dsi_2113

GTCTAAAAATCTACGAAGGCGTCACAATGCAGATGAATTCCATCGAGAGGGTGCGTCAAGGCAGAGCGCACACTGATAAGTGTCACTCTAATAGCTCTAATAAATCACAGGTCGACGATAATAATTTCGATGTGTCATTTTTTTTTTATTTTTCTTTGACCTGTTATGTCTGGGTCTGATCTCAAAAGAAGTATTTTAATTAAAGCAGTGTTCTTGAATATGCGAGACATCTCTCGGGTATGCTGCAGTC *********************************************************************************************...........(((((((((.((.(((((....((((...))))......)))))..)).)))))))))......((((......))))........********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries
.....................................................................................................AAATCACAGTCCGACGATCA.................................................................................................................................	20	3	8	0.50	4	0	4	0	0	0	0
..............................................................................................................................................................................TCTGATCTCAAAAGAAGTACTTTAATTA................................................	28	1	5	0.40	2	2	0	0	0	0	0
........................CAATGCATATGAATTCCATCGAGAGGG.......................................................................................................................................................................................................	27	1	4	0.25	1	0	0	0	0	1	0
...............................................................................................TCTAATAAATCACAGGTCGACGATAATAAT.............................................................................................................................	30	0	4	0.25	1	0	0	1	0	0	0
.....................................TTCCATCGAGAGGGTGCGTCAAGGCAGA.........................................................................................................................................................................................	28	0	4	0.25	1	0	0	1	0	0	0
....................................................................................................................GATAATAATTTCGATGTGTCATTTTT............................................................................................................	26	0	4	0.25	1	1	0	0	0	0	0
.................................................................................................................................................................................................TTTTAATTAAAGCAGTGTTCTTGAA................................	25	0	4	0.25	1	0	0	1	0	0	0
....................................................................................................................................................................TATGTCTGGGTCTGATCTCAAAAGAAGT..........................................................	28	0	4	0.25	1	1	0	0	0	0	0
....................................ATTCCATCGAGAGGGTGCGTCAAGGC............................................................................................................................................................................................	26	0	4	0.25	1	0	0	1	0	0	0
.....................................................................................................................................................................ATGTCTGGGTCTGATCTCAAAAGAAGT..........................................................	27	0	4	0.25	1	1	0	0	0	0	0
.....................................................................................................AAATCACAGTCCGACGATC..................................................................................................................................	19	3	20	0.20	4	0	3	0	0	0	1
......................................................................................................................................................................................................................................CTCTCGGGTATGCTC.....	15	1	5	0.20	1	0	0	1	0	0	0
...................................................................................................................................................................................................................TCTTGAATAGTCGAGACA.....................	18	2	6	0.17	1	1	0	0	0	0	0
......................................................................................................AATCACAGTCCGACGATCA.................................................................................................................................	19	3	12	0.17	2	0	2	0	0	0	0
..............................................................................................................................................................................TCTGATCTCAAAAGAACTACTTTAAT..................................................	26	2	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................TCTGATCTCAAAAGAAGTATTTTAAT..................................................	26	0	6	0.17	1	1	0	0	0	0	0
......................................................................................................................................................TTTCTTTGACCTGTTAT...................................................................................	17	0	6	0.17	1	0	0	0	1	0	0
......................................................................................................AATCACAGTCCGACGATA..................................................................................................................................	18	2	7	0.14	1	0	1	0	0	0	0
....................................................................................................AAAATCACAGTCCGACGATA..................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0	0
.....................................................................................................AAAACACAGTCCGACGATA..................................................................................................................................	19	3	20	0.10	2	0	2	0	0	0	0
......................................................................................................AATCACAGTCCGACGATC..................................................................................................................................	18	3	20	0.10	2	0	2	0	0	0	0
......................................................................................................AATCACAGGTCCTCGATAGT................................................................................................................................	20	3	10	0.10	1	0	0	0	1	0	0
........................................................................................................TAACAGTCCGACGATAATAA..............................................................................................................................	20	3	14	0.07	1	0	1	0	0	0	0
...................................GGTTCCATCGAGAGGGAGCG...................................................................................................................................................................................................	20	3	19	0.05	1	0	0	0	1	0	0
...................TGTTACAATGCAGATGA......................................................................................................................................................................................................................	17	2	19	0.05	1	1	0	0	0	0	0
......................................................................................................AATCACAGGTCGACTTT...................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0
...................................................................................................................................................................................................................TCTTGAGTATGAGAