ID:

dsi_21217

 Coordinate:

2l:12030018-12030265 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.8 -16.6 -16.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAATATGGCAAATTAATTAGTTATACAAAAATGGTAGACCATAAAACGCCGTGCTGAAAAATAGTGAAACGCTCGCGTGTGTGTATGTGTGTGTGCAAATAAAATTCAAATTATGCACAAGTGAATAATTGTGGCATTTTAATGGCGGCCCTTGCTAATAAAATTGCAAATAAAATATTGCCTTTCGTTTTTAATTTAGCCCAGGAGGCCCATAAAAAAGCCAAGCAAAGTTTCAGTTAGACAAAAATATTTGAGCCCTTTGACCAATTTTTTTGTATGTGCTGTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAAATATCATGGAATGTGGCAATTC
**************************************************.((((((((..........((((.((((((....)))))).))))..........)))).......(((((........))))))))).........********************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
..........................................TAAAACGCCGTACTGAAAAATAGTGA........................................................................................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..................................................CGTGCTGAAAAATAGTGAAACGCTCGCG.............................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................TGAATAATTGTGGCATTTTAATGGC......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AGCGGCCAATAAATAACATGAAAAACCCA....................... 29 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................TGGGCTGTGGCGCCATCTGGCG................................................ 22 2 1 1.00 1 0 1 0 0 0 0
..................................GTAGACGATAAAACG........................................................................................................................................................................................................................................................................................................... 15 1 9 0.56 5 0 0 0 5 0 0
.......................................................................................................................................................................................................................................................................................................TTGCGGCCAATCAATAAC................................... 18 2 6 0.17 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................CTGTGGCACCATCTA................................................... 15 1 11 0.09 1 0 1 0 0 0 0
..................................GTAGACTATAAAACG........................................................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................TATGCTGTGGCGCCA....................................................... 15 1 15 0.07 1 0 0 0 0 0 1
................................TAGTAGACGATAAAACG........................................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0

Anti-sense strand reads

TGTTATACCGTTTAATTAATCAATATGTTTTTACCATCTGGTATTTTGCGGCACGACTTTTTATCACTTTGCGAGCGCACACACATACACACACACGTTTATTTTAAGTTTAATACGTGTTCACTTATTAACACCGTAAAATTACCGCCGGGAACGATTATTTTAACGTTTATTTTATAACGGAAAGCAAAAATTAAATCGGGTCCTCCGGGTATTTTTTCGGTTCGTTTCAAAGTCAATCTGTTTTTATAAACTCGGGAAACTGGTTAAAAAAACATACACGACACCGCGGTAGATCGCCGGTTATTTATTGTACTTTTTGGGTTTATAGTACCTTACACCGTTAAG
*********************************************************************************************************************************************************************************************************.((((((((..........((((.((((((....)))))).))))..........)))).......(((((........))))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................TTTTGCAGCAGGACTTATTAT............................................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0
................................................................................................GTTAATTTCAAGTCTAATACGT...................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0
............................................................................................................................................................................................................................................................TCTCGGGAAACTGGCTAAGA............................................................................ 20 3 5 0.20 1 0 0 1 0
........................................................................................................................................................................................AAGCAAAAATTAAATTG................................................................................................................................................... 17 1 17 0.06 1 0 0 0 1
...........................................TTTTGCAGCAGGACTTATT.............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0
............................................................................................................................................................................................AAAAATCAAATAGGGTCCTA............................................................................................................................................ 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12029968-12030315 + dsi_21217 A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTGTA---------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCCAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTGG---------CAATTC
