAATAATAGCG--GTAGCTCAATAA
dm3 chr2R:14014753-14014981 + CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTACATAT--------------------------------------------------------------------------------------------------------------------TAT-------------TTTTTTTTTTTGGGG--------------------------------------------------------------------GTGGGGGGGGTTG------ATT-GT-TC----C-----------------------------------ACCCAATTTATGCCACAATTAAGCTCCATTTGGGGTCAGCTTTTGT------TTTTATATAA-----CACAGTTCCTTGACCTCCATTT------------------------GATGTTGCGTGCTTAAGGTGAAGTTTG---GAGTTATTAATAGCA--GTAGCTCAATAA
droEre2 scaffold_4845:8233293-8233518 + CCAAGTTTAAGGTGGATTACTCCCTGGAATTGGCCGAGAAGCTGAAGCAGGTAAGGAAAACATCT-------------------TCA--ATAAGAGTCCCTA-----------------------------------------------------------------------TAAA-------------TACTTTT-TTGGGGG--------------------------------------------------------------------GAAAGCGTCGTTG------CTT-TCG-------------------------------------------------------CACAATTAAGCTCAATTCGGGGTCAGTTTTT--------TTTTACATAA-----CACAG-TCCTTGATTGCA--------------------------------TTGCGTGTTTGAGGTGAAGTAAG---AAGTTATAAATAGCG--GTAGCTCAATAA
droYak3 2R:15171749-15172000 - CCAAGTTCAAGGTGGACTACTCTCTGGAATTGGCTGAGAAGCTGAAGCAGGTAAGGAAAACCACT-------------------TCA--ATTAGTGTCCATA-----------------------------------------------------------------------AAAC-------------TACTTTTTTTGGGGG--------------------------------------------------------------------GAAAGTGTCGTAG------CTT-GCGCC----C-----------------------------------ACCCAATTTATGCCACAATTAAGCTCAAATCGGGGTCAATTTTTGTCAGCTATTTTACATAA-----CACAGCTCCTTGACCGCA--------------------------------TTGCGTGTTTGAGGTGAAGTAAG---GAGTTATAAATAGCG--GTAGCTCAATCA
droEug1 scf7180000409672:1080331-1080609 - CTAAGTTCAAGGTGGATTATTCCCTGGAATTGGCCGAAAAACTGAAGCAGGTAAGGACGAAGCTTTTAAT---------------------AAAGT-----------------------TTG------------------GAATTAAGAATTAG--------------------CCAAA---------------------------------------------------------------------------CA-----ACTT-AACAGAGGAAT------TCC------CTT-ATGCC----T-----------------------------------ACACCCGTTTTGACAA----AAGCTCAATTCATGGTCAACTTTCCC------TTTTACATAATTCGGCACAGTTCCTTGACCGCGTTTAATGAGAAATGCCTTCCTTATTAGTCAAGTAGGGTGGTTAAGGTTAAACAAG---AAGCTATAATTAGCA--GTAGCCCA----
droBia1 scf7180000301754:2523430-2523775 - CCAAGTTCAAGGTGGACTACTCCCTGGAACTGGCCGAGAAGCTGCAGCAGGTAAGGAATAAGCTCCTAAT---------------------AATGG-----------------------TTGAATAATGAACAAATGGATGGGTTTTGAATCAG--------------------CTATACCTATCC----------------------------------TAATTCCCAAATACCAAATAGTTAGCTTTCAACCCA-----AATG-TTCAGAGAAAT------TTA------CTT-TTGCA----C-----------------------------------ACCCATTATTAGACGACATTAAGCTCAATTCATGGTCAACTTTCGG------TTTTACATAACGTGACACAGTTCCTTGGCCGCATTTTCTGATAAATGACTTCCTTATAAGGCGTGTTGCGTGTCTGGGGTGAAATAAT---AAGTTATTATTAGCA--GTAGCGCACTAA
droTak1 scf7180000415795:373252-373505 + CCAAGTTCAAGGTGGATTACTCCCTAGAATTGGCCGAGAAACTGAAGCAGGTAAGCTGGAAATAC---------------------CTT------------------------------TT-------CT-----------------------------------------------------------------------------------------------------------------------------------------TCAGAAAAAT------TAG------CTTTATGGA----G-----------------------------------ACCCA-CATTCGACACAATTAAGCTCTGTTCATGGCCAACTTTCGT------TTTTACATAAT-TGTCCCAGTTCCTTGACCGCTTTTTCTGATAAATGACTTCCTTATAAGTCAAGTTGCGTGTTTAAGGTGAAATAAT---CAGCTATTATTAGCA--GTAGCCCACTAA
droEle1 scf7180000491214:187476-187728 - CTT----CTA------------------------------------------------------------------------------------TGCCTACAAAGATATATTTT-----------------T--------GAG-----------AACTTTTTATTGTGCCGTTTCTAT--------------------------TAT---------------------------------------TTTGACCGCA-----GCTGTAACAGAGAAAT------TAT------TTT-GGGCC----C-----------------------------------TGCCATTATTTGACAA----AAGCTCAATTCATGGTCAACTCTCGT------TTTTACATAAT-TGACATAGTTCCTTGACCGAGTTAAATGACAAATGGGTTCCTTATAAGTCAAGTTGCGTGTTTGGAGTGAAGCAAT---GGGCTATTATTAGCAAAGTAACCCACTAA
droRho1 scf7180000779949:92001-92343 - CCAAGTTCAAGGTGGATTACTCCCTGGAATTGGCCGAAAAACTGAAGCAGGTAAGGCAGTT-AAC---------------------GAT--------TATTGATC-------------------------GG------------------------------------------GAAACCCTGTCCCCAA---ATAT-TTGTATTATATAAACCATGAAGTACTGCCCAATTGACGCAAAGCCCGCTCTGAACTAT-----GAAG-TACAGAGAAAT------TTT------CTGTGGCCC----C-----------------------------------TGCCATTATTTTACCAAGTTAAACCCAATTTATGGTCAACTTTCGT------TTTTACATAT-TTGACATAGTTCCTTGACCGAGTTTTATGATAAATGGCTTCCTTATAAGTCAAGTTGCGTGTATGGGGTGAAATAAT---GACCTATTTTTAGCA--GTAGACCACTAA
