ID:

dsi_21158

Coordinate:

3r:17631688-17631837 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-29.1	-29.0	-29.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CTGCCTGAGTCCGCGCTCAGCTTATTTCTACGAATTTCCACCGACAGCTGGTAAGTTGAAAGGAGAAAAGTCCGGAGAAGTAAAATTCTTATCCTGGTAGAGGATTTCTAAAGCCTTTGTGTAAAGGTGATGAGCTTTGTACTTAACGTTTAAAAGAAATCTTTAGACTTTAGTTTTTTAATTTATTTATTAAAGTGCAGCTGCGAAGCTGCAGTAAATGTAGAGCACAATTGTAATGAGGTCAGAATTT ************************************************(((((((((((((...((((((.(((.(((.......))).))).....((((((((((.((((....((((((((........)))))))).....))))...)))))))))).))))))..)))))))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body
.............................................................................................................................GGTGATGAGCTTTGTACTTAAC.......................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
......................................................................................TCTTAGCCTGGTAGA.....................................................................................................................................................	15	1	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................TGCAGAAAATGTAGAGCACAAG...................	22	2	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................TTGTAATGAGGTCAGAGCT.	19	2	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................CTTAGCCTGGTAGAG....................................................................................................................................................	15	1	2	0.50	1	0	1	0	0	0	0	0
...................................................................................................TAGGATTTCTAGAGCCT......................................................................................................................................	17	2	6	0.17	1	0	0	0	1	0	0	0
.....................................................................................................................TGTGGAACGGTGATGAGCC..................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................TAGTTGTAATGAGGTCGGA....	19	3	12	0.08	1	0	0	0	0	1	0	0
..................................................................AACGTCCGGAGACGTAA.......................................................................................................................................................................	17	2	12	0.08	1	0	0	0	1	0	0	0
.......................................................................................CTTAGCCTGGTAGAGC...................................................................................................................................................	16	2	16	0.06	1	0	1	0	0	0	0	0
..........................................................................................AGCCTGGTAGAGTATT................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................AAAGAAATCTTCAGA...................................................................................	15	1	20	0.05	1	0	0	0	1	0	0	0
............................................................................................................................................................AAATCTTTAGCCTTT...............................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0
..............................................GCTGGAAGGTTAAAAGGAG.........................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

GACGGACTCAGGCGCGAGTCGAATAAAGATGCTTAAAGGTGGCTGTCGACCATTCAACTTTCCTCTTTTCAGGCCTCTTCATTTTAAGAATAGGACCATCTCCTAAAGATTTCGGAAACACATTTCCACTACTCGAAACATGAATTGCAAATTTTCTTTAGAAATCTGAAATCAAAAAATTAAATAAATAATTTCACGTCGACGCTTCGACGTCATTTACATCTCGTGTTAACATTACTCCAGTCTTAAA ************************************************(((((((((((((...((((((.(((.(((.......))).))).....((((((((((.((((....((((((((........)))))))).....))))...)))))))))).))))))..)))))))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................................................................................................ACGCTTCGACGTCATTTCCAA............................	21	2	1	1.00	1	1	0	0	0	0	0
....................................................................TCAGGCCTCTTCATTTTAAGAA................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................ACGTTTCGATGTCATTTCCA.............................	20	3	8	0.25	2	1	0	0	1	0	0
..............................................................................................................................................................................................................TCGACGTCATTTCCAT............................	16	1	4	0.25	1	1	0	0	0	0	0
.........................................................................................................................................................................................................ACGCTTCAACGTCATTTC...............................	18	2	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................................................ACTTCGACGTCATTTCCA.............................	18	2	7	0.14	1	0	0	1	0	0	0
.........................................................................................................AAGATTTCGGAAGCA..................................................................................................................................	15	1	7	0.14	1	0	0	1	0	0	0
..........................................................................................................................................................................................................CGTTTCGATGTCATTTCCA.............................	19	3	20	0.10	2	1	1	0	0	0	0
...........................................................................................................................................................................................................ACTTCGACGTCATTTCCAC............................	19	3	20	0.10	2	0	0	0	0	2	0
..............................................................................................................................................................................................................TCGACGTCATTTCCA.............................	15	1	13	0.08	1	0	0	0	0	0	1
...................CGAATACAGCTGCTTA.......................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0

Generated: 04/23/2015 at 11:57 PM