droSec2 scaffold_16:564409-564756 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTGTA---------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCCAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTGG---------CAATTC
dm3 chr2L:12373385-12373731 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AAA-------AAAGCCAAGCAAAATTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAC--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTC
droEre2 scaffold_4929:13042535-13042887 - A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGTGCG---------TG--T----------------------------------GTGTGT--------------------------------------GCGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGACCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTA--AGCCCTT-CGA-CCAACC-AA-T-TTT-TT-----G--------------------TAT--GT-----GC---------T-GGTGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTC
droYak3 2L:8808854-8809203 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTA----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGT-------------G--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------TAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AAA--AACC-AAAGCAAAGCAAAGTTTCATT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-C---G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTC
droEug1 scf7180000409122:759745-760126 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAC---C-----------------AAACG-------------------------------------------AA--------A---T---------CG--------------------------------TG----TGTGTG---------------T-----------------GTTCGTGT-TTGTGTTTGTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCTTTTC---GTTTTTAATTTAGCCCTGGAGGCCCATTAAAA-------AAAACCAAGCAAAGTTTTAGC---------TAGACCAAAAAA-----TAT-ATTCCA--AACCCTT-CGA-CC--CTAAA-T-TTTTT--C---G----TGTGT--------TCGTGCGTGTGT---GC---------A-GTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTC
droBia1 scf7180000302422:610705-611041 - A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGTG---------CG-------------------------------------------------------TGTGT----------------------------------GTGTGC---------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--GTAATGGCAGCCCTT--GCT-----------------------------------------T-------------------------ATA-----------------------------------T-------------------------------------------AAGTAC----------AAATAAA------------------------ATATTGCTGTTC---GTTTTTAATTAAGCCCAGGAGGCCTATA-AA--------AAAGCAAACCAAAGTTTTAGC---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-CGC-CC------A-T-TTTTT--C---G--------------------CGTGTGT-----------------GCTGGCGCCATCTTGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAGTG------------CAATTC
droTak1 scf7180000415865:230786-231136 - A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGT---AGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGCG---------CT--------------------------------TA----TGTGTG-----------AG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCTTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGA---------TAGAC--AAAAA-----TA----TTTG--AACCCTT-CGA-AC-----GT-T-TTTTTT-CGTCG--------------------TGT--TT---------------GTGGTGGCGCCAGCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCAG---------TAATTC
droEle1 scf7180000491028:2749243-2749581 - A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAG-AGC---TGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGC---------------------------------------------G---------------------TG--T----------------------------------GTGTGA---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGTCCTA--GCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCCTATC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGC---------TAGAC--AAAAG-----TT----TTTA--AGCCCTT-CGA-CC--C--CA-TTTTT-TT-C---G--------------------TGT--GT-----GC----------GGTGGCGCCATCTAGCGGTTAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTAG---------CAGTTC
droRho1 scf7180000780043:216501-216836 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAGAGTT-----------------------------------------------------------------AA--------GCGC---------------------------------------------G---------------------TG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTACCCTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGC---------TAGAC--AAAAT-----TA----TTTG--AACCCTT-CGA-CC--------TTTTT-TT-C---G--------------------TGTGTGT-----------------GCTGGCGCCATCTAGCGCGCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCAG---------CAGTTC
droFic1 scf7180000454015:250800-251160 + A-----------CGATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AAAAAGAGTG-----------------------------------------------------------------AA--------ACGCG-ATGGTATTTG--------------------------------TG----TGTGTGTG---------TA--T----------------------------------GTGTGT---------------------------------------GCCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------GTATGGCTTTTC---GTTTTTAATTTAGCCCTGGAGGCCCATA-AA--------AAAGCAAAGTAAAGTTTTAGC---------TAGAC--AAAAG-----TA----TTTG--AACCCTT-CGA-CC--------TTTTT-TT-C---G--------------------TGAGTGT-----GC--------GTGTTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATTATGGAATGCAG---------CAGTTC
droKik1 scf7180000301476:468919-469283 + A-----------CAATATGGCAAATTAATTAGTTATATACAAAAATGG--------------CGT---TGTCCTA----------AAAAAAA-AAGAGTG-----------------------------------------------------------------AA-ATATCAA-C-------------G--------------------------------CGTGTGT-TATGTG---------TG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTTGTGCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGGTTTTC---GTTTTTAATATAGCCCAGGAGGCCCATA-AA--------CCAGCAAATCCAAGTTTTAGC---------TAAATCGAAAAA-----TACGATTCTC--AACCCTT-CGA-AG-----TA-T-TTTTTT-CCTCG--------------------TGCGTGT-----GG---------T-TTGGCGCCAACTAGCGACCAATAAATAAAATGAAAAATCCAA------ATATCATGGAATGCAG------CAGCAATTC