droFic1 scf7180000453948:1422986-1423287 - CCAAGTTCAAGGTGGACTACTCTCTGGAGTTGGCCGAGAAACTTAAGCAGGTAAGGAAGAAGAATTTAAA-------------------------------GAAA-------------------------AG------------------------------------------ATATTCTCATCT-----------------------------------AACACA---------------------------------------AAAAAAGGAAA------ACCCAAATTCTT-TTGCAAAATAACACGCGTTATTAGGTGGAAAATTTATTTATTCCATTCCAATATA-------------------TCAAGGTTAACTTTCGC------TTTTACGTAATTTGACACCTTTTCTTGACCCAGTT-TACGACAAATGACTTCCTTATAAGTAAAGTTGCGTGTTTCGGGTGAAACAAT---AAGCTATAATTAGCA--GTAGCCCCTT-T
droKik1 scf7180000302385:1151418-1151618 - CAAAGTTCAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGGGAGGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-GCACC----------------------------------------------TTTTTGGTATAATTACACTTTATTCATGGTCAGCTTTCGC------CTTAACGTAGTTTGACATAGTTTTTTGACCCACTTTCATGATAAATGGTTT--------GGGTAGGTGCGTGCCTTT-GTGAAATTATTCGGATTT------AGTA--------------
droAna3 scaffold_13266:10184395-10184449 - CCAAGTTCAAAGTGGAGTACTCCTTGGACTTGGACCAGAAACTAAAAGAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396428:603914-603969 - CCAAATTCAAGGTGGAGTACTCCCTGGACTTGGATCAGAAACTGAAGGAGGTGAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:1047599-1047670 - CTAAGTTTAGAGTCGAATTTGAGCAGGAGTTGTCCTCAGCCTTTAAGAAGGTTAGCGTGGCTAAT---------------------CGT------------------------------TT-------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:1221230-1221301 - CTAAGTTTAGAGTCGAATTTGAGCAGGAGTTGTCCTCAGCCTTTAAGAAGGTTAGCGTGGCTAAT---------------------CGT------------------------------TT-------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004510:1200624-1200751 - CTAAATTCAAAGCCGAATTTGAAATGGAACTCACAGATGTATTTAAAAAGGTATGCATATAAATT---------------------TGT------------------------------GT-------GTTT--------AAATT----------------------------------------------------------------------------------GAGAGGTTGCTAATAGAT-TATGAATAATTTCAG-----TTGG---GTATGAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droVir3 scaffold_12875:20535968-20536025 + CCAAATTCAAGGTGGACTACTCCATCGAGCTGGCCGACAAGCTGCAGCAGGTGGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:4832747-4832865 + CCAAGTTCAGTGTCACTTTCGGCCTTAGCCTCGAGAAACCTTTCAAGCAGGTGCGATAGCAGTT---GAAGTAGTACAAGAAATT--CTT----AGTCTAACTCTATTGATCTATTCATCT-------GT-----------------------------------------------------------------TC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droGri2 scaffold_15245:11012922-11013052 - CCAAATTCAAGGTGGACTATTCCGTCGATCTGGGCGACAAACTGAAGCAGGTGAGCAATTCTC-----------------------A--AT------TTATGAAT-------------------------AC------------------------------------------AAATTCTTTTCTTTAT---TTTT-TTTTATT----------------------GACA-----------------------------------------------CGTCGCTA------ATC-GCGTC----T-----------------------------------AATCAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGCAAAACCACT-------------------T--CTT----TGTCTATATATATGTATATA-----------------------------------------------------------TATA-------------TATTTTT-TTTT-GG--------------------------------------------------------------------GTAAGAGTTGTAG------CTT-GCGCC----T-----------------------------------ACCCAATTTATGCCACAATTAAGCTCCATTTGGGGTCAGCTTTTGT-------------------------GTTCCTTGACCCCCTTTT--GATA------------ATAAGTCAAGTTGCGTGT------TGAAGTAAG---GAGCTAATAATAGCG--GTAGCTCAATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................CCCTGGAATTGGCCGAGAAACTGAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
........................TGGAATTGGCCGAGAAACTGAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------GTTCCTTGACCCCCT......................................................................................1811.00100001000000000000
......................CCTGGAATTGGCCGAGAAACTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..................................................................................................................................................................................................................................................................................TAAGAGTTGTAG------CTT-GCGCC----T-----------------------------------............................................................................................................................................................................2111.00101000000000000000
................CTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............GACTACTCCCTGGAATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000000100
