ID:

dsi_21198

 Coordinate:

3r:4373675-4373824 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.9

Flybase annnotation

exon [3r_4373506_4373674_-]; CDS [3r_4373506_4373674_-]; intron [3r_4373675_4374217_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATGGGCGCTCCCAATTTATTATTGCCATTCGCCACGTTTTAACGAATATTAAGCAACTTGGCAACCGCTCCTGAAGCATTTCCCTTTCTTAACTGATAGCCACTCCCAGCTCTTCCAACAGAGCAATGTCGGGAGACGCGGAACCAAGACCGAAAACAATCAAGACCCCAACAGTTAGTAATATAGATGGCCATTTCAGATCTAGATTGAGGAACTACCCGGGCAGACCGCAATTGCAGAAGATAAGCT
*****************************************************************************************************.....((.((((((((.(((......))).)))))).)))).*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................................................................CTAGATTGAGGAACTACCCG............................ 20 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................................................................................CAGATCTAGATTGAGGAACTACCC............................. 24 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................TAGATTGAGGAACTACCCGGGT......................... 22 1 1 1.00 1 0 0 0 0 1 0
.................................................................................................TACCCACTCCCAGCTCT........................................................................................................................................ 17 1 2 1.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................ATTTCAGATCTAGATTGAGGAAC.................................. 23 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CACTCCCAGCTCTTC...................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TGTGCCAACAGAGCAAGGTCGG..................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................AGCAATGTCGGGAGACGCGGA........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TGCCAACAGAGCAAAGTCGGG.................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................CGGTAGACGCGAAACC........................................................................................................ 16 2 14 0.50 7 0 0 0 0 0 7
..................................................................................................................................CGGTAGACGCGAAACCA....................................................................................................... 17 2 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................................ATGTAGATTGTGGAACTA................................ 18 2 4 0.25 1 0 0 0 0 0 1
.................................................TTAAGGAACTTGGCAA......................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 1 0 0
........................................................................................................................AGAGCAGTGTCGTGAGACA............................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................................................ATGTAGATTGTGGAACT................................. 17 2 17 0.06 1 0 0 0 0 0 1
..........................................................................................................................AGCAAGGTCGTGAGAC................................................................................................................ 16 2 19 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................TGTAGATTGTGGAACTA................................ 17 2 20 0.05 1 0 0 0 0 0 1
..........................................................................................................................................GCGGAACCAATACAGA................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ATACCCGCGAGGGTTAAATAATAACGGTAAGCGGTGCAAAATTGCTTATAATTCGTTGAACCGTTGGCGAGGACTTCGTAAAGGGAAAGAATTGACTATCGGTGAGGGTCGAGAAGGTTGTCTCGTTACAGCCCTCTGCGCCTTGGTTCTGGCTTTTGTTAGTTCTGGGGTTGTCAATCATTATATCTACCGGTAAAGTCTAGATCTAACTCCTTGATGGGCCCGTCTGGCGTTAACGTCTTCTATTCGA
***********************************************************************************************************.....((.((((((((.(((......))).)))))).)))).***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
........GAGGGTTAAATGATA................................................................................................................................................................................................................................... 15 1 8 1.38 11 6 0 0 1 0 3 0 0 1
...................................................................................................................................................TCTGGCTTTTGTTAGTTCTGG.................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CTGCGCCTTGGTTCGGGCTG............................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................GGTTGTCTCGATAGAGCCC.................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTCTGGGGTTGTCGTTCATTAT.................................................................. 22 2 8 0.50 4 0 0 0 0 0 0 4 0 0
.................................................................................................................................................................................................................CTCCTTGCTGGGCCGGTC....................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................TCCTGGATGGGCCCG......................... 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0
........................................................................................................AGGGTCGAGATGGTTGACT............................................................................................................................... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
......................................................................................................TCAGGGTCGAGATGGTTG.................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0
...................................................................................................................GGTTGACTCGTTCCAGCC..................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................CCCCTGGATGGGCCCG......................... 16 2 9 0.11 1 0 0 0 0 1 0 0 0 0
........................................................................................................AGGGTCGAGATGGTTGACTCGAT........................................................................................................................... 23 3 11 0.09 1 0 0 0 1 0 0 0 0 0
......GGGAGGGTTAAATGATA................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................TGGCTAGTGTTAGTTCTGA.................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0
..........................................................................................................GGTCGATAAGGTTGT................................................................................................................................. 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGGCCCGGCTGGCG.................. 15 1 17 0.06 1 0 0 0 0 1 0 0 0 0
...........GAGTAAATAAGAACGGTAAG........................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.......GGAGGGTTAAATAAT.................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................CTGGGGTTGCCGATCA...................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................ATGGGCCCGGCTGACG.................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................................................CGAGAAGGTTGACTCGATTC......................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................................................AGAGAATGTTGTCTCG............................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................AGAAGGTTGACTCGATAC......................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 04:47 AM