droAna3 scaffold_12916:13023285-13023705 - G-----------AAACATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAGA-GAG---TGGGCTAG-GGCTAACAAAA--AA-AATAG-------------------------------------------------------------------AAAATATCAAATG------GTTATTG--------------------------------TG----TGTGCG--------------------------GCGGTGTGT-CGTGTGTCGTGTGTCGGTGC---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCG-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------ATATAAA------------------------ATATTGGTTTTT---GTTTTTAATTTAGCCCACGAGGCCCATA-AA--------CAAGCAAAGCAAAGTTCTAGTCCAACAAACTAAAC--AAAAAAAAGAGGCA--CTCGGTAGCCCTT-TGAAAG-----AA-T-TTTTTT-----T----TTCGG--------TTTTGGTCGT-----TT--------GTCGTGGCGCCATCTAGCGGGCAATAAATAACATGAAAAACCTAA------ATGTCGTGGAATGCAG------CAGCAATGC
droBip1 scf7180000396580:495113-495485 + G-----------AAACATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCGTAAGA-GAG---TGGGCTA----------A----AA-AATAGA-------------------------------------------------------------------AAATACCAAACG------GTTATTG--------------------------------TG----TGTGCGT----------TG--T--------------------------------GTCGGTGC---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCG-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------ATATAAA------------------------ATATTGGTTTTT---GTTTTTAATTTAGCCCACGAGGCCCATA-AA--------CAAGCAAAGCAAAGTTTTAGCCCAGCAACCTAAAC--AAAAA----AGGCG--CTCGGTAGCCCTT-TGA-TA--C---TTTTTTT-TT-C---G--------------------TC----T---------------GTCGGGGCGCCATCTAGCGGGCAATAAATAACATGAAAAACCCAA------ATATCGTGGAATGCAG---------CAATGC
dp5 4_group3:5724121-5724514 - A-----------GAATATGGCAAATTAATTAGTTA--TACGAAAATGGCAGGACCATAAAAACGC---CGTGCAAATCGCTTGCAAAAAAAG-AAGAGTG-----------------------------------------------------------------AAAATATCAAATG------GCTTTTG-----------------------------------------------------------TG---T-----------------------------GTGGAT---------------------------------------TGCAAATA-AAATTCAAATTATCCACAAGTGAATAATTGTGGCAT------------T--TTAATGG---CCCTT--GCCCCCCGCACCACGCACCCCGACCTCCCCTCCAAATAAACGAAA-------------------------ATA-----------------------------------A-------------------------------------------AAT-A-----------AAATA-A------------------------ATATTGGTTTTTTTAGTTTTTAATATAGCCCAGGAGGCCCATA-AAACAAACGAAAAACAAA-TAAAATTTCG--------------------------------------------CTTTTGA---------A-T-TTTTTAAC---G--------------------T----GT-----GCTCACT---GTCGTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTC
droPer2 scaffold_1:7215393-7215786 - A-----------GAATATGGCAAATTAATTAGTTA--TACGAAAATGGCAGGACCATAAAAACGC---CGTGCAAATCGCTTGCAAAAAAAG-AAGAGTG-----------------------------------------------------------------AAAATATCAAATG------GCTTTTG-----------------------------------------------------------TG---T-----------------------------GTGGAT---------------------------------------TGCAAATA-AAATTCAAATTATCCACAAGTGAATAATTGTGGCAT------------T--TTAATGG---CCCTT--GCCCCGCGCATCACGCACCCCGCCCTCCCCTCCAAATAAACGAAA-------------------------ATA-----------------------------------A-------------------------------------------AAT-A-----------AAATA-A------------------------ATATTGGTTTTTGTAGTTTTTAATATAGCCCAGGAGGCCCATA-AAACAAACTAAAAACAAA-TAAAATTTCG--------------------------------------------CTTTTGA---------A-T-TTTTTAAC---G--------------------T----GT-----GCTCACT---GTCGTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTC
droWil2 scf2_1100000004521:10105778-10106257 + AAACCTATATAACAATATGGCAAATTAATTAGTTA--TACAAAAATGGAC-GACCATAAAA-AAT---TGTGAAAATCAAAAAC---------------A-----------------AAAAA-------------------------------------------AA--------A---A---------TG--------------------------------TG----CAA-----AAAAATAGATA--TATATATTTTGATGGTTTAT-TTTTTGTTGGTTTTTTCTAT---------------------------------------AGCGAATA-AAATACAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCTAA--ATA-----------------------------------AATAAATATAT-------------ATATGCATATAGACAGAAAAAGAGAGAGCGAGAGAGACAGAGTGAAAAAGT----------------------------------------ATTG------------AAAAAA------------------------ATATT-CATTTT---AATTTTAATATAGCCCAAGAGGGCCATA-AA--------AA-------CAACGTTTACAA-----------------AACA-----TAA-CAACAA--AATCCAA-CAA-CA-----AA-T--ACCGT-GTCTGTGCCTGTGTGTGTGTG----T----GAGTGTAGTGCATT---GTGGTGGCGCCATCTAGCGGCCCATAAATATTATGAAAAATCCAA------CTATCATGGAATGCAGCTTAAGCAACAATAA
droVir3 scaffold_12963:17477506-17477938 + G-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGCA-GACCATGAAA-AAAAAGTGTGCGA----------C----AA-CA-------------------------------------------ACAACCACAAAGTTTATAATAAGAATGCA--------ACACG---------CG--------------------------------CG--------------------------------------------------------------GCGTATTAAAATTAAATTACAAAAATAAAAAAAAAAAGGAATAAACATATAAAAGTTCAAATTATGCACAAGTGAATAATTGTGGTATATTTT-------TTTATAATGGCAGCTCAC--ACT------------------------------AAATAAATAGAAACATGTTTACGTAAACTACATGCATATAT-------------------------------------GT----------------------------------------ATTT------------AAAAAAATAATAATAAAAATAAACATAATAATATAGC-TTGC---A-TTTTAATATAGCCCAAGAGGCTCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCCTT-C----------------TG-TT-T---G--------------------TGTGTGT-----GT--------GT-GTGGCGCCAAGTACGGGCGCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGG
droMoj3 scaffold_6500:22523637-22523912 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-AAACTCAAATTATACACCAGTGAATAATTGTGGTATTTTTTGTTGATCTTTTTAATTGTAGCGGA----------------------------------------------AAACATGTTCATTTAAATTACATGCAAAA----------------------------------------------------------------------------------ATATAAATAAATTTTAATATA------------------------ATAGAGCATTGC---A-TTTTAATATAGCCCAAGAGGCTCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCC-T-CGC-CG--------T-----G--G---G----TGTGTGTGAGTG----T----GT-----GTGTATTTGAGT-GCGGCGCCATCTAGCGGCCCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGG
droGri2 scaffold_15252:14911904-14912367 + A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGAA-GACCATTAAA-AAA---T-------------CCAAAAAAAA-GCGAGTGAAAATCAACAAAAAACAATAATAATAATAACAACAACAACAACAACAATATGCAT-------ATGCA--------TAAAGCACGTTAAATAAGTGTACATAAAAAGTGCTAATAAAAATAAGCCG----TGTTTT-----------TT--T----------------------------------AGTTAT---------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAATTTT--------T--TTAATGGCAGCTA--------------------------------------AATAAA-------------------------------TA-----------------------------------A----AATACGAATAAAAACAACAACAAAATAAGTACAAATTCAACA-A-----------AAATA-A------------------------ATACAAG--TTG---TATTTTAATATAGCCCAAGTGGCCCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCCTTTTTA-C---------------------------TGTG--CAACAATTTGTGTATGT-----GT--------GT-GTGGCGCCATCTAGCGGCCCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTGTA---------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCCAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTGG---------CAATTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGAATAATTGTGGCAT------------T--TTAATGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAATAAATAACATGAAAAACCCA......................................2911.00100010000000000000
droSec2
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTGTA---------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCCAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTGG---------CAATTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TA----TTTG--AGCCCTT-TGA-CC-----.............................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTT...................................................................................................................................2411.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCCAA------ATATCATGGAATGTGG---------C.....2611.0010010
dm3
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AAA-------AAAGCCAAGCAAAATTTCAGT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------TAC--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................TAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TACAAAAATGGTA-GACCATAAAA-CGT---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----G--------------------TAC--GT-----GC---------T-GTGGCGCC.......................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
.............................................................................................................................................................................................CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2181.25100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010180000
...............................................................................................TAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TG--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--GT-----GC---------T-GTGGCGCCATCTAGCGGC.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCC.........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAATGCGG---------CAATTC1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................A--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AA-CGC---CGTGCTG----------A----AA-AAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGT---------TAGAC--AAAAA-----TA----TTTG--AGC.............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TA-GACCATAAAA-CGC---CGTGCTG----------A----AA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAAATGGTA-GACCATAAAA-CGC---CGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTCAAATTATGCACAAGTGAATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--GT-----GC---------T-GTGGCGCCATCTAGCGGC.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAAAATTTCAGT---------TA...........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGGTA-GACCATAAAA-CGC---CGTGCTG----------A----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCGGCCAATAAATAACATGAA.............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCGGCCAATAAATAACATGAAAAACC........................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTT.....................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGTG----------------------------------------TGCAAATA-AAATTCAAATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-----G--------------------T.......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CAAGTGAATAATTGTGGCAT------------T--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAATAACATGAAAAACCCAA------ATA............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----------AAATAAA------------------------ATATTGCCTTTC---GTT...