ID:

dsi_21234

 Coordinate:

2r:5597212-5597263 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5597021_5597211_-]; exon [2r_5596937_5597211_-]; CDS [2r_5597264_5597678_-]; exon [2r_5597264_5597743_-]; intron [2r_5597212_5597263_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------##################################################
GGCTGCAGAGGCACAGTCGGCGCCTCCAACAGCAGAGACCAATGGCAAAGGTAGTTCGTTAGTTATCATCAGGGTTCACTTGTAACTATGCATGTTTTACAGCTCCACCTGCAACCAAAGCGCCGGTACCGGCGAATTCCGCCAAGGACGGC
**************************************************((((..(((((((((....((((.....))))))))))...)))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
....................................................................................................................................CGAATTCCGCTAAGGA.... 16 1 1 2.00 2 1 0 0 1 0 0 0 0 0
..................................................................................................................................GTCGAATTCCGCTAAGGA.... 18 2 2 1.50 3 3 0 0 0 0 0 0 0 0
.......................CTCCAACAGCAGAGACCAATGGC.......................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...TGCAGAGGCACAGTCGGCGTTT............................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0
......AGAGGCACAGTCGGCGCC................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............AGTCGGCGCCTCCAACAGCAGA.................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................TACCGGCGAATTCCGCCAAGGACGGC 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................GAGACCAATGGCAAAG...................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................CGAATTCCGCCAAGGACGG. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................TCAGGGTTCACTTGGA.................................................................... 16 1 6 0.33 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................GTCGAATTCCGCTAAGG..... 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0
......AGAAGCACAGTCGCGGCCTC.............................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0
...............................GCAGAGACCAGTGGTAA........................................................................................................ 17 2 10 0.10 1 0 0 0 1 0 0 0 0 0
............................ACAGCAGCGGCCAATGGC.......................................................................................................... 18 2 13 0.08 1 0 1 0 0 0 0 0 0 0
......................................................................................................CTCCCCCTGCAACCA................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................GGCGAAATCCGCTAAGGAG... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0
..........GCACAGTCGGAGCCACC............................................................................................................................. 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0
..................................CGGACCAATGGCACAGGT.................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
......ATAGGCACAGCCGGCG.................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.....CAGAGGGACAGTCGGGGGC................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCGACGTCTCCGTGTCAGCCGCGGAGGTTGTCGTCTCTGGTTACCGTTTCCATCAAGCAATCAATAGTAGTCCCAAGTGAACATTGATACGTACAAAATGTCGAGGTGGACGTTGGTTTCGCGGCCATGGCCGCTTAAGGCGGTTCCTGCCG
**************************************************((((..(((((((((....((((.....))))))))))...)))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................CGTACAAAATGTCGAGGTGGA.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................AGGTTGTCGTCTCTGGTTAC............................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0
.CGAAGTCTCCGTGTCA....................................................................................................................................... 16 1 1 1.00 1 0 0 0 1 0 0 0 0
.................................................CCATCAAGCAATCAATAGTA................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................CAAAATGTCGAGGTGGACGTT...................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................TTTCGCCGCCACGGCCCCTTA............... 21 3 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................CTATAGTAGTCCCAAATGC........................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 1 0
....................................................................................................TCGAGGTGTACATTGG.................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 06:15 PM