ID:

dsi_21169

 Coordinate:

3r:22424568-22424717 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -5.0 -4.9

Flybase annnotation

CDS [3r_22424718_22424737_+]; three_prime_UTR [3r_22424738_22425173_+]; exon [3r_22424718_22425173_+]; intron [3r_22423875_22424717_+]

Repeatable elements

NameClassFamilyStrand
(CTA)nSimple_repeatSimple_repeat+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCCCGCATTATCAGTGTACCCCAGCTTCCGATATGATCTGCTCTGTCTACTACTACTACTACTACTAACTCTGACGGCGGCATCAAGCGAGCTCTGAAGCTATACTTATTTATCAAATTCACGCTTAATCACAACCCACCCGAAATTCGACAATTGATTGATTTATCTATTGCTATATGCTCCTTTCGTTCACACACAGAGAGCGAGGAAGTAATGTAAATTATCGAACCCCCTACAAACCGACCGCCT
**********************************************************************************...(((((((((....))))....................))))).((((.........(((...))).........))))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
..................................................................................ATCAAGCGAGCTCTGAAGCT.................................................................................................................................................... 20 0 1 10.00 10 8 1 1 0 0 0 0 0 0 0 0 0
...............................................................................GGCATCAAGCGAGCTCTGAAGCT.................................................................................................................................................... 23 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0
.........................................................TACTACTACTAACTCTGACGGCGGCA....................................................................................................................................................................... 26 0 1 6.00 6 0 0 0 2 0 0 4 0 0 0 0 0
.........................................................TACTACTACTAACTCTGACGGCGG......................................................................................................................................................................... 24 0 1 5.00 5 0 0 0 1 2 2 0 0 0 0 0 0
.........................................................TACTACTACTAACTCTGACGGCGGC........................................................................................................................................................................ 25 0 1 4.00 4 0 0 0 3 1 0 0 0 0 0 0 0
...............................................................................GGCATCAAGCGAGCTCTGAAG...................................................................................................................................................... 21 0 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0
............................CCGATATGATCTGCTCTGT........................................................................................................................................................................................................... 19 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCCTTTCGTTCACACACAGAGAGCGAGG......................................... 28 0 1 3.00 3 0 0 0 0 2 1 0 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGGCA....................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 1 0 0 2 0 0 0 0 0
...............................................................TACTAACTCTGACGGCGGCATCAAG.................................................................................................................................................................. 25 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0 0
................................................................................GCATCAAGCGAGCTCTGAAGCT.................................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCAAGCGAGCTCTGAAGCTATACTT.............................................................................................................................................. 25 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0
.............................................................................................TCTGAAGCTATACTTATTTATCAAAT................................................................................................................................... 26 0 1 3.00 3 0 0 0 1 1 0 0 0 0 1 0 0
....................................................................................CAAGCGAGCTCTGAAGCT.................................................................................................................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TCAAGCGAGCTCTGAAGCTATACT............................................................................................................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................CTACTACTACTACTAACTCTGACGGC........................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCTGAAGCTATACTTATTTATCAAA.................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.................................ATGATCTGCTCTGTCTACTACT................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CACACACAGAGAGCGAGGA........................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................AAGCGAGCTCTGAAGCTATACTTA............................................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................TACTACTACTACTACTAACTCTGACGGC........................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
...............................ATATGATCTGCTCTGTCT......................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ATCAAGCGAGCTCTGAAGCTATACTT.............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................ACTACTACTACTACTAACTCTGACGGC........................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................TGACGGCGGCATCAAGCGAGCTCTGA........................................................................................................................................................ 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.......................AGCTTCCGATATGATCTGCTCTGTC.......................................................................................................................................................................................................... 25 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
..................................................................................ATCAAGCGAGCTCTGAAG...................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACTAACTCTGACGGCGGCATCAAGC................................................................................................................................................................. 26 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................ATTCGACAATTGATTGAT....................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................ACTACTAACTCTGACGGCGG......................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................ACTACTAACTCTGACGGCGGCATCAAGC................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TACTACTACTAACTCTGACGGCG.......................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................ACTACTACTAACTCTGAC.............................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................CTAACTCTGACGGCGGCATCAAGCGAGC............................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................ACACAGAGAGCGAGGAAG...................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TACTACTATTAACTCTGACGGCGGC........................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................ACTAACTCTGACGGCGGCATCAAGC................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCTGAAGCTATACTTATTTATCAAATT.................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................CGATATGATCTGCTCTGT........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTATAGAGCGAGGAAGTAATGTAAATTA.......................... 28 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................CATCAAGCGAGCTCTGAAGCTATACT............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACTACTACTAACTCTGACGGC........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTCGTTCACACACAGAGAGCGAGG......................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................TACCCCAGCTTCCGATATGATCTGC................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................CACACACAGAGAGCGAGGAA....................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATTGCTATATGCTCCTTTCGTTC.......................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GGCGGCATCAAGCGAGCTCTGAAGCTAT.................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................ATCAAGCGAGCTCTGAAGCTATACTTATT........................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................ACTAACTCTGACGGCGGCA....................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TACTACTACTACTACTAACTCTGACGG............................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGA......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................GCATCAAGCGATCTCTGAAGCT.................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATCGAACCCCCTACAAACC........ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGGCATT..................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGGCAA...................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................ATGTAAATTATCGAACCCCCTACAAACC........ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TAACTCTGACGGCGGCATCAAGCGAG.............................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................CAAGCGAGCTCTGAAGCTATACT............................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CATCAAGCGAGCTCTGAAGC..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................GGCGGCATCAAGCGAGCTCT.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTGCTATATGCTCCTTTCGTTCACAC...................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................CTACTAACTCTGACGGTGG......................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................CGATATGATCTGCTCTGG........................................................................................................................................................................................................... 18 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACGCTTAATCACAACCCACCCGAAATTC..................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TACTAACTCTGACGGCGGCATCAAGCGAGC............................................................................................................................................................. 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................CTACTACTACTAACTCTGACGGC........................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGCTATATGCTCCTTTCGTT........................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................AAGCGAGCTCTGAAGCTATACTTATT........................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................TATGATCTGCTCTGTCTACTACTAC................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................ACTACTACTAACTCTGACGGCGAC........................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................TTCCGATATGATCTGCTCTGT........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CATCAAGCGAGCTCTGAAG...................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................ACTAACTCTGACGGCGGCAT...................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................CTACTACTAACTCTGACGGC........................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................ACTAACTCTGACGGCGGCATCAAG.................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................AACTCTGACGGCGGCATC..................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ATCAAGCGAGCTCTGAAGCTATAC................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................CAGCTTCCGATATGATCTGCTCTGTC.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................TCTGACGGCGGCATCAAGCGAGCTC........................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................GAACCCCCTACAAACCGACCGCCT 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TCAAGCGAGCTCTGAAGCTATAC................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................TCCGATATGATCTGCTCTGT........................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTGAAGCTATACTTATTT.......................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TACTAACTCTGACGGCGGCATCAAGCGAA.............................................................................................................................................................. 29 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGGCAT...................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................GGCATCAAGCGAGCTCTGA........................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCCTTTCGTTCACACACAGAGAGCGA........................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GAGGAAGTAATGTAAATTATC........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TACTACTAACTCTGACGGC........................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACTAACTCTGACGGCGGC........................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TACTACTACTACTAACTCTGACGGCGGCA....................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................TACTACTAACTCTGACGGCGGCATCAAGC................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................TCCGATATGATCTGCTCTG............................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................GTCTACTACTACTACTACTACTAACT................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGCATCAAGCGAGCTCTGAAGC..................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGCGAGCTCTGAAGCTATACTT.............................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................ATATGATCTGCTCTGTCTACTACTACT................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................AACTCTGACGGCGGCATCAAGCGA............................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................GATATGATCTGCTCTGTC.......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TAACTCTGACTGCGGCATCAAGCGAGC............................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................CACACACAGAGAGCGAGGAAGTAATGT................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CACACACCGAGAGCGAGGAAGTAATGT................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGAGAGCGAGGAAGTAATGTAAATT........................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................CAGCTTCCGATATGATCT.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................CTGTCTACTACTACTACTAC........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TAATGTAAATTATCGAACCCCCTA.............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................CTGCTCTGTCTACTACTACTACT............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TACTACTACTACTAACTCTGACGGCGGC........................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TGCTATATGCTCCTTTCG............................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................CTCTCACGGCGGCAACAGG.................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................TACTACTACTACTACTACT....................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGGGCGTAATAGTCACATGGGGTCGAAGGCTATACTAGACGAGACAGATGATGATGATGATGATGATTGAGACTGCCGCCGTAGTTCGCTCGAGACTTCGATATGAATAAATAGTTTAAGTGCGAATTAGTGTTGGGTGGGCTTTAAGCTGTTAACTAACTAAATAGATAACGATATACGAGGAAAGCAAGTGTGTGTCTCTCGCTCCTTCATTACATTTAATAGCTTGGGGGATGTTTGGCTGGCGGA
***************************************************************************************...(((((((((....))))....................))))).((((.........(((...))).........))))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
............................................................................................................................................GGGTTTAAGCTGCTAGCTAA.......................................................................................... 20 3 8 5.88 47 29 14 0 1 0 0 0 0 2 1 0
...........................................................................................................................................GGGGTTTAAGCTGCTAGCTAA.......................................................................................... 21 3 4 2.50 10 8 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................GGGGTTTAAGCTGCTAGCTA........................................................................................... 20 3 10 1.90 19 15 4 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCTCTCGCTCCTTC...................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAATGTTTGTCTTTCGCTCCTTCAT.................................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................GGGGTTTAAGCTGTTAGCTA........................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AGGTACGAAGTAGTGTTGGGT............................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................AGATGATGATGATGATGATGA....................................................................................................................................................................................... 21 0 5 0.60 3 0 0 1 0 0 0 2 0 0 0 0
...........................................................................................................................................TGGCTTTAAGCTGCTAGCTAA.......................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GATGTGTGGCTGGCGG. 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.............................................CAGATGATGATGATGATGA.......................................................................................................................................................................................... 19 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................TGGGTTTAAGCTGTTAGCTA........................................................................................... 20 3 10 0.30 3 0 1 0 2 0 0 0 0 0 0 0
......................................................................................................................AAGTGGGGATTAGTGTTGAGT............................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................GGGGTTTAAGCTGCTATCTAA.......................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGGGTTTAAGCTGCTAACTAA.......................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAGTGGGGATTAGTGTTG.................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................AGTGTTGGGTGGGTTT......................................................................................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................GGTTTAAGCTGCTAACTA........................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..................TCGGGTCGAAGGCTA......................................................................................................................................................................................................................... 15 1 13 0.15 2 0 0 2 0 0 0 0 0 0 0 0
................CATTGGGTCGAAGGCCA......................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................GGGAAAGCAAGTTTGTGT................................................... 18 2 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................AGCAAGTGCGTGTCCCT............................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
...............CCATGGGGTCTAAGGCT.......................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
..............................................AGATGATGATGATGATGA.......................................................................................................................................................................................... 18 0 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22424518-22424767 + dsi_21169 ATC---CCGCATT-------ATCAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTACTACTACT---------ACTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------CCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCT
droSec2 scaffold_13:1737674-1737920 + ATC---CCGCATT-------ATCAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------TACT--ACTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------CCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCT
dm3 chr3R:22982672-22982918 + ATC---CCGCATT-------ATAAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-GTGTCTAC----------TA-----CTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------TCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGATT---------ACCCCCCT---------------------------ACAA-------------------------ACCGACCGCCT
droEre2 scaffold_4820:5054530-5054778 - ATC---CTGCATT-------CTCAGTGTGC----CCCAGCTTTCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T----------CAA---------AATCTTATA-TA----TCA-AAATCAC-GCTTA-----AT----C-----------ACCCA--------------CCCT-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCCCACACAG--AGAGCGAGAGCGAGGAAGTAATGTAAATTATCGTAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCT
droYak3 3R:23511675-23511913 - ATC---CTGCATT-------CTCAGTGTAA----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------ATTATT-TA----TCA-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAA---------CCC--CCT---------------------------ACAA-------------------------ACCGACCGCCT
droEug1 scf7180000409770:447000-447246 + CTC---CTGCATT-------ATCTGTGCATC--CCCCAGCTTCCAG-----T----------TTGA-CC---------TCCT-CTGTCTAA----------TA-----CTAATACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTATA-GCTA-----------------AATA---------TTTATA-TA----TCAAAATTCAC-GCTTA-----TT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACACACAG--AGA------GCGAGGAACTTATGTAAATTATCGAAC---------CCC--CCT---------------------------ACAA-------------------------ACCGACCGCCT
droBia1 scf7180000302113:3255372-3255628 + CTC--CCTGCATT-------CTCTGTGCATT--CCCCAGCTTCCCA-----A----------CTGA-TC---------TGCT-CTGTCTAA----------------ACTACTAATAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTATAAA---------T----AC---TTAACTATTTACCGAAT--CA-AAA----TCA-AATTCAC-GCTTT-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--CTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACACACAG--AGA------GCGAGGAACTCATGTAAATTATCGAAC---------CCC--CCA-------------------------CTGCAA-------------------------ACCGACCGCCT