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAAAAATGGTA-GACCATAAAA-CGC---CGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGGCCAATAAATAACATGAAAAACC........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................G-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTT....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TAATTGTGGCAT------------T--TTAATGGCGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ATAATTGTGGCAT------------T--TTAATGGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TAGTG-----------------------------------------------------------------AA--------ACGCT---------CG--------------------------------CG----TGTGTG-----------TT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATA-AAA-------AAAGCCAAGCAAAATTTCAGT---------.............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-AAA-------AAAGCCAAGCAAAATTTCAGT---------.............................................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------.................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GCT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................G--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000
...................................................................................................................................................................................T---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000
..................................................................................................................................................................................CT---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................T---------CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................G----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................CG--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................G--------------------------------CG----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGCCCTT--GCT-----------------------------------------A-------------------------TCG-----------------------------------............................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................G----TGTGTG-----------TG--T----------------------------------GTGTG----------------------------------------TGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droEre2
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTG----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGTGCG---------TG--T----------------------------------GTGTGT--------------------------------------GCGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGACCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------AAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTCAGT---------TAGAC--AAAAA-----TA----TTTA--AGCCCTT-CGA-CCAACC-AA-T-TTT-TT-----G--------------------TAT--GT-----GC---------T-GGTGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----GC---------T-GGTGCGCCATCTAGCGGCCAAT.........................................................2717.0070000007
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------ATATTGCCTTTC---GTTTTTA...........................................................................................................................................................................................................................................................2111.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCAA------ATATCATGGAATGCGG---------CAA...2911.0011000000
.................................................................................................GTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ATATCATGGAATGCGG---------C.....1811.0011000000
..............................................................................................ATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGTGCG---------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
droYak3
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---CGTGCTA----------A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----TGTGT-------------G--T----------------------------------GTGTG----------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCGGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------A-------------------------------------------AATTGC----------TAATAAA------------------------ATATTGCCTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AAA--AACC-AAAGCAAAGCAAAGTTTCATT---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-TGA-CC-----AA-T-TTTTTT-C---G--------------------TAT--GT-----GC---------T-GTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCGG---------CAATTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................AAAA-CGC---CGTGCTA----------A----AA-AAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATGGAATGCGG---------CAAT..2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTAGCCCAGGAGGCCC.........................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC--AAAAA-----TA----TTTG--AGCCCTT-........................................................................................................................................................2211.00100000010000
