ID:

dsi_21247

Coordinate:

2r:4794909-4794964 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-8.8	-8.8	-8.6

Flybase annnotation

exon [2r_4794804_4794908_+]; CDS [2r_4794804_4794908_+]; CDS [2r_4794965_4795125_+]; exon [2r_4794965_4795125_+]; intron [2r_4794909_4794964_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------################################################## GCGCCGTTTCTACCGGCTACTGCATAGGCGTTATCAATGCCCCCTCGAAGGTGAGATATGGAGAACCACAGCGAGTGGAACACCGATTCAAACGATATCTTTACAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGACACCTACGGAAGTAA ************************************************(((((((((((....((((.....))))....))..........))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
..................................................GTGAGATATGGAGAACCAC.......................................................................................	19	0	1	1.00	1	0	0	1	0	0
...............GCTACTGCATAGGCGTT............................................................................................................................	17	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................GCACGACACCTACGGAA....	17	0	1	1.00	1	0	0	0	1	0
.....................................................................AGCGCGTGGAACACCGA......................................................................	17	1	1	1.00	1	0	1	0	0	0
........................................................TATGGAGAACCACAGCAAA.................................................................................	19	2	5	0.20	1	1	0	0	0	0
...........................................................................................................TTATGAAAGTTTGTTGTA...............................	18	2	20	0.10	2	0	2	0	0	0
.....................................................................................................TACAGATGATGAAAGTA......................................	17	2	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

CGCGGCAAAGATGGCCGATGACGTATCCGCAATAGTTACGGGGGAGCTTCCACTCTATACCTCTTGGTGTCGCTCACCTTGTGGCTAAGTTTGCTATAGAAATGTCGACTACTTTCAAACCACATTAGTCTGGGACGTGCTGTGGATGCCTTCATT ************************************************(((((((((((....((((.....))))....))..........))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M024 male body	M023 head
........................................................................................................TCGAGTACTTTCAACCAACATT..............................	22	3	1	1.00	1	1	0	0
...........................................................CCACTTGGTGTCGCTGAGCT.............................................................................	20	3	6	0.17	1	0	0	1
...........................................................................................TGCTATAGAACTGTCAAC...............................................	18	2	8	0.13	1	0	1	0
....................................................................................CTAACGTTGCTATAGAAA......................................................	18	2	8	0.13	1	0	1	0
..............CCCAAGTCGTATCCGCAA............................................................................................................................	18	3	20	0.05	1	0	0	1

Generated: 04/23/2015 at 04:57 AM