droTak1 scf7180000410579:285718-285975 - TTCTCCCTGCATT-------CTCTGTGCATTTTCCCCAGCTTCCCA-----A---------ACTGA-TC---------TGCT-CTGTCTAC-----------------CTACTACTAACTTCTGACGGCGGCA-TC-AAGCGAG-CTCTAAAAGTTT--TAT---------------A---------CTTATTATA----CCA-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGTTC--CTTTCGTTTGACAAACAG--AGA------GCGAGGAACTTATGTAAATTATCGAAC---------CCCC-CCA---------------------------ACAA----------------------ACCTACGACCGCCT
droEle1 scf7180000491280:1029340-1029581 + CTC---CTGCATT-------CTCTGTGCAT----CCCAGCTTTCTACTTGATCTGATCTGAATTGA-TA---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTAC-----------------------------------------C-TA----CAA-CATTCAC-GCTTT-----AT----C-----------ACCAA--------------CCCA-AAATTC-GACAATTAATTTA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACATACAG--AGA------GAGAAGAACATATGTAAATTATTGAAC---------CCC--CCA---------------------------ACCA-------------------------ACCGACCGCCT
droRho1 scf7180000779261:75717-75951 - CTC---CTGCATT-------CTCTGTGCAT----CCCAGCTTCCGA-----T----------CTGA-TA---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCCGACGGCGGCA-TC-AAGCGAG-CTCTAAA-GCTACATAT----------------------------ACC-TA-----GA-AATTCAC-GCTTT-----TT----C-----------ACAAA--------------CCCG-AAATTC-GACAATTAATTTA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACATACAG--AGA------GCGAAGAACTTATGTAAATTATTGAAC---------CC-----A---------------------------ACCA-------------------------ACCGACCGCCT
droFic1 scf7180000453776:157689-157931 + TCC---CTGCATT-------CTCTGTGCAT----CCCAGCTTCCGA-----T----------CTGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAG-GCTA----T---------------A---------TATATA-TACCTACCC-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--CTTATCTAT-----TGCAATATGTTC--CTTTCGT-TGACATACAG--AGA------ATGAAGAAATTATGTAAATTATCGATT---------TCC--CCA---------------------------ACCA-------------------------ACCGACCGCCT
droKik1 scf7180000302810:427152-427376 - ATC---CTGCAT----------------------CCTGGCTTTTGA-----T----------ATGAACC---------TGCT-C---CTAC---GCCC-TAA--------ACTACTAAC-TCTGGCGGCGGCA-TC-AA-CGAG-CTATAAA-A-----------------------------------------------AA-AAATCACTGCTTAAACTCACTCCTC-----------ACCCC----C---------CAAGAAAATTC-GACAATTGATTGA--TTTATCTAT------GCCATGTTTCCCTCTTTCGT-TGCCATACAG--AGA---AAAAAGAAGAAATTATGTAAATTAGCCAAC---------CCC--------------------------------------------------------------CCGACCGCAG
droAna3 scaffold_12911:3900800-3901076 + -TC---TAGCGTT-------C--TGTGCAT----CCTAGCTTTTGA-----T----------CTGA-TC---------TGCTAATGTCTAC----------TA-------GCTACTAAC-TATGACGGCGGCA-TC-AAGCGAG-CTATAAA-TCTA----T----------AAA---------GAAC--AT-AGA----TGA-AATTCACTGCTTA-----ATTT--C-----------ACCCGCT------------TCCA-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCCCACAG--AAAAAGAAAAAGAAGAAATTATGTAAATTAGCCAACTACTAGTCATCCC--GAACCAACCAACCAACCA-----------ACCG-------------------------ACCAACCGCCT
droBip1 scf7180000396640:746048-746297 + -TC---TAGCATT-------C--TGTGCAT----CCTAGCTTTTGA-----T----------CTGA-TC---------TGCTAATGTCTAC----------TA-------CTTACTAAC-TATGACGGCGGCA-TC-AAGCGAG-CTACAAA-TCTA----T----------TAA---------GAAC--AT-AGA----TGA-AATTCACTGCTTA-----ATTT--C-----------ACCCACT------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------AAGAAGAAATTATGTAAATTAGCCAAC---------CCC--CGAA------------CCA-----------ACCA-------------------------ACCGACCGCCT
dp5 2:8590504-8590814 + dps_431 TCT---CGGC-TTACGCTTGCCCTTTGAAT----------------------------------GT-CCCGCTCTCCC---T-CT------TTCTCTTG----CTGATCTGTTACTAAC-TCTGAAGGCGGCA-TC-AAGCGAA-C-----A-GCTACTTATATATATATATCAAATA---------T--TT-ATA----TCA-AAACCACTGCTTA-----CT----CATAACAATCTCACCCACAACT--AAT-AACTGAG-AGATTC-GACAATTGTTTGA--TTGATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------GCGAAGAGATTCTATAAATTAGAAAACCA-----AACCCC--CAAGCAAGCAATCAACCAACCAACCCACTACCA-----------------------A-CACGACCGCCT
droPer2 scaffold_0:2417860-2418170 + TCT---CGGC-TTACGCTTGCCCTTTGAAT----------------------------------GT-CCCGCTCTCCC---T-CT------TTCTCTTG----CTGATCTGTTACTAAC-TCTGAAGGCGGCA-TC-AAGCGAA-C-----A-GCTACTTATATATATATATCAAATA---------T--TT-ATA----TCA-AAACCACTGCTTA-----CT----CATAACAATCTCACCCACAACT--AAT-AACTGAG-AGATTC-GACAATTGTTTGA--TTGATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------GCGAAGAGATTCTATAAATTAGACAACCA-----AACCCC--CAAGCAAGCAATCAACCAACCAACCCACTACCA-----------------------A-CACGACCGCCT
droWil2 scf2_1100000004902:5379943-5380207 + ACT---ACATACT-------ACTACTAT-T----CTTAGTTATTTT-----T----------ATCT-TT---------TGCT------TCA----------AA-------CTAACTAAT-TCTGAAGGCGGCGATCTAGACGAGGCTAAGAA-ACAA----A--------------------------------CA----AAA-AATCCAA-A---------------T-----------ATTAA--------------CATG-AAATCCAAACAATTGATATA--TATATATATTTTTTTGCTA--TGTTT--CTTTCGT-TGCCATCTATAGAAAATCAAGAAGAAGAAATTATATAGTTTCTTCAAATA-------TCCCCCCT---------------------------GCAACCCCACAAAAACAAAAAAAAAAACAATCGACCATCT
droVir3 scaffold_13047:13691831-13692036 - CTC---TCTCTTT-------AAC-----------TCTTGCTTTTCCC----A----------TTGA--C---------TG------------------------------CTTACTAAT-TTCAAAAGCGGCA-CT-CAATGAA-A-----A-CCTA----T--------------------------------------------------GCTTC-----TTTTCTC-----------AA---CTT-TAAAGC-AAATGAA-AAATTC-AAACATTGATTGATATTGATCTAT-----TGCTAT--TTCC--CTTTCGT-TGACATATAG--AAA------GCGAAGATATCTTATAAATAATCCAAC---------CT---------------------------------CCAC-------------------------ACCGACCGCAT
droMoj3 scaffold_6540:10920515-10920718 - ATC---TCTCTTT-------AACCCTCT-C----TTTACTGCTTT----------------------------------------------------------TTAATGTATTTTTACT-TATAAAAGCGGCA-CG-AAGCGCG-TTACGAA-AATC----------------------------------------------------TCTGCTTT-----AT----C-----------AA---TTT-TAT-------ATAA-AAAGTG-CAACATTGATTGATATTGATCTAT-----TGCTCT--TTCC--CTTTCGT-TGAAATATAG--AAA------ACGAAGAAATCTTATAAATTACCCAAC---------CC-----------------------------------AC-------------------------ACCGACCGCAT
droGri2 scaffold_14830:6259707-6259882 + ATCTC-TTGCTTT-------AACTTTCT-T----TCTATCTCTTC-----------------------------------------------------------------ATAACTAAC-------CT-------------------------------------------------------------------------------------CTTT-----ATTT--C-----------TCCAACTT-TAAAGCAAAATGAA-CATTTC-AAGAATTGATTGATATTGATCTAT-----TGCTAT--TTTC--ATCTCCT-TGATATACAG--AAA------ACGAAGATATCATGTAAATTACCCAAA---------CC-----------------------------------AC-------------------------ACCGACCGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATC---CCGCATT-------ATCAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTACTACTACT---------ACTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------CCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................20110.001008110000000000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2317.00707000000000000000
.................................................................................................T---------ACTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2616.00600000020000040000
.................................................................................................T---------ACTACTACTAAC-TCTGACGGCGG...................................................................................................................................................................................................................................................................................................................................2415.00500000012002000000
.................................................................................................T---------ACTACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2514.00400000031000000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-G............................................................................................................................................................................................................................................................................................................2114.00401210000000000000
..........................................CCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................1914.00402200000000000000
......................................................................................................................................................................................................................................................................................................................TC--CTTTCGT-TCACACACAG--AGA------GCGAGG.........................................................................................................2813.00300000002001000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2313.00300000010000020000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAG..........................................................................................................................................................................................................................................................................................................................2513.00300000012000000000
..................................................................................................................................GCA-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2213.00303000000000000000
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTT........................................................................................................................................................................................................................................................................2513.00300000000003000000
..................................................................................................................................................TCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AAT.......................................................................................................................................................................................................................................................2613.00300000011010000000
.......................................................................................................................................C-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................1812.00201100000000000000
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................2412.00200110000000000000
.............................................................................................CTACT---------ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2612.00201010000000000000
..................................................................................................................................................TCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AA........................................................................................................................................................................................................................................................2512.00200000000200000000
..............................................................ATGA-TC---------TGCT-CTGTCTACTACT.......................................................................................................................................................................................................................................................................................................................................................................2212.00202000000000000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGA........................................................................................................1912.00200020000000000000
.........................................................................................................................................AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTA.......................................................................................................................................................................................................................................................................2412.00200200000000000000
...........................................................................................TACTACT---------ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2812.00200000011000000000
.............................................A-----T----------ATGA-TC---------TGCT-CTGTCT.............................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTT........................................................................................................................................................................................................................................................................2612.00202000000000000000
............................................................................................ACTACT---------ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2712.00201010000000000000
..........................................................................................................................TGACGGCGGCA-TC-AAGCGAG-CTCTGA...............................................................................................................................................................................................................................................................................................................2612.00200000020000000000
.....................................AGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTC..............................................................................................................................................................................................................................................................................................................................................................................2512.00200010010000000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-G............................................................................................................................................................................................................................................................................................................1812.00202000000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2612.00200100001000000000
..........................................................................................................................................................................................................................................................................ATTC-GACAATTGATTGA--T.......................................................................................................................................................................1812.00200020000000000000
..............................................................................................................ACTACTAAC-TCTGACGGCGG...................................................................................................................................................................................................................................................................................................................................2012.00201000000001000000
..............................................................................................................ACTACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
.................................................................................................T---------ACTACTACTAAC-TCTGACGGCG....................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...........................................................................................................ACTACTACTAAC-TCTGAC........................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................CTAAC-TCTGACGGCGGCA-TC-AAGCGAG-C....................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGA------GCGAGGAAG......................................................................................................1811.00101000000000000000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..................................................................................................................................................TCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATT......................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................CGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................................................................................................................................CA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................2611.00101000000000000000
...........................................................................................................ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................TTTCGT-TCACACACAG--AGA------GCGAGG.........................................................................................................2511.00100000000001000000
...........................TAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGC.....................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAA.......................................................................................................2011.00100010000000000000
....................................................................................................................................................................................................................................................................................................TAT-----TGCTATATGCTC--CTTTCGT-TC..................................................................................................................................2411.00100100000000000000
..............................................................................................................................GGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------.....................................................................................................................................................................................................................................................................................2811.00100000010000000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-....................................................................................................................................................................................................................................................................2911.00101000000000000000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...........................................................................................TACTACT---------ACTACTACTAAC-TCTGACGG......................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGA...................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................TATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACC........2011.00100010000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-TT-.............................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-A...............................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................ATGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACC........2811.00100010000000000000
...................................................................................................................TAAC-TCTGACGGCGGCA-TC-AAGCGAG-.....................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................C-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................2311.00101000000000000000
...................................................................................................................................CA-TC-AAGCGAG-CTCTGAA-GC...........................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................................................................GGCGGCA-TC-AAGCGAG-CTCT.................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-TCACAC..............................................................................................................................2711.00100100000000000000
...........................................CGA-----T----------ATGA-TC---------TGCT-CTGG...............................................................................................................................................................................................................................................................................................................................................................................1821.00202000000000000000
.................................................................................................................................................................................................................AC-GCTTA-----AT----CACAA--------CCCA--------------CCCG-AAATTC-.......................................................................................................................................................................................2811.00100010000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-C....................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
................................................................................................CT---------ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
............................................................................................................................................................................................................................................................................................................TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2011.00100010000000000000
.........................................................................................................................................AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-....................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................T----------ATGA-TC---------TGCT-CTGTCTACTACTAC.....................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