..................................A--TACAAAAATGGTA-GACCATAAAA-CGC---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................TCAAATTATGCACAAGTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................AATTGTGGCAT------------T--TTAATGGCGGCCCTT--GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.....................................................................................A----AA-AATAGTG-----------------------------------------------------------------AA--------ACGGT---------CG--------------------------------CG----T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAC---C-----------------AAACG-------------------------------------------AA--------A---T---------CG--------------------------------TG----TGTGTG---------------T-----------------GTTCGTGT-TTGTGTTTGTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCTTTTC---GTTTTTAATTTAGCCCTGGAGGCCCATTAAAA-------AAAACCAAGCAAAGTTTTAGC---------TAGACCAAAAAA-----TAT-ATTCCA--AACCCTT-CGA-CC--CTAAA-T-TTTTT--C---G----TGTGT--------TCGTGCGTGTGT---GC---------A-GTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTCSizeHit CountTotal NormTotal
No Reads
droBia1
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGTG---------CG-------------------------------------------------------TGTGT----------------------------------GTGTGC---------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--GTAATGGCAGCCCTT--GCT-----------------------------------------T-------------------------ATA-----------------------------------T-------------------------------------------AAGTAC----------AAATAAA------------------------ATATTGCTGTTC---GTTTTTAATTAAGCCCAGGAGGCCTATA-AA--------AAAGCAAACCAAAGTTTTAGC---------TAGAC--AAAAA-----TA----TTTG--AGCCCTT-CGC-CC------A-T-TTTTT--C---G--------------------CGTGTGT-----------------GCTGGCGCCATCTTGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAGTG------------CAATTCSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGT---AGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGCG---------CT--------------------------------TA----TGTGTG-----------AG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCTTTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGA---------TAGAC--AAAAA-----TA----TTTG--AACCCTT-CGA-AC-----GT-T-TTTTTT-CGTCG--------------------TGT--TT---------------GTGGTGGCGCCAGCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCAG---------TAATTCSizeHit CountTotal NormTotal
No Reads
droEle1
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAG-AGC---TGTGCTA----------A----AA-AAGAGTG-----------------------------------------------------------------AA--------ACGC---------------------------------------------G---------------------TG--T----------------------------------GTGTGA---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGTCCTA--GCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGCCTATC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGC---------TAGAC--AAAAG-----TT----TTTA--AGCCCTT-CGA-CC--C--CA-TTTTT-TT-C---G--------------------TGT--GT-----GC----------GGTGGCGCCATCTAGCGGTTAATAAATAACATGAAAAACCCAA------ATATCATGGAATGTAG---------CAGTTCSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AA-AAGAGTT-----------------------------------------------------------------AA--------GCGC---------------------------------------------G---------------------TG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTACCCTTC---GTTTTTAATTTAGCCCAGGAGGCCCATA-AA--------AAAGCAAAGCAAAGTTTTAGC---------TAGAC--AAAAT-----TA----TTTG--AACCCTT-CGA-CC--------TTTTT-TT-C---G--------------------TGTGTGT-----------------GCTGGCGCCATCTAGCGCGCAATAAATAACATGAAAAACCCAA------ATATCATGGAATGCAG---------CAGTTCSizeHit CountTotal NormTotal
No Reads
droFic1
A-----------CGATATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAAA-CGC---TGTGCTA----------A----AAAAAGAGTG-----------------------------------------------------------------AA--------ACGCG-ATGGTATTTG--------------------------------TG----TGTGTGTG---------TA--T----------------------------------GTGTGT---------------------------------------GCCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCT-----------------------------------------A-------------------------ATA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------GTATGGCTTTTC---GTTTTTAATTTAGCCCTGGAGGCCCATA-AA--------AAAGCAAAGTAAAGTTTTAGC---------TAGAC--AAAAG-----TA----TTTG--AACCCTT-CGA-CC--------TTTTT-TT-C---G--------------------TGAGTGT-----GC--------GTGTTGGCGCCATCTAGCGGCCAATAAATAACATGAAAAACCCAA------ATATTATGGAATGCAG---------CAGTTCSizeHit CountTotal NormTotal
No Reads
droKik1
A-----------CAATATGGCAAATTAATTAGTTATATACAAAAATGG--------------CGT---TGTCCTA----------AAAAAAA-AAGAGTG-----------------------------------------------------------------AA-ATATCAA-C-------------G--------------------------------CGTGTGT-TATGTG---------TG--T----------------------------------GTGTGT---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTTGTGCT-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------AAATAAA------------------------ATATTGGTTTTC---GTTTTTAATATAGCCCAGGAGGCCCATA-AA--------CCAGCAAATCCAAGTTTTAGC---------TAAATCGAAAAA-----TACGATTCTC--AACCCTT-CGA-AG-----TA-T-TTTTTT-CCTCG--------------------TGCGTGT-----GG---------T-TTGGCGCCAACTAGCGACCAATAAATAAAATGAAAAATCCAA------ATATCATGGAATGCAG------CAGCAATTCSizeHit CountTotal NormTotal
No Reads
droAna3
G-----------AAACATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCATAAGA-GAG---TGGGCTAG-GGCTAACAAAA--AA-AATAG-------------------------------------------------------------------AAAATATCAAATG------GTTATTG--------------------------------TG----TGTGCG--------------------------GCGGTGTGT-CGTGTGTCGTGTGTCGGTGC---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCG-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------ATATAAA------------------------ATATTGGTTTTT---GTTTTTAATTTAGCCCACGAGGCCCATA-AA--------CAAGCAAAGCAAAGTTCTAGTCCAACAAACTAAAC--AAAAAAAAGAGGCA--CTCGGTAGCCCTT-TGAAAG-----AA-T-TTTTTT-----T----TTCGG--------TTTTGGTCGT-----TT--------GTCGTGGCGCCATCTAGCGGGCAATAAATAACATGAAAAACCTAA------ATGTCGTGGAATGCAG------CAGCAATGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGAAAAACCTAA------ATGT...........................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ATGTCGTGGAATGCAG------CAGC.....2111.001000010
droBip1
G-----------AAACATGGCAAATTAATTAGTTA--TACAAAAATGGTA-GACCGTAAGA-GAG---TGGGCTA----------A----AA-AATAGA-------------------------------------------------------------------AAATACCAAACG------GTTATTG--------------------------------TG----TGTGCGT----------TG--T--------------------------------GTCGGTGC---------------------------------------GGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCCTT--GCG-----------------------------------------A-------------------------AAA-----------------------------------T-------------------------------------------AAATAC----------ATATAAA------------------------ATATTGGTTTTT---GTTTTTAATTTAGCCCACGAGGCCCATA-AA--------CAAGCAAAGCAAAGTTTTAGCCCAGCAACCTAAAC--AAAAA----AGGCG--CTCGGTAGCCCTT-TGA-TA--C---TTTTTTT-TT-C---G--------------------TC----T---------------GTCGGGGCGCCATCTAGCGGGCAATAAATAACATGAAAAACCCAA------ATATCGTGGAATGCAG---------CAATGCSizeHit CountTotal NormTotal
No Reads
dp5
A-----------GAATATGGCAAATTAATTAGTTA--TACGAAAATGGCAGGACCATAAAAACGC---CGTGCAAATCGCTTGCAAAAAAAG-AAGAGTG-----------------------------------------------------------------AAAATATCAAATG------GCTTTTG-----------------------------------------------------------TG---T-----------------------------GTGGAT---------------------------------------TGCAAATA-AAATTCAAATTATCCACAAGTGAATAATTGTGGCAT------------T--TTAATGG---CCCTT--GCCCCCCGCACCACGCACCCCGACCTCCCCTCCAAATAAACGAAA-------------------------ATA-----------------------------------A-------------------------------------------AAT-A-----------AAATA-A------------------------ATATTGGTTTTTTTAGTTTTTAATATAGCCCAGGAGGCCCATA-AAACAAACGAAAAACAAA-TAAAATTTCG--------------------------------------------CTTTTGA---------A-T-TTTTTAAC---G--------------------T----GT-----GCTCACT---GTCGTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................A--TACGAAAATGGCAGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTCGTGGCGCCATCTAGCGGCCA...........................................................2411.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGGAATGCAG---------CAATT.1911.0010100000000
droPer2
A-----------GAATATGGCAAATTAATTAGTTA--TACGAAAATGGCAGGACCATAAAAACGC---CGTGCAAATCGCTTGCAAAAAAAG-AAGAGTG-----------------------------------------------------------------AAAATATCAAATG------GCTTTTG-----------------------------------------------------------TG---T-----------------------------GTGGAT---------------------------------------TGCAAATA-AAATTCAAATTATCCACAAGTGAATAATTGTGGCAT------------T--TTAATGG---CCCTT--GCCCCGCGCATCACGCACCCCGCCCTCCCCTCCAAATAAACGAAA-------------------------ATA-----------------------------------A-------------------------------------------AAT-A-----------AAATA-A------------------------ATATTGGTTTTTGTAGTTTTTAATATAGCCCAGGAGGCCCATA-AAACAAACTAAAAACAAA-TAAAATTTCG--------------------------------------------CTTTTGA---------A-T-TTTTTAAC---G--------------------T----GT-----GCTCACT---GTCGTGGCGCCATCTAGCGGCCAATAAATAATATGAAAAATCCAA------ATATCATGGAATGCAG---------CAATTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGCGCCATCTAGCGGCC............................................................2211.001100000
droWil2
AAACCTATATAACAATATGGCAAATTAATTAGTTA--TACAAAAATGGAC-GACCATAAAA-AAT---TGTGAAAATCAAAAAC---------------A-----------------AAAAA-------------------------------------------AA--------A---A---------TG--------------------------------TG----CAA-----AAAAATAGATA--TATATATTTTGATGGTTTAT-TTTTTGTTGGTTTTTTCTAT---------------------------------------AGCGAATA-AAATACAAATTATGCACAAGTGAATAATTGTGGCAT------------T--TTAATGGCAGCCTAA--ATA-----------------------------------AATAAATATAT-------------ATATGCATATAGACAGAAAAAGAGAGAGCGAGAGAGACAGAGTGAAAAAGT----------------------------------------ATTG------------AAAAAA------------------------ATATT-CATTTT---AATTTTAATATAGCCCAAGAGGGCCATA-AA--------AA-------CAACGTTTACAA-----------------AACA-----TAA-CAACAA--AATCCAA-CAA-CA-----AA-T--ACCGT-GTCTGTGCCTGTGTGTGTGTG----T----GAGTGTAGTGCATT---GTGGTGGCGCCATCTAGCGGCCCATAAATATTATGAAAAATCCAA------CTATCATGGAATGCAGCTTAAGCAACAATAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CTATCATGGAATGCAGCTTAAGC........2511.00100100
........................TTAATTAGTTA--TACAAAAATGGAC-GACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCTGTGTGTGTGTG----T----GAGTGTA............................................................................................2611.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGAGGGCCATA-AA--------AA-------CAACGT............................................................................................................................................................................................................2411.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGGAATGCAGCTTAAGCAACAAT..2711.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGAGTGAAAAAGT----------------------------------------ATT............................................................................................................................................................................................................................................................................................................................2111.