.....................CCCTGGAATTGGCCGAGAAACTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
..............GACTACTCCCTGGAATTGGCCGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
droSec2
CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGAAAACTAACT-------------------TCA--TTAGGCGGCTGTA-----------------------------------------------------------------------TGTATTATGTATTATAT---TTTT-ATTTGAG--------------------------------------------------------------------GAAAGCGTTGTAG------CTT-GCGCC----C-----------------------------------ACCCAATTTATGCCACAATTGAGCTCCATTTGGGGTCAGCTTTTGT-------------------------GTTCCTTGACCCCCTTTT-----------------GATAAGTCAAGTTGCGTGT------TGAAGTAAG---GAGCTAATAATAGCG--GTAGCTCAATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............GACTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
....................................AGAAACTGAAGCAGGTGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
................CTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
CCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTACATAT--------------------------------------------------------------------------------------------------------------------TAT-------------TTTTTTTTTTTGGGG--------------------------------------------------------------------GTGGGGGGGGTTG------ATT-GT-TC----C-----------------------------------ACCCAATTTATGCCACAATTAAGCTCCATTTGGGGTCAGCTTTTGT------TTTTATATAA-----CACAGTTCCTTGACCTCCATTT------------------------GATGTTGCGTGCTTAAGGTGAAGTTTG---GAGTTATTAATAGCA--GTAGCTCAATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................TCCCTGGAATTGGCCGAGAAACTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001000000000000000000000000000000000000000000000013100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................CCCTGGAATTGGCCGAGAAACTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................CCCTGGAATTGGCCGAGAAACTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AATTGGCCGAGAAACTGAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.....................CCCTGGAATTGGCCGAGAAACTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000
..............GACTACTCCCTGGAATTGGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
....................TCCCTGGAATTGGCCGAGAAACTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................TCCCTGGAATTGGCCGAGAAACTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTGGCCGAGAAACTGAAGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
........................TGGAATTGGCCGAGAAACTGAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCTTAAGGTGAAGTTTG---G............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GGGGGGTTG------ATT-GT-TC----C-----------------------------------G...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................CTCCCTGGAATTGGCCGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATTGGCCGAGAAACTGAAGCAGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTTCCTTGACCTCCAT.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTATGCCACAATTAAGCTCCATTTGGG..........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGGACTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.......TAAGGTGGACTACTCCCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTAAGGTGGACTACTCCCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTAAGGTGGACTACTCCCTGGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCCCTGGAATTGGCCGAGAAACTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCTTAAGGTGAAGTT..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAAGGTGAAGTTTG---G............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTGGGG--------------------------------------------------------------------GTGGGGGGGGTTG------.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................ACTCCCTGGAATTGGCCGAGAAACTGAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCCCTGGAATTGGCCGAGAAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................GGAATTGGCCGAGAAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GGAATTGGCCGAGAAACTGAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTACTCCCTGGAATTGGCCGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................TCCCTGGAATTGGCCGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CGAGAAACTGAAGCAGGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTTGGGG--------------------------------------------------------------------GTGGGGGGGGT.....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCCGAGAAACTGAAGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------GATGTTGCGTGCTTAAGGTG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCTGGAATTGGCCGAGAAACTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTAAGGTGAAGTTTG---GAA..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................CCCTGGAATTGGCCGAGAAACTGAAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......TTAAGGTGGACTACTCCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTACTCCCTGGAATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............ACTACTCCCTGGAATTGGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------GATGTTGCGTGCTTAAGGTG.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
....GTTTAAGGTGGACTACTCCCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ACTGAAGCAGGTACATAT--------------------------------------------------------------------------------------------------------------------TAA-------------A..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---GAGTTATTAATAGCA--GTAG........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTTTAAGGTGGACTACTCCCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GAGAAACTGAAGCAGGTACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTACTCCCTGGAATTGGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................T--------------------------------------------------------------------------------------------------------------------TAT-------------TTTTTTTTTTTGGGG--------------------------------------------------------------------................................................................................................................................................................................................................................................1930.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................TAT-------------TTTTTTTTTTTGGGG--------------------------------------------------------------------G...............................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
CCAAGTTTAAGGTGGATTACTCCCTGGAATTGGCCGAGAAGCTGAAGCAGGTAAGGAAAACATCT-------------------TCA--ATAAGAGTCCCTA-----------------------------------------------------------------------TAAA-------------TACTTTT-TTGGGGG--------------------------------------------------------------------GAAAGCGTCGTTG------CTT-TCG-------------------------------------------------------CACAATTAAGCTCAATTCGGGGTCAGTTTTT--------TTTTACATAA-----CACAG-TCCTTGATTGCA--------------------------------TTGCGTGTTTGAGGTGAAGTAAG---AAGTTATAAATAGCG--GTAGCTCAATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............GATTACTCCCTGGAATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0033000000
....GTTTAAGGTGGATTACTCCCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021001000
...AGTTTAAGGTGGATTACTCCCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
......TTAAGGTGGATTACTCCCTGGAATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
................................................................................................................................................................................A-------------TACTTTT-TTGGGGG--------------------------------------------------------------------GAAAG...........................................................................................................................................................................................................................................2011.0011000000
............................ATTGGCCGAGAAGCTGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...........GTGGATTACTCCCTGGAATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
................TTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................TTACTCCCTGGAATTGGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..AAGTTTAAGGTGGATTACTCCCTGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................ATTGGCCGAGAAGCTGAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................CCCTGGAATTGGCCGAGAAGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
......TTAAGGTGGATTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
...............ATTACTCCCTGGAATTGGCCGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............GATTACTCCCTGGAATTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..................ACTCCCTGGAATTGGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