........................................TTCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................CA-TC-AAGCGAG-CTCTGAA-G............................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................CTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-TC-AAG..........................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
....................................................................................................................AAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------C..........................................................................................................................................................................................................................................................................2411.00101000000000000000
....................................CAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTC..............................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................................................................................................................TCTGACGGCGGCA-TC-AAGCGAG-CTC..................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................GAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCT2411.00100010000000000000
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------C..........................................................................................................................................................................................................................................................................2311.00100000010000000000
.........................................TCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...................................................................................................................................................CTGAA-GCTA----T---------------A---------CTTATT-T...................................................................................................................................................................................................................................................................1811.00100010000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAGCGAA-.....................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGA...............................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................................TC--CTTTCGT-TCACACACAG--AGA------GCGA...........................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................GAGGAAGTAATGTAAATTATC........................................................................................2111.00101000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
................................................................................................................TACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............................................................................................TACT---------ACTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.........................................TCCGA-----T----------ATGA-TC---------TGCT-CTG................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.....................................................................................GTCTACTACTACT---------ACTACTACTAAC-T.............................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GC...........................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................AGCGAG-CTCTGAA-GCTA----T---------------A---------CTT........................................................................................................................................................................................................................................................................2211.00100100000000000000
.............................................A-----T----------ATGA-TC---------TGCT-CTGTCTACTACTACT---------...........................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
....................................................................................................................AAC-TCTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
............................................GA-----T----------ATGA-TC---------TGCT-CTGTC..............................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGTAATGT................................................................................................2711.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................CAG--AGA------GCGAGGAAGTAATGTAAATT...........................................................................................2611.00100000000000010000
....................................CAGCTTCCGA-----T----------ATGA-TC---------T.......................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
...................................................................................CTGTCTACTACTACT---------ACTAC......................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................TAATGTAAATTATCGAAC---------CCC---CT---------------------------A.......................................2411.00100010000000000000
....................................................................C---------TGCT-CTGTCTACTACTACT---------ACT........................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..............................................................................................TACT---------ACTACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
............................................................................................................................................................................................................................................................................................................TGCTATATGCTC--CTTTCG......................................................................................................................................1811.00100010000000000000
........................................................................................TACTACTACT---------ACTACTACT..................................................................................................................................................................................................................................................................................................................................................19200.05100010000000000000
droSec2
ATC---CCGCATT-------ATCAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------TACT--ACTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------CCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAA.......................................................................................................20110.00100811
.............................................................................................................................................................................................................................................................................................................GCTATATGCTC--CTTTCGT-T...................................................................................................................................1913.0031020
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2213.0030210
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGA........................................................................................................1913.0030210
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2713.0031110
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGAA.......................................................................................................2112.0020200
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2312.0020110
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2612.0021100
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2012.0020101
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2412.0020200
........................................................................................................T--ACTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2211.0011000
.........................................................................................................................................................GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTT..............................................................................................................................................................................................................................................2811.0010100
........................................................................................................................TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----..................................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGA........................................................................................................2011.0010100
..............................................................................TGCT-CTGTCTAC----------TACT--ACTACTACTAAC-..............................................................................................................................................................................................................................................................................................................................................2811.0011000
..............................................................................................................................................................................................................................................................................................................................................AGA------GCGAGGAAGTAATGTAA..............................................................................................2011.0010100
............................................................................................................................................................A----T---------------A---------CTTATT-TA----TCA-AATTCAC-G.................................................................................................................................................................................................................................................2211.0011000
.........................................TCCGA-----T----------ATGA-TC---------TGCT-CTGC...............................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................CTAC----------TACT--ACTACTACTAAC-TCT...........................................................................................................................................................................................................................................................................................................................................2311.0011000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-TC-AAG..........................................................................................................................................................................................................................................................................................................................2411.0010100
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2311.0010100
........................................TTCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................C--CTTTCGT-TCACACACAG--AGA------GC.............................................................................................................2311.0010010
....................................................................................................................................................................................................................................................................................................................................ACACACAG--AGA------GCGAGGAA.......................................................................................................1911.0011000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGAAGT.....................................................................................................2311.0010100
........................................................................................................................................................................................................................A-----AT----CACAA--------CCCA--------------CCCG-AAATTC-G......................................................................................................................................................................................2311.0011000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGG.........................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................ATCGAAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGC..2511.0011000
..............................................................................................................ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................CAC-GCTTA-----AT----CACAA--------CCCA--------------CCC................................................................................................................................................................................................2211.0011000
....................................................................................................................................................................................................................................................................................................TAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGG.........................................................................................................1911.0011000
...............................................................................................................................................................................................................................................................................................................................................................................AAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCT2311.0011000
....................................................................................................................AAC-TCTGACGGCGGCA-TC-AAG..........................................................................................................................................................................................................................................................................................................................2111.0011000
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2111.0011000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................TGCTATATGCTC--CTTTCGT-TC..................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................CACAA--------CCCA--------------CCCG-AAATTC-GACA...................................................................................................................................................................................2311.0010010
................................................................................................................................CGGCA-TC-AAGCGAG-CTCTGAA-GC...........................................................................................................................................................................................................................................................................................................2311.0010100
..................................................................................................................................................................................................................................................................................................TCTAT-----TGCTATATGCTC--CTTTC.......................................................................................................................................2211.0011000
............................................................................................................CTACTACTAAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2611.0011000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAG......................................................................................................2111.0010001
.............................................................................................................................................GAG-CTCTGAA-GCTA----T---------------A---------CTTAT......................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................ACACACAG--AGA------GCGAGGA........................................................................................................1811.0011000
........................................................................................................T--ACTACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2511.0011000
......................................................................................................................C-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGA...............................................................................................................................................................................................................................................................................................................2911.0010100
..........................................................................................C----------TACT--ACTACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2911.0010100
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCTA----.....................................................................................................................................................................................................................................................................................................2411.0011000
.....................................................................................................................................................GAA-GCTA----T---------------A---------CTTATT-TA----TCA-AA........................................................................................................................................................................................................................................................2211.0011000
...................................................................................................................................................................................................................................................................................................................................................................TGTAAATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------AC.........2611.0011000
...............................................................................................................................GCGGCA-TC-AAGCGAG-CTCTGAA-.............................................................................................................................................................................................................................................................................................................2211.0010010
.........................................................................................................................CTGACGGCGGCA-TC-AAGCGAG-CTC..................................................................................................................................................................................................................................................................................................................2411.0010100
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................CCCA--------------CCCG-AAATTC-GACAATTGAT.............................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................................GCTATATGCTC--CTTTCGT-TCACACACAG--A.......................................................................................................................2911.0011000
..........................................................................................................................................................................................................................................................................................................................CTTTCGT-TCACACACAG--AGA------...............................................................................................................2011.0010100
.....................................................................................................................................................................................................................................................................................................................................CACACAG--AGA------GCGAGGAA.......................................................................................................1811.0010001
.......................................................................................................................................................................................................................................................................................................................................CACAG--AGA------GCGAGGAAGTAA...................................................................................................2011.0010100
............................................................................................................CTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................AAC-TCTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2411.0010100
.........CATT-------ATCAGTGTAC----CCCAGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