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CAACAA--AATCCAA-CAA-CA-----AA-T--ACCG...................................................................................................................................2711.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGCATT---GTGGTGGCGCC.......................................................................2111.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CAA-CA-----AA-T--ACCGT-GTCTGTGCCTGT.....................................................................................................................2611.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CAA-CA-----AA-T--ACCGT-GTCTGTGCCTGC.....................................................................................................................2611.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAAAAGAGAGAGCGA...........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAGAGAGAGCGAGAG........................................................................................................................................................................................................................................................................................................................................................................................2020.50100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCCTGTGTGTGTGTG----........................................................................................................19100.10100100
droVir3
G-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGCA-GACCATGAAA-AAAAAGTGTGCGA----------C----AA-CA-------------------------------------------ACAACCACAAAGTTTATAATAAGAATGCA--------ACACG---------CG--------------------------------CG--------------------------------------------------------------GCGTATTAAAATTAAATTACAAAAATAAAAAAAAAAAGGAATAAACATATAAAAGTTCAAATTATGCACAAGTGAATAATTGTGGTATATTTT-------TTTATAATGGCAGCTCAC--ACT------------------------------AAATAAATAGAAACATGTTTACGTAAACTACATGCATATAT-------------------------------------GT----------------------------------------ATTT------------AAAAAAATAATAATAAAAATAAACATAATAATATAGC-TTGC---A-TTTTAATATAGCCCAAGAGGCTCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCCTT-C----------------TG-TT-T---G--------------------TGTGTGT-----GT--------GT-GTGGCGCCAAGTACGGGCGCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTT-C----------------TG-TT-T---G--------------------TGTGTGT-----............................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACGGGCGCATAAAT---..................................................1811.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAC--ACT------------------------------AAATAAATAGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-AA--------AA-------CA-AGTT--------------------------------------------GCCCTT-........................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAGC-TTGC---A-TTTTAATAT.......................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------GT-GTGGCGCCAAGTACGGG..............................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAAAAAGGAATAAACATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATAATAATATAGC-TTGC---A-TTT.............................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TT-T---G--------------------TGTGTGT-----GT--------GT-GT.............................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-AAACTCAAATTATACACCAGTGAATAATTGTGGTATTTTTTGTTGATCTTTTTAATTGTAGCGGA----------------------------------------------AAACATGTTCATTTAAATTACATGCAAAA----------------------------------------------------------------------------------ATATAAATAAATTTTAATATA------------------------ATAGAGCATTGC---A-TTTTAATATAGCCCAAGAGGCTCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCC-T-CGC-CG--------T-----G--G---G----TGTGTGTGAGTG----T----GT-----GTGTATTTGAGT-GCGGCGCCATCTAGCGGCCCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGTT--------------------------------------------GCCC-T-CGC-CG--------T-----G--G---G----T.......................................................................................................................2011.001000001
droGri2
A-----------CAATATGGCAAATTAATTAGTTA--TACAAAAATGGAA-GACCATTAAA-AAA---T-------------CCAAAAAAAA-GCGAGTGAAAATCAACAAAAAACAATAATAATAATAACAACAACAACAACAACAATATGCAT-------ATGCA--------TAAAGCACGTTAAATAAGTGTACATAAAAAGTGCTAATAAAAATAAGCCG----TGTTTT-----------TT--T----------------------------------AGTTAT---------------------------------------TGCAAATA-AAATTCAAATTATGCACAAGTGAATAATTGTGGCAATTTT--------T--TTAATGGCAGCTA--------------------------------------AATAAA-------------------------------TA-----------------------------------A----AATACGAATAAAAACAACAACAAAATAAGTACAAATTCAACA-A-----------AAATA-A------------------------ATACAAG--TTG---TATTTTAATATAGCCCAAGTGGCCCATA-AA--------AA-------CA-AGTT--------------------------------------------GCCCTTTTTA-C---------------------------TGTG--CAACAATTTGTGTATGT-----GT--------GT-GTGGCGCCATCTAGCGGCCCATAAAT---ATGAAAAATCCAAATACAAATATCATGGAATGCAG---------CAATGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAATAAGTACAAATT..................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/18/2015 at 05:01 PM