CCAAGTTCAAGGTGGACTACTCTCTGGAATTGGCTGAGAAGCTGAAGCAGGTAAGGAAAACCACT-------------------TCA--ATTAGTGTCCATA-----------------------------------------------------------------------AAAC-------------TACTTTTTTTGGGGG--------------------------------------------------------------------GAAAGTGTCGTAG------CTT-GCGCC----C-----------------------------------ACCCAATTTATGCCACAATTAAGCTCAAATCGGGGTCAATTTTTGTCAGCTATTTTACATAA-----CACAGCTCCTTGACCGCA--------------------------------TTGCGTGTTTGAGGTGAAGTAAG---GAGTTATAAATAGCG--GTAGCTCAATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............GGACTACTCTCTGGAATTGGCTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00400000000004
..............GACTACTCTCTGGAATTGGCTGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.......................CTGGAATTGGCTGAGAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........AGGTGGACTACTCTCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................CTCTGGAATTGGCTGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..................ACTCTCTGGAATTGGCTGAGAAGCTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......CAAGGTGGACTACTCTCTGGAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
CTAAGTTCAAGGTGGATTATTCCCTGGAATTGGCCGAAAAACTGAAGCAGGTAAGGACGAAGCTTTTAAT---------------------AAAGT-----------------------TTG------------------GAATTAAGAATTAG--------------------CCAAA---------------------------------------------------------------------------CA-----ACTT-AACAGAGGAAT------TCC------CTT-ATGCC----T-----------------------------------ACACCCGTTTTGACAA----AAGCTCAATTCATGGTCAACTTTCCC------TTTTACATAATTCGGCACAGTTCCTTGACCGCGTTTAATGAGAAATGCCTTCCTTATTAGTCAAGTAGGGTGGTTAAGGTTAAACAAG---AAGCTATAATTAGCA--GTAGCCCA----SizeHit CountTotal NormTotal
No Reads
droBia1
CCAAGTTCAAGGTGGACTACTCCCTGGAACTGGCCGAGAAGCTGCAGCAGGTAAGGAATAAGCTCCTAAT---------------------AATGG-----------------------TTGAATAATGAACAAATGGATGGGTTTTGAATCAG--------------------CTATACCTATCC----------------------------------TAATTCCCAAATACCAAATAGTTAGCTTTCAACCCA-----AATG-TTCAGAGAAAT------TTA------CTT-TTGCA----C-----------------------------------ACCCATTATTAGACGACATTAAGCTCAATTCATGGTCAACTTTCGG------TTTTACATAACGTGACACAGTTCCTTGGCCGCATTTTCTGATAAATGACTTCCTTATAAGGCGTGTTGCGTGTCTGGGGTGAAATAAT---AAGTTATTATTAGCA--GTAGCGCACTAASizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGTTCAAGGTGGATTACTCCCTAGAATTGGCCGAGAAACTGAAGCAGGTAAGCTGGAAATAC---------------------CTT------------------------------TT-------CT-----------------------------------------------------------------------------------------------------------------------------------------TCAGAAAAAT------TAG------CTTTATGGA----G-----------------------------------ACCCA-CATTCGACACAATTAAGCTCTGTTCATGGCCAACTTTCGT------TTTTACATAAT-TGTCCCAGTTCCTTGACCGCTTTTTCTGATAAATGACTTCCTTATAAGTCAAGTTGCGTGTTTAAGGTGAAATAAT---CAGCTATTATTAGCA--GTAGCCCACTAASizeHit CountTotal NormTotal
No Reads
droEle1
CTT----CTA------------------------------------------------------------------------------------TGCCTACAAAGATATATTTT-----------------T--------GAG-----------AACTTTTTATTGTGCCGTTTCTAT--------------------------TAT---------------------------------------TTTGACCGCA-----GCTGTAACAGAGAAAT------TAT------TTT-GGGCC----C-----------------------------------TGCCATTATTTGACAA----AAGCTCAATTCATGGTCAACTCTCGT------TTTTACATAAT-TGACATAGTTCCTTGACCGAGTTAAATGACAAATGGGTTCCTTATAAGTCAAGTTGCGTGTTTGGAGTGAAGCAAT---GGGCTATTATTAGCAAAGTAACCCACTAASizeHit CountTotal NormTotal
No Reads
droRho1
CCAAGTTCAAGGTGGATTACTCCCTGGAATTGGCCGAAAAACTGAAGCAGGTAAGGCAGTT-AAC---------------------GAT--------TATTGATC-------------------------GG------------------------------------------GAAACCCTGTCCCCAA---ATAT-TTGTATTATATAAACCATGAAGTACTGCCCAATTGACGCAAAGCCCGCTCTGAACTAT-----GAAG-TACAGAGAAAT------TTT------CTGTGGCCC----C-----------------------------------TGCCATTATTTTACCAAGTTAAACCCAATTTATGGTCAACTTTCGT------TTTTACATAT-TTGACATAGTTCCTTGACCGAGTTTTATGATAAATGGCTTCCTTATAAGTCAAGTTGCGTGTATGGGGTGAAATAAT---GACCTATTTTTAGCA--GTAGACCACTAASizeHit CountTotal NormTotal
No Reads
droFic1
CCAAGTTCAAGGTGGACTACTCTCTGGAGTTGGCCGAGAAACTTAAGCAGGTAAGGAAGAAGAATTTAAA-------------------------------GAAA-------------------------AG------------------------------------------ATATTCTCATCT-----------------------------------AACACA---------------------------------------AAAAAAGGAAA------ACCCAAATTCTT-TTGCAAAATAACACGCGTTATTAGGTGGAAAATTTATTTATTCCATTCCAATATA-------------------TCAAGGTTAACTTTCGC------TTTTACGTAATTTGACACCTTTTCTTGACCCAGTT-TACGACAAATGACTTCCTTATAAGTAAAGTTGCGTGTTTCGGGTGAAACAAT---AAGCTATAATTAGCA--GTAGCCCCTT-TSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAGTTCAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGGTGAGGGAGGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-GCACC----------------------------------------------TTTTTGGTATAATTACACTTTATTCATGGTCAGCTTTCGC------CTTAACGTAGTTTGACATAGTTTTTTGACCCACTTTCATGATAAATGGTTT--------GGGTAGGTGCGTGCCTTT-GTGAAATTATTCGGATTT------AGTA--------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCAAGTTCAAAGTGGAGTACTCCTTGGACTTGGACCAGAAACTAAAAGAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........AGTGGAGTACTCCTTGGACTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002002000
...........GTGGAGTACTCCTTGGACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................CCTTGGACTTGGACCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
....GTTCAAAGTGGAGTACTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................CTTGGACTTGGACCAGAAACTAAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........AGTGGAGTACTCCTTGGACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................ACTCCTTGGACTTGGACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........AAGTGGAGTACTCCTTGGACTTGGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................GTACTCCTTGGACTTGGACCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
droBip1
CCAAATTCAAGGTGGAGTACTCCCTGGACTTGGATCAGAAACTGAAGGAGGTGAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTAAGTTTAGAGTCGAATTTGAGCAGGAGTTGTCCTCAGCCTTTAAGAAGGTTAGCGTGGCTAAT---------------------CGT------------------------------TT-------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTAAGTTTAGAGTCGAATTTGAGCAGGAGTTGTCCTCAGCCTTTAAGAAGGTTAGCGTGGCTAAT---------------------CGT------------------------------TT-------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CTAAATTCAAAGCCGAATTTGAAATGGAACTCACAGATGTATTTAAAAAGGTATGCATATAAATT---------------------TGT------------------------------GT-------GTTT--------AAATT----------------------------------------------------------------------------------GAGAGGTTGCTAATAGAT-TATGAATAATTTCAG-----TTGG---GTATGAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........GCCGAATTTGAAATGGAACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
................................................................................................................................GTTT--------AAATT----------------------------------------------------------------------------------GAGAGGTTGCT...................................................................................................................................................................................................................................................................................2011.00100100
..................TTGAAATGGAACTCACAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.......CAAAGCCGAATTTGAAATGGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...........GCCGAATTTGAAATGGAACTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
...............AATTTGAAATGGAACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
CCAAATTCAAGGTGGACTACTCCATCGAGCTGGCCGACAAGCTGCAGCAGGTGGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............GACTACTCCATCGAGCTGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000100000000000000000000000000000000000000000000000
........AAGGTGGACTACTCCATCGAGCTGGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.002000000000000000000000000000000000000000000000000000000000000002
...AATTCAAGGTGGACTACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.....................CCATCGAGCTGGCCGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
..............GACTACTCCATCGAGCTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
....ATTCAAGGTGGACTACTCCATCGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
......TCAAGGTGGACTACTCCATCGAGCTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
.............GGACTACTCCATCGAGCTGGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
CCAAGTTCAGTGTCACTTTCGGCCTTAGCCTCGAGAAACCTTTCAAGCAGGTGCGATAGCAGTT---GAAGTAGTACAAGAAATT--CTT----AGTCTAACTCTATTGATCTATTCATCT-------GT-----------------------------------------------------------------TC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCAAATTCAAGGTGGACTATTCCGTCGATCTGGGCGACAAACTGAAGCAGGTGAGCAATTCTC-----------------------A--AT------TTATGAAT-------------------------AC------------------------------------------AAATTCTTTTCTTTAT---TTTT-TTTTATT----------------------GACA-----------------------------------------------CGTCGCTA------ATC-GCGTC----T-----------------------------------AATCAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:21 AM