........................................................................................................................................................................................................................................................................................................................................................................ATTATCGAAC---------CCC---CT---------------------------ACAA-------------------------AC.........2111.0011000
................................................................GA-TC---------TGCT-CTGTCTAC----------TACT--ACTACTACT..................................................................................................................................................................................................................................................................................................................................................2911.0011000
ATC---CCGCATT-------ATCAGTGTAC----CCC.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGA------GCGAGGAAGTAAT..................................................................................................2211.0010100
dm3
ATC---CCGCATT-------ATAAGTGTAC----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-GTGTCTAC----------TA-----CTACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTATT-TA----TCA-AATTCAC-GCTTA-----AT----CACAA--------TCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGATT---------ACCCCCCT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................241101.00101000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000120807600000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................25153.005300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090004300000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................23142.004200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010103900000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGG......................................................................................................................................................................................................................................................................................................................................18137.003700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021412900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCTAC----------TA-----CTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................27132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000070001600000000000000010100320000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................ACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................22126.002600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TA-----CTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................26123.002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211600000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................................................GCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................27120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050201300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................20120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................20117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................26117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001100000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001400000000000000000002120000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100200000
.........................................................................................................................................AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................22114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006400000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACTACTAAC-TCTGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................23113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TA-----CTACTACTAAC-TCTGACGG......................................................................................................................................................................................................................................................................................................................................21113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCG....................................................................................................................................................................................................................................................................................................................................20112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002120700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................25110.00100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010300000
........................................TTCCGA-----T----------ATGA-TC---------TGCT-GTGTCTAC----------.................................................................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000040000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................................................................................................................TAAC-TCTGACGGCGGCA-TC-AAGCGAG-C....................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000020000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
.........................................................................................AC----------TA-----CTACTACTAAC-TCTGACG.......................................................................................................................................................................................................................................................................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TC--CTTTCGT-TCACACACAG--AGA------GCGAG..........................................................................................................2718.0080000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TC---------TGCT-GTGTCTAC----------TA-----CTACTACTAAC-..............................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AC----------TA-----CTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GCGGCA-TC-AAGCGAG-CTCTGA...............................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000100000
............................................................................................................CTACTACTAAC-TCTGACGG......................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GATT---------ACCCCCCT---------------------------ACAA-------------------------ACCGACC....2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................TTC-GACAATTGATTGA--TTTATCT.................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000110000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000200000
................................................................................................................TACTAAC-TCTGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAATTATCGATT---------ACCCCCCT---------------------------ACAA-------------------------ACC........2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010400000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101200000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000
..............................................................................................................ACTACTAAC-TCTGACGGCGG...................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000400000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TA-----CTACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................TA-----CTACTACTAAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................CTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CACACAG--AGA------GCGAGGAAGTAATG.................................................................................................2415.0050000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTTA.......................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000021010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGAAGTAATG.................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000200000
...................................................T----------ATGA-TC---------TGCT-GTGTCTAC----------TA-----CTAC......................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................ATGA-TC---------TGCT-GTGTCTAC----------TA-----CT........................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TA-----CTACTACTAAC-TCTGACGGCG....................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................T----------ATGA-TC---------TGCT-GTGTCTAC----------TA-----CTACT.....................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GCA-TC-AAGCGAG-CTCTGAA-GCTT----.....................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................GCA-TC-AAGCGAG-CTCTGA...............................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGTAATG.................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAA.......................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000
................................................................................................................TACTAAC-TCTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................C-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CT.........................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................T-GTGTCTAC----------TA-----CTACTACTAAC-TCTGA.........................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------CTT........................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................A-----CTACTACTAAC-TCTGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................A-----CTACTACTAAC-TCTGACGG......................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GA-----T----------ATGA-TC---------TGCT-GTGTCTAC----------TA-----C.........................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACTACTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................T----CACAA--------TCCA--------------CCCG-AAATTC-GACAATT................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GAGGAAGTAATGTAAATTATC........................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTAAC-TCTGACGGCGGCA-TC-A............................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................TC---------TGCT-GTGTCTAC----------TA-----CTACTACTAA................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................A-----CTACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................AC-GCTTA-----AT----CACAA--------TCCA--------------CC.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GA-----T----------ATGA-TC---------TGCT-GTGTCTA............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GATT---------ACCCCCCT---------------------------ACAA-------------------------ACC........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATC---CTGCATT-------CTCAGTGTGC----CCCAGCTTTCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T----------CAA---------AATCTTATA-TA----TCA-AAATCAC-GCTTA-----AT----C-----------ACCCA--------------CCCT-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCCCACACAG--AGAGCGAGAGCGAGGAAGTAATGTAAATTATCGTAC---------CCC---CT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................TTCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2015.0050000500
...............................................................................................................................................................................................................................................................................................................................GT-TCCCACACAG--AGAGCGAGAGCGAGGA........................................................................................................2814.0040000400
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2314.0041001110
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2613.0030000300
..................................................................................................................................................................................................................................................................................................................................TCCCACACAG--AGAGCGAGAGCGAGGA........................................................................................................2612.0020000110
...............................................................................................................................................................................................................................................................................................................................GT-TCCCACACAG--AGAGCGA.................................................................................................................1912.0020000200
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2512.0020000200
...........................................CGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
...............................................................................................................................................................................................................................................................................................................................................GAGCGAGAGCGAGGAAGT.....................................................................................................1811.0010000100
..........................................................................................C----------T--------ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2311.0010000100
............................................GA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACT..................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..............................................................................................................................................................................................ATA-TA----TCA-AAATCAC-GCTTA-----AT----..................................................................................................................................................................................................................................2211.0010000100
.................................................................A-TC---------TGCT-CTGTCTAC----------T--------ACTA....................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..............................................................................................................ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGAGCGAGAGCGAGG.........................................................................................................2111.0010000010
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2211.0010000010
..........................................................................................................................................................................................................................................................................ATTC-GACAATTGATTGA--TT......................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................AAATTATCGTAC---------CCC---CT---------------------------ACAA-------------------------ACCGA......2611.0010000100
.....................................................................................................T--------ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................................TATGCTC--CTTTCGT-TCCCACACAG--AG......................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2711.0010000100
................................................................................................................................................................................................................................................................................................................................T-TCCCACACAG--AGAGCGAGAGCGAG..........................................................................................................2511.0010000010
..........................................................................................................................................................................................................................................................................................................................................AG--AGAGCGAGAGCGAGGA........................................................................................................1811.0010000100
................................................................................................................................................................................................................................................................................................................................T-TCCCACACAG--AGAGCGAGAGCGAGGA........................................................................................................2711.0010000100
......................................GCTTTCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..........................................................................................................................................................................................................................................................................................................................................AG--AGAGCGAGAGCGAGGAAGTA....................................................................................................2211.0010000010
.............................................A-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACT..................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.....................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAAGTAATGTAAATT...........................................................................................2211.0010000100
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCG....................................................................................................................................................................................................................................................................................................................................2411.0010000100
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2611.0010010000
...............................................................................................................................................................................................................................................................................................................................GT-TCCCACACAG--AGAGCGAGAGCGA...........................................................................................................2511.0010000010
........................................TTTCGA-----T----------ATGA-TC---------TGCT-CT.................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................................................................................................................................................................G--AGAGCGAGAGCGAGGAA.......................................................................................................1811.0010000100
.....................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAAGTAATGTAA..............................................................................................1911.0010000010
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2311.0010000010
......................................................................................................................................................................................................................................................................................GATTGA--TTTATCTAT-----TGCT......................................................................................................................................................1911.0010000010
.......................................................................................................................................C-AAGCGAG-CTCTGAA-GCTA----T----------CA........................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCTA----T----------..........................................................................................................................................................................................................................................................................................2211.0010000100
...............................................................................................................................................................................................................................................................................................................................................GAGCGAGAGCGAGGAAGTA....................................................................................................1911.0010000010
......................................................................................................................C-TCTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2211.0011000000
.........................................................................................................................CTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................................................................................................................................................................................................................CGT-TCCCACACAG--AGAGCG..................................................................................................................1911.0010000100
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2611.0010000100
..........................................................................................C----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCG......................................................................................................................................2411.0010000010
.....................................................................................................................................................................................................................................................................................................................................CACACAG--AGAGCGAGAGCGAGGAA.......................................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................................................................................................GAGAGCGAGGAAGTAATGTA...............................................................................................2011.0010000100
....................................................................................................................AAC-TCTGACGGCGGCA-TC-AAGCGAG-.....................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGAGCGAGAGCGAGGA........................................................................................................2211.0010000100
.............................................................................................................................................................................................TATA-TA----TCA-AAATCAC-GCTT..............................................................................................................................................................................................................................................2011.0010000100
.......................................................................................................................................................................................................................................................................................................................................CACAG--AGAGCGAGAGCGAGGAA.......................................................................................................2211.0010000100
..........ATT-------CTCAGTGTGC----CCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..............................................................................................................ACTACTAAC-TCTGACGGCGGCA-TC-A............................................................................................................................................................................................................................................................................................................................2511.0010000010
................................................................................................................................................................................................................................................................................................................................T-TCCCACACAG--AGAGCGAGAGCGAGGAA.......................................................................................................2811.0010010000
...............................................................................................................CTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2011.0010000010
................................................................................................................................................................................................................................................................................................................................T-TCCCACACAG--AGAGCGAGAGCG............................................................................................................2311.0010000100
........................................TTTCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................................................................................................................C-TCTGACGGCGGCA-TC-AAGCGAG-CTCT.................................................................................................................................................................................................................................................................................................................2711.0010000100
..............................................................................................................................................................................................ATA-TA----TCA-AAATCAC-GCTTA-----........................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................G--AGAGCGAGAGCGAGGAAGT.....................................................................................................2011.0010001000
droYak3
ATC---CTGCATT-------CTCAGTGTAA----CCCAGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------ATTATT-TA----TCA-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGCTC--CTTTCGT-TCACACACAG--AGA------GCGAGGAAGTAATGTAAATTATCGAAA---------CCC--CCT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGA........................................................................................................19115.0015000001140000
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2318.00851010010000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGT.....................................................................................................2214.00400100030000
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2614.00430000010000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2314.00430100000000
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2913.00320000010000
........................................TTCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2113.00301100010000
........................................................................................TAC----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2213.00321000000000
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2613.00301000020000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGTAAT..................................................................................................2513.00300000030000
..........................................................................................C----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2012.00210000010000
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-TCACAC..............................................................................................................................2712.00220000000000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGA........................................................................................................2012.00200000020000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GC...........................................................................................................................................................................................................................................................................................................1912.00210100000000
....................................................................................................................................A-TC-AAGCGAG-CTCTGAA-GCT..........................................................................................................................................................................................................................................................................................................2012.00220000000000
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGA------GCGAGGAAGTAATGTAA..............................................................................................2612.00200000020000
....................................................................................................................................................................................................................................................................................................................................ACACACAG--AGA------GCGAGGAAGT.....................................................................................................2112.00200100010000
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTATATGCTC--CTTTCGT-T...................................................................................................................................2412.00200000020000
....................................................................................................................AAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2212.00220000000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-.............................................................................................................................................................................................................................................................................................................2012.00210100000000
................................................................................................................................................................................................................................................................................................................ATATGCTC--CTTTCGT-TCACACACAG--A.......................................................................................................................2612.00202000000000
...........................................CGA-----T----------ATGA-TC---------TGCT-CTGTC..............................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
........................................................................................................................................................................................................................A-----AT----C-----------ACCCA--------------CCCG-AAATTC-GAC....................................................................................................................................................................................2212.00201100000000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGAA.......................................................................................................2112.00201000010000
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCGG...................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCC................................................................................................................................................................................................2311.00100100000000
.....................................................................................................................................................................................................................................................................CG-AAATTC-GACAATTGATTGA--TT......................................................................................................................................................................2311.00101000000000
............................................................................................................................................CGAG-CTCTGAA-GCTA----T---------------A---------ATT........................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................................................................GCGAG-CTCTGAA-GCTA----T---------------A---------AT.........................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAAA---------CCC--CCT---------------------------ACAA-------------------------ACCGACCGCC.2411.00110000000000
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2611.00100000010000
...................................................................................................................TAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2311.00100010000000
......................................................................................................................................................................................................................................................................................................................................ACACAG--AGA------GCGAGGAA.......................................................................................................1711.00100000100000
.........................................TCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................GCTATATGCTC--CTTTCGT-TCACA...............................................................................................................................2311.00101000000000
........................GTGTAA----CCCAGCTTCCGA-----T----------ATG.....................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATATGCTC--CTTTCGT-TC..................................................................................................................................2311.00100100000000
.................................................................................................................................................................................................................................................................................................ATCTAT-----TGCTATATGCTC--CTTTCGT-TCA.................................................................................................................................2811.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................CC--CCT---------------------------ACAA-------------------------ACCGACCGCCT2011.00100010000000
..........................................................................................................................................................................................................................................................................ATTC-GACAATTGATTGA--TTTATCTAT-----..........................................................................................................................................................2611.00100100000000
..................................................................................................................CTAAC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2411.00100100000000
..................................................................................................................................................................................................................................................................................................................................TCACACACAG--AGA------GCGAGGAAGT.....................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGTAATGT................................................................................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................AGTAATGTAAATTATCGAAA---------CC.........................................................................2211.00101000000000
...........................................................................................................................GACGGCGGCA-TC-AAGCGAG-CTCTG................................................................................................................................................................................................................................................................................................................2411.00101000000000
...................................................................................................................TAAC-TCTGACGGCGGCA-TC-AAGCGAG-CT...................................................................................................................................................................................................................................................................................................................2811.00100100000000
............................................................................................................................................................................................................................................................................................................................TTCGT-TCACACACAG--AGA------GC.............................................................................................................2011.00101000000000
.....................................................................................................................AC-TCTGACGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2111.00110000000000
..............................................................................................................ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................TCAC-GCTTA-----AT----C-----------ACCCA--------------CCC................................................................................................................................................................................................2011.00101000000000
.....................................................................................................................................................................................................................CTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTG...............................................................................................................................................................................3011.00100000010000
....................................................................C---------TGCT-CTGTCTAC----------T--------ACTACT..................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................A-----T----------ATGA-TC---------TGCT-CTGTCT.............................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.................................................................................................................................................................................A---------ATTATT-TA----TCA-AATTCAC-GCTT..............................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................CA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------...........................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................................................................................................................................AT----C-----------ACCCA--------------CCCG-AAATTC-GA.....................................................................................................................................................................................2011.00100100000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------A---------...........................................................................................................................................................................................................................................................................2611.00101000000000
............................................GA-----T----------ATGA-TC---------TGCT-CTGTCTAC----------C--------........................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................G-AAATTC-GACAATTGATTGA--TT......................................................................................................................................................................2211.00100100000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAAGTA....................................................................................................2311.00100000010000
.................................................................................................................................................................................A---------ATTATT-TA----TCA-AATTCAC-GCT...............................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................GGCA-TC-AAGCGAG-CTCTGAA-GCTA----T---------------.....................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................GTCTAC----------T--------ACTACTAAC-TCTGACGGC.....................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................AATTGATTGA--TTTATCTAT-----TGCT......................................................................................................................................................2311.00100100000000
.........................................................................................................................CTGACGGCGGCA-TC-AAGCGAG-CC...................................................................................................................................................................................................................................................................................................................2311.00100100000000
...................................................................................................................................................................................................................................................................................................................................CACACACAG--AGA------GCGAGGAA.......................................................................................................2011.00100000010000
.......................................CTTCCGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................TTCCGA-----T----------ATGA-TC---------TGCT-CT.................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
.............................................................................................................................................................................................................................................................................................................GCTATATGCTC--CTTTCGT-T...................................................................................................................................1911.00100000100000
.............................................................................................................................................................................................................................................................................................................GCTATATGCTC--CTTTCGT-TCACAC..............................................................................................................................2411.00110000000000
.............................................................................................................................................................................................................................................................................C-GACAATTGATTGA--TTTATCTAT-----..........................................................................................................................................................2311.00100100000000
.....................................AGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGTC..............................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................A-----T----------ATGA-TC---------TGCT-CTGTCTAC----------T--------........................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..........................................................................................................................................................................................................................................................................................................................................AG--AGA------GCGAGGAAGTAATGTA...............................................................................................2111.00100010000000
......................................................................................................................C-TCTGACGGCGGCA-TC-AAGCGAG-CTCT.................................................................................................................................................................................................................................................................................................................2711.00110000000000
...........................................................................................................................GACGGCGGCA-TC-AAGCGAG-CTCT.................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................CTAC----------T--------ACTACTAAC-TCTGACGGCGGG..................................................................................................................................................................................................................................................................................................................................2611.00110000000000
....................................................................................................................................................................................................................................................................................................................................................................GTAAATTATCGAAA---------CCC--CCT---------------------------AC......................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................T-----TGCTATATGCTC--CTTTCGT-....................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................ACACACAG--AGA------GCGAGGA........................................................................................................1811.00101000000000
.....................................AGCTTCCGA-----T----------ATGA-TC---------TGCT-CTGC...............................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
........................................TTCCGA-----T----------ATGA-TC---------TGCT-CTGC...............................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................CGAAA---------CCC--CCT---------------------------ACAA-------------------------ACCGACCG...2311.00100100000000
.........................................................................................................................CTGACGGCGGCA-TC-AAGCGAG-CTCT.................................................................................................................................................................................................................................................................................................................2511.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................GCGAGGAAGTAATGTAAATT...........................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................GT-TCACACACAG--AGA------GCGAGGA........................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGAT.............................................................................................................................................................................2811.00101000000000
....................................................................................................................................................................................................................................................................................................................GCTC--CTTTCGT-TCACACACAG--........................................................................................................................2111.00101000000000
............................................................................................................................................................................................TTATT-TA----TCA-AATTCAC-GCTT..............................................................................................................................................................................................................................................2111.00101000000000
...........................................CGA-----T----------ATGA-TC---------TGCT-CTGT...............................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
.....................................................................................................................................................................................................................................................................................................................................CACACAG--AGA------GCGAGGAAGTAATGTAA..............................................................................................2711.00100000010000
..........................................................................................................................................................................................................................................................................ATTC-GACAATTGATTGA--TTTATC..................................................................................................................................................................2311.00101000000000
....................CTCAGTGTAA----CCCAGCTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
.........................................................................................................................CTGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2011.00110000000000
......................................................................................TCTAC----------T--------ACTACTAAC-TCTGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2711.00110000000000
..................................................................................................................................................................................................TA----TCA-AATTCAC-GCTTA-----AT----C-----------ACC...................................................................................................................................................................................................................2311.00100100000000
............................AA----CCCAGCTTCCGA-----T----------ATGA-TC---------T.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
droEug1
CTC---CTGCATT-------ATCTGTGCATC--CCCCAGCTTCCAG-----T----------TTGA-CC---------TCCT-CTGTCTAA----------TA-----CTAATACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTATA-GCTA-----------------AATA---------TTTATA-TA----TCAAAATTCAC-GCTTA-----TT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACACACAG--AGA------GCGAGGAACTTATGTAAATTATCGAAC---------CCC--CCT---------------------------ACAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
droBia1
CTC--CCTGCATT-------CTCTGTGCATT--CCCCAGCTTCCCA-----A----------CTGA-TC---------TGCT-CTGTCTAA----------------ACTACTAATAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTATAAA---------T----AC---TTAACTATTTACCGAAT--CA-AAA----TCA-AATTCAC-GCTTT-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--CTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACACACAG--AGA------GCGAGGAACTCATGTAAATTATCGAAC---------CCC--CCA-------------------------CTGCAA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
TTCTCCCTGCATT-------CTCTGTGCATTTTCCCCAGCTTCCCA-----A---------ACTGA-TC---------TGCT-CTGTCTAC-----------------CTACTACTAACTTCTGACGGCGGCA-TC-AAGCGAG-CTCTAAAAGTTT--TAT---------------A---------CTTATTATA----CCA-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATATGTTC--CTTTCGTTTGACAAACAG--AGA------GCGAGGAACTTATGTAAATTATCGAAC---------CCCC-CCA---------------------------ACAA----------------------ACCTACGACCGCCTSizeHit CountTotal NormTotal
No Reads
droEle1
CTC---CTGCATT-------CTCTGTGCAT----CCCAGCTTTCTACTTGATCTGATCTGAATTGA-TA---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTAC-----------------------------------------C-TA----CAA-CATTCAC-GCTTT-----AT----C-----------ACCAA--------------CCCA-AAATTC-GACAATTAATTTA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACATACAG--AGA------GAGAAGAACATATGTAAATTATTGAAC---------CCC--CCA---------------------------ACCA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
droRho1
CTC---CTGCATT-------CTCTGTGCAT----CCCAGCTTCCGA-----T----------CTGA-TA---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCCGACGGCGGCA-TC-AAGCGAG-CTCTAAA-GCTACATAT----------------------------ACC-TA-----GA-AATTCAC-GCTTT-----TT----C-----------ACAAA--------------CCCG-AAATTC-GACAATTAATTTA--TTTATCTAT-----TGCTATATGTTC--CTTTCGT-TGACATACAG--AGA------GCGAAGAACTTATGTAAATTATTGAAC---------CC-----A---------------------------ACCA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
droFic1
TCC---CTGCATT-------CTCTGTGCAT----CCCAGCTTCCGA-----T----------CTGA-TC---------TGCT-CTGTCTAC----------T--------ACTACTAAC-TCTGACGGCGGCA-TC-AAGCGAG-CTCTGAG-GCTA----T---------------A---------TATATA-TACCTACCC-AATTCAC-GCTTA-----AT----C-----------ACCCA--------------CCCG-AAATTC-GACAATTGATTGA--CTTATCTAT-----TGCAATATGTTC--CTTTCGT-TGACATACAG--AGA------ATGAAGAAATTATGTAAATTATCGATT---------TCC--CCA---------------------------ACCA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
droKik1
ATC---CTGCAT----------------------CCTGGCTTTTGA-----T----------ATGAACC---------TGCT-C---CTAC---GCCC-TAA--------ACTACTAAC-TCTGGCGGCGGCA-TC-AA-CGAG-CTATAAA-A-----------------------------------------------AA-AAATCACTGCTTAAACTCACTCCTC-----------ACCCC----C---------CAAGAAAATTC-GACAATTGATTGA--TTTATCTAT------GCCATGTTTCCCTCTTTCGT-TGCCATACAG--AGA---AAAAAGAAGAAATTATGTAAATTAGCCAAC---------CCC--------------------------------------------------------------CCGACCGCAGSizeHit CountTotal NormTotal
No Reads
droAna3
-TC---TAGCGTT-------C--TGTGCAT----CCTAGCTTTTGA-----T----------CTGA-TC---------TGCTAATGTCTAC----------TA-------GCTACTAAC-TATGACGGCGGCA-TC-AAGCGAG-CTATAAA-TCTA----T----------AAA---------GAAC--AT-AGA----TGA-AATTCACTGCTTA-----ATTT--C-----------ACCCGCT------------TCCA-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCCCACAG--AAAAAGAAAAAGAAGAAATTATGTAAATTAGCCAACTACTAGTCATCCC--GAACCAACCAACCAACCA-----------ACCG-------------------------ACCAACCGCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................CTAC----------TA-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................2413.003110010
......................................................................................................A-------GCTACTAAC-TATGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2212.002010100
........................................TTTTGA-----T----------CTGA-TC---------TGCTAATGTC..............................................................................................................................................................................................................................................................................................................................................................................2312.002020000
..................................................................................................................CTAAC-TATGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................1912.002000020
..............................................................................................................................................................................................................................................................................................................................................................................CAACTACTAGTCATCCC--GAACC................................................................2212.002020000
.......................................................................................CTAC----------TA-------GCTACTAAC-TATGACGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2912.002100010
.......................................................................................................................................C-AAGCGAG-CTATAAA-TCT..........................................................................................................................................................................................................................................................................................................1811.001010000
.............................................................................................................................................................................................................................................................................................................GCTATGTTTCC--CTTTCGT-TGCCCC..............................................................................................................................2411.001100000
.......................................................................................................................................................................................................................TA-----ATTT--C-----------ACCCGCT------------TCCA-AAATTC-.......................................................................................................................................................................................2411.001010000
........................................................................................TAC----------TA-------GCTACTAAC-TATGACGGCGGCA-................................................................................................................................................................................................................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................ATTAGCCAACTACTAGTCATCCC--GAA..................................................................2611.001010000
.....................................................................................................TA-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................GTTTCC--CTTTCGT-TGCCCCACAG--A.......................................................................................................................2411.001100000
..................................................................................................................................GCA-TC-AAGCGAG-CTATAAA-T............................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................ATGACGGCGGCA-TC-AAGCGAG-CT...................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAACCAACCA-----------ACCG-------------------------ACCAACCGC..2311.001010000
.......................................................................................................................................C-AAGCGAG-CTATAAA-TCTA----T----------AAA---------..............................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................CCAACCAACCA-----------ACCG-------------------------ACCAACCGC..2411.001010000
..............................................................................................................................................................................................................................................................................................................................................................................CAACTACTAGTCATCCC--GAACCAACC............................................................2611.001010000
.......................................................................................CTAC----------TA-------GCTACTAAC-TATGACGGCGGC..................................................................................................................................................................................................................................................................................................................................2711.001000010
.......................................................................................CTAC----------TA-------GCTACTAAC-TATGACGG......................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................ATGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2011.001000010
...........................CAT----CCTAGCTTTTGA-----T----------CTGA-TC---------T.......................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................T-----TGCTATGTTTCC--CTTTCGC-....................................................................................................................................2011.001010000
................................................................................................................TACTAAC-TATGACGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2811.001000010
.........................................................................................................................ATGACGGCGGCA-TC-AAGCGAG-C....................................................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................TGATTGA--TTTATCTAT-----TGCT......................................................................................................................................................2011.001001000
..........................GCAT----CCTAGCTTTTGA-----T----------CT......................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................AC----------TA-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................A-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................A-------GCTACTAAC-TATGACGGCGG...................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................TAC----------TA-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................2311.001000010
.............................................................................................................................................................................................................................................................................C-GACAATTGATTGA--TTTATCTAC-----..........................................................................................................................................................2311.001010000
........................................................................................................................TATGACGGCGGCA-TC-AAGCGAG-CTAT.................................................................................................................................................................................................................................................................................................................2611.001000010
................................................................................................................................................................................................................................................................................................TATCTAT-----TGCTATGTTTCC--CTTT........................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................CAACTACTAGTCATCCC--GAAC.................................................................2111.001010000
......................................GCTTTTGA-----T----------CTGA-TC---------TGCT....................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................................CTAAC-TATGACGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................TGTAAATTAGCCAACTACTAGT.............................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................ACTACTAGTCATCCC--GAACCAA..............................................................2211.001001000
......................................................................................TCTAC----------TA-------GCTACTAAC-TATGACGGC.....................................................................................................................................................................................................................................................................................................................................2511.001010000
....................................................................................................................................................TAAA-TCTA----T----------AAA---------GAAC--AT-AGA----..............................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................ATGACGGCGGCA-TC-AAGCGAG-.....................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
-TC---TAGCATT-------C--TGTGCAT----CCTAGCTTTTGA-----T----------CTGA-TC---------TGCTAATGTCTAC----------TA-------CTTACTAAC-TATGACGGCGGCA-TC-AAGCGAG-CTACAAA-TCTA----T----------TAA---------GAAC--AT-AGA----TGA-AATTCACTGCTTA-----ATTT--C-----------ACCCACT------------CCCG-AAATTC-GACAATTGATTGA--TTTATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------AAGAAGAAATTATGTAAATTAGCCAAC---------CCC--CGAA------------CCA-----------ACCA-------------------------ACCGACCGCCTSizeHit CountTotal NormTotal
No Reads
dp5
TCT---CGGC-TTACGCTTGCCCTTTGAAT----------------------------------GT-CCCGCTCTCCC---T-CT------TTCTCTTG----CTGATCTGTTACTAAC-TCTGAAGGCGGCA-TC-AAGCGAA-C-----A-GCTACTTATATATATATATCAAATA---------T--TT-ATA----TCA-AAACCACTGCTTA-----CT----CATAACAATCTCACCCACAACT--AAT-AACTGAG-AGATTC-GACAATTGTTTGA--TTGATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------GCGAAGAGATTCTATAAATTAGAAAACCA-----AACCCC--CAAGCAAGCAATCAACCAACCAACCCACTACCA-----------------------A-CACGACCGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................TCTGTTACTAAC-TCTGAAGGCGGCA-................................................................................................................................................................................................................................................................................................................................25114.001400000001220
...........................................................................................................TCTGTTACTAAC-TCTGAAGGCGG...................................................................................................................................................................................................................................................................................................................................2318.0080000000800
........................................................................................................TGATCTGTTACTAAC-TCTGAAGGCGG...................................................................................................................................................................................................................................................................................................................................2614.0040000000310
...........................................................................................................TCTGTTACTAAC-TCTGAAGGCGGCA-T...............................................................................................................................................................................................................................................................................................................................2612.0020000000110
...................................................................................................................TAAC-TCTGAAGGCGGCA-TC-AAGCGA.......................................................................................................................................................................................................................................................................................................................2512.0020000000200
..........................................................................................................ATCTGTTACTAAC-TCTGAAGGCGGCA-................................................................................................................................................................................................................................................................................................................................2612.0020000000020
........................................................................................................TGATCTGTTACTAAC-TCTGAAGGCG....................................................................................................................................................................................................................................................................................................................................2512.0020000000020
...............................................................................................................TTACTAAC-TCTGAAGGCGGCA-TC-.............................................................................................................................................................................................................................................................................................................................2312.0020000000200
..........................................................................................................ATCTGTTACTAAC-TCTGAAGGCGG...................................................................................................................................................................................................................................................................................................................................2412.0020000000002
................................................................................................................TACTAAC-TCTGAAGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2612.0020000000200
.................................................................................................................................................................................................................................................................................................................TGTTTCC--CTTTCGT-TGCCATACAG--A.......................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................CTCACCCACAACT--AAT-AACTGAG-AGATT.........................................................................................................................................................................................2811.0010100000000
.........................................................................................................GATCTGTTACTAAC-TCTGAAGGCGGCA-................................................................................................................................................................................................................................................................................................................................2711.0010000000001
...............................................................................................CTTG----CTGATCTGTTACTAAC-TCTGGCT.......................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................................................................................................................................................................ATCTCACCCACAACT--AAT-AACTGAG-A.............................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................TTC-GACAATTGTTTGA--TTGATCTAT-----..........................................................................................................................................................2511.0010000000100
.................................................................................................................................GGCA-TC-AAGCGAA-C-----A-GCTACTTATAT..................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................TTGTTTGA--TTGATCTAT-----TGCTATGTT.................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................GATTC-GACAATTGTTTGA--TTGAT...................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCAACCCACTACCA-----------------------A-CACGACC....2611.0010100000000
...............................................................................................................................................................................................................................................................................................TGATCTAT-----TGCTATGTTTCC--CT..........................................................................................................................................2211.0010100000000
...............................................................................................................TTACTAAC-TCTGAAGGCGGCA-TC-AAG..........................................................................................................................................................................................................................................................................................................................2611.0010000000100
......................................................................................................................................................................................................................................................AACT--AAT-AACTGAG-AGATTC-GAC....................................................................................................................................................................................2311.0010100000000
............................................................................................................CTGTTACTAAC-TCTGAAGGCGG...................................................................................................................................................................................................................................................................................................................................2211.0010000000001
............................................................................................................................................................................................................................................TCTCACCCACAACT--AAT-AACTGAG-AGA...........................................................................................................................................................................................2711.0010100000000
........................................................................................................TGATCTGTTACTAAC-TCTGAAGGC.....................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............................................................................................................................................................................................................................CT----CATAACAATCTCACCCACAACT--..........................................................................................................................................................................................................2411.0010010000000
................................................................................................................TACTAAC-TCTGAAGGCGGCA-TC-A............................................................................................................................................................................................................................................................................................................................2311.0010000000100
...............................................................................................................................................................................................................................................CACCCACAACT--AAT-AACTGAG-AGATTC-GA.....................................................................................................................................................................................2911.0010100000000
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATGTTTCC--CTTTCGT-TGCC................................................................................................................................2511.0010100000000
...........................................................................................................TCTGTTACTAAC-TCTGAAGGCG....................................................................................................................................................................................................................................................................................................................................2211.0010000000010
..........................GAAT----------------------------------GT-CCCGCTCTCCC---T-CT------T..........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................GT-TGCCATACAG--AAA------GCGAAGAGA......................................................................................................2411.0010000001000
..........................................................................................................ATCTGTTACTAAC-TCTGAAG.......................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................TG----CTGATCTGTTACTAAA-A.............................................................................................................................................................................................................................................................................................................................................1950.2010100000000
droPer2
TCT---CGGC-TTACGCTTGCCCTTTGAAT----------------------------------GT-CCCGCTCTCCC---T-CT------TTCTCTTG----CTGATCTGTTACTAAC-TCTGAAGGCGGCA-TC-AAGCGAA-C-----A-GCTACTTATATATATATATCAAATA---------T--TT-ATA----TCA-AAACCACTGCTTA-----CT----CATAACAATCTCACCCACAACT--AAT-AACTGAG-AGATTC-GACAATTGTTTGA--TTGATCTAT-----TGCTATGTTTCC--CTTTCGT-TGCCATACAG--AAA------GCGAAGAGATTCTATAAATTAGACAACCA-----AACCCC--CAAGCAAGCAATCAACCAACCAACCCACTACCA-----------------------A-CACGACCGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................AT-----TGCTATGTTTCC--CTTTCGT-TGCC................................................................................................................................2514.004310000
..............................................................................................................GTTACTAAC-TCTGAAGGC.....................................................................................................................................................................................................................................................................................................................................1812.002200000
................................................................................................................TACTAAC-TCTGAAGGCGGC..................................................................................................................................................................................................................................................................................................................................1912.002110000
.............................................................................................................................................GAA-C-----A-GCTACTTATATATAT..............................................................................................................................................................................................................................................................................................2011.001001000
...................................................................................................................................CA-TC-AAGCGAA-C-----A-GCTACTTATAT..................................................................................................................................................................................................................................................................................................2411.001010000
.........................................................................................................GATCTGTTACTAAC-TCTGG.........................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................CTGATCTGTTACTAAC-TCTGAAGGCG....................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................................................................................................................................................................................................................................................................................TATGTTTCC--CTTTCGT-TGCC................................................................................................................................2011.001100000
.................................................................................................................................................................................................ATA----TCA-AAACCACTGCTTA-----CT----..................................................................................................................................................................................................................................2111.001010000
..............................................................................................................GTTACTAAC-TCTGAAGGCGGCA-TC-AAGC.........................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................CGT-TGCCATACAG--AAA------GCGAAG.........................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................GATTC-GACAATTGTTTGA--TTGATCT.................................................................................................................................................................2511.001100000
....................................................................................................................AAC-TCTGAAGGCGGCA-TC-AAGCGAA-.....................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................................................................ATTC-GACAATTGTTTGA--TTGATCT.................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................AACCACTGCTTA-----CT----CATAACAATCT.......................................................................................................................................................................................................................2511.001100000
TCT---CGGC-TTACGCTTGCCCTTTGAAT----------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTATGTTTCC--CTTTCGT-TGC.................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................AACCCC--CAAGCAAGCAATC........................................................1911.001010000
droWil2
ACT---ACATACT-------ACTACTAT-T----CTTAGTTATTTT-----T----------ATCT-TT---------TGCT------TCA----------AA-------CTAACTAAT-TCTGAAGGCGGCGATCTAGACGAGGCTAAGAA-ACAA----A--------------------------------CA----AAA-AATCCAA-A---------------T-----------ATTAA--------------CATG-AAATCCAAACAATTGATATA--TATATATATTTTTTTGCTA--TGTTT--CTTTCGT-TGCCATCTATAGAAAATCAAGAAGAAGAAATTATATAGTTTCTTCAAATA-------TCCCCCCT---------------------------GCAACCCCACAAAAACAAAAAAAAAAACAATCGACCATCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................TAACTAAT-TCTGAAGGCGGCGATCTAGA..........................................................................................................................................................................................................................................................................................................................2814.00404000
......................................................................................................................T-TCTGAAGGCGGCGATCTAGACGAGGC....................................................................................................................................................................................................................................................................................................................2714.00404000
........................................................................................TCA----------AA-------CTAACTAAT-TCTGAAGGCGGC..................................................................................................................................................................................................................................................................................................................................2612.00202000
............................................................................................................................................................................................................................................................................................................TGCTA--TGTTT--CTTTCGT-TGCCATCTAT..........................................................................................................................2712.00202000
.........................................................................................................................................................................................................................................................................................ATA--TATATATATTTTTTTGCTA--TGT................................................................................................................................................2512.00200020
...................................................................................................................................................................................................................................................................................................................................................................TATAGTTTCTTCAAATA-------TCCCCCCT---------------------------GC......................................2712.00202000
................................................................................................................................................................................................................................................................................................................................T-TGCCATCTATAGAAAATC..................................................................................................................1912.00220000
......................................................................................................................................TCTAGACGAGGCTAAGAA-ACAA----A--------------------------------CA----AAA-..........................................................................................................................................................................................................................................................2811.00101000
.........................................................................................CA----------AA-------CTAACTAAT-TCTGAAGGCGGC..................................................................................................................................................................................................................................................................................................................................2511.00110000
..........................................................................................A----------AA-------CTAACTAAT-TCTGAAGGCGGC..................................................................................................................................................................................................................................................................................................................................2411.00100010
................................................................................................................AACTAAT-TCTGAAGGCGGCGATC..............................................................................................................................................................................................................................................................................................................................2311.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAAAAAAAACAATCGACCATC.2811.00101000
.........................................................................................CA----------AA-------CTAACTAAT-TCTGAAGGC.....................................................................................................................................................................................................................................................................................................................................2211.00100100
..........................................................................................................................................................................................................................................................................................................................CTTTCGT-TGCCATCTATAGAAAATC..................................................................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................TTTTTGCTA--TGTTT--CTTTCGT-TGCCATC.............................................................................................................................2811.00101000
.........................TAT-T----CTTAGTTATTTT-----T----------ATCT-TT---------TGCT------..............................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....................................................................................................................................................................................................................................................................................................................................................................TAGTTTCTTCAAATA-------TCCCCCC....................................................................2211.00101000
........................................................................................................................................................................................................................................................................................................................................CTATAGAAAATCAAGAAGAAGA........................................................................................................2211.00100010
...............................................................................................................TAACTAAT-TCTGAAGGCGGCGATC..............................................................................................................................................................................................................................................................................................................................2411.00101000
..........................................................................................................................TGAAGGCGGCGATCTAGACGAGGC....................................................................................................................................................................................................................................................................................................................2411.00101000
........................................................................................................................................TAGACGAGGCTAAGAA-ACAA----A--------------------------------CA----AAA-AA........................................................................................................................................................................................................................................................2811.00101000
...............................................................................................................................................................................................................................................................................................................TA--TGTTT--CTTTCGT-TGCCATCTAT..........................................................................................................................2411.00101000
.....................................................................................................................................................................................................................................................................................................................................CATCTATAGAAAATCAAGAAGAAGA........................................................................................................2511.00100100
...................................................................................................................................................AAGAA-ACAA----A--------------------------------CA----AAA-AATCCAA-A---------------T-----------AT....................................................................................................................................................................................................................2611.00101000
.................................................................................................................................................................................................................................................................................................................................................................TATATAGTTTCTTCAAATA-------TCCCCCC....................................................................2611.00101000
.....................................................................................................................................ATCTAGACGAGGCTAAGA...............................................................................................................................................................................................................................................................................................................1811.00100010
....................................................................................................................................................................................................................................T-----------ATTAA--------------CATG-AAATCCAAACAATTGA..............................................................................................................................................................................2611.00101000
.........................................................................................................................................................................................................................................................................................................................................................................TTCTTCAAATA-------TCCCCCCT---------------------------GCAACCCC................................2711.00101000
.........................................................................................CA----------AA-------CTAACTAAT-TCTGAAGGCGGCGATC..............................................................................................................................................................................................................................................................................................................................2911.00101000
...............................................................................................................TAACTAAT-TCTGAAGGCGGCGA................................................................................................................................................................................................................................................................................................................................2211.00101000
......................TACTAT-T----CTTAGTTATTTT-----T----------ATCT-TT---------........................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..........................................................................................................................................................................................................................................................................................................TTTGCTA--TGTTT--CTTTCGT-TG..................................................................................................................................2111.00100100
.......................................................................................................................................................................................................................................................................................................................T--CTTTCGT-TGCCATCTATAGAAAATC..................................................................................................................2611.00101000
........................................................................................................................TCTGAAGGCGGCGATCTAGACGAGGC....................................................................................................................................................................................................................................................................................................................2611.00101000
droVir3
CTC---TCTCTTT-------AAC-----------TCTTGCTTTTCCC----A----------TTGA--C---------TG------------------------------CTTACTAAT-TTCAAAAGCGGCA-CT-CAATGAA-A-----A-CCTA----T--------------------------------------------------GCTTC-----TTTTCTC-----------AA---CTT-TAAAGC-AAATGAA-AAATTC-AAACATTGATTGATATTGATCTAT-----TGCTAT--TTCC--CTTTCGT-TGACATATAG--AAA------GCGAAGATATCTTATAAATAATCCAAC---------CT---------------------------------CCAC-------------------------ACCGACCGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................T-CAATGAA-A-----A-CCTA----T--------------------------------------------------GCTTC-----TTTT....................................................................................................................................................................................................................................2412.002000000000000000000000000200000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AAATGAA-AAATTC-AAACATTGATT............................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGATTGATATTGATCTAT-----TGCTAT--T.................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TAT-----TGCTAT--TTCC--CTTTCGT-TGACATA.............................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........TT-------AAC-----------TCTTGCTTTTCCC----A----------TTGA--C---------TG------------------------------........................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................TACTAAT-TTCAAAAGCGGCA-CT-CAA..........................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TCGT-TGACATATAG--AAA------GCGAAGATA......................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CATTGATTGATATTGATCTAT-----..........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATGAA-AAATTC-AAACATTGATT............................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTC-AAACATTGATTGATATTGATCTAT-----..........................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
..................................TCTTGCTTTTCCC----A----------TTGA--C---------TG------------------------------CTTAC...................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AA------GCGAAGATATCTTATAAATAATCCA......................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATTGATCTAT-----TGCTAT--TTCC--CTT.........................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTAT--TTCC--CTTTCGT-TGAC................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GATCTAT-----TGCTAT--TTCC--CTTTCGT-T...................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCTAT-----TGCTAT--TTCC--CTTTCGT-T...................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................TCAAAAGCGGCA-CT-CAATGAA-A-----A-CCTA----.....................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
........................................TTTTCCC----A----------TTGA--C---------TG------------------------------CTTACT..................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................A------GCGAAGATATCTTATAAATAATCCA......................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAATAATCCAAC---------CT---------------------------------CCAC-------------------------ACCGACCGCA.2911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AAGCGGCA-CT-CAATGAA-A-----A-C............................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................................TTTCCC----A----------TTGA--C---------TG------------------------------CTTACT..................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGATCTAT-----TGCTAT--TTCC--CTTTCGT-....................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGATATTGATCTAT-----TGCTAT--TTCC--C...........................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TAG--AAA------GCGAAGATATCTTATAAATAA..........................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................G------------------------------CTTACTAAT-TTCAAAAGC.....................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................A-----A-CCTA----T--------------------------------------------------GCTTC-----TTTTCTC-----------AA---.................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTTCGT-TGACATATAG--AAA------GCGAAGAT.......................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
ATC---TCTCTTT-------AACCCTCT-C----TTTACTGCTTT----------------------------------------------------------TTAATGTATTTTTACT-TATAAAAGCGGCA-CG-AAGCGCG-TTACGAA-AATC----------------------------------------------------TCTGCTTT-----AT----C-----------AA---TTT-TAT-------ATAA-AAAGTG-CAACATTGATTGATATTGATCTAT-----TGCTCT--TTCC--CTTTCGT-TGAAATATAG--AAA------ACGAAGAAATCTTATAAATTACCCAAC---------CC-----------------------------------AC-------------------------ACCGACCGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................A-AATC----------------------------------------------------TCTGCTTT-----AT----C-----------AA---TTT-T............................................................................................................................................................................................................2212.002200000
.........................................................................................................................................................................................................................................................................................................................................................................TTACCCAAC---------CC-----------------------------------AC-------------------------ACCGACC....2011.001100000
.................................................................................................................................GGCA-CG-AAGCGCG-TTACGAA-A............................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................CGGCA-CG-AAGCGCG-TTACGA...............................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................ATTGATATTGATCTAT-----TGCTCT--..................................................................................................................................................2211.001000001
........................................................................................................................................................................................................................................................................................TTGATATTGATCTAT-----TGCTCT--..................................................................................................................................................2111.001100000
............................................................................................................................................................C----------------------------------------------------TCTGCTTT-----AT----C-----------AA---TTT-TAT-------ATAA-A.............................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................TGATATTGATCTAT-----TGCTCT--TTCC--CTT.........................................................................................................................................2711.001100000
..........................................................................................................................................AGCGCG-TTACGAA-AATC----------------------------------------------------TCTGCTTT-----AT----C-----------......................................................................................................................................................................................................................2811.001100000
.................................................................................................................................GGCA-CG-AAGCGCG-TTACGAA-AATC----------------------------------------------------T....................................................................................................................................................................................................................................................2511.001100000
..........................CT-C----TTTACTGCTTT----------------------------------------------------------TTAATGT........................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................CGT-TGAAATATAG--AAA------ACGA...........................................................................................................2011.001100000
..............................................................................................................ATTTTTACT-TATAAAAGCGGCA-CG-A............................................................................................................................................................................................................................................................................................................................2511.001000001
.......CTCTTT-------AACCCTCT-C----TTTACTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................TGAAATATAG--AAA------ACGAAGAAAT.....................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................CTAT-----TGCTCT--TTCC--CTTTCGT-T...................................................................................................................................2211.001100000
..............................................................................................................................AGCGGCA-CG-AAGCGCG-TTAC.................................................................................................................................................................................................................................................................................................................2011.001001000
...................................................................................................................................CA-CG-AAGCGCG-TTACGAA-AATC----------------------------------------------------TCTGC................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................AA-AATC----------------------------------------------------TCTGCTTT-----AT----C-----------AA---TTT-T............................................................................................................................................................................................................2311.001100000
...........................................................................................................................................GCGCG-TTACGAA-AATC----------------------------------------------------TCTGCTTT-----........................................................................................................................................................................................................................................2411.001100000
...........................................................................................................TGTATTTTTACT-TATAAAAGC.....................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................TTACGAA-AATC----------------------------------------------------TCTGCTT..............................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................GGCA-CG-AAGCGCG-TTACGA...............................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
ATCTC-TTGCTTT-------AACTTTCT-T----TCTATCTCTTC-----------------------------------------------------------------ATAACTAAC-------CT-------------------------------------------------------------------------------------CTTT-----ATTT--C-----------TCCAACTT-TAAAGCAAAATGAA-CATTTC-AAGAATTGATTGATATTGATCTAT-----TGCTAT--TTTC--ATCTCCT-TGATATACAG--AAA------ACGAAGATATCATGTAAATTACCCAAA---------CC-----------------------------------AC-------------------------ACCGACCGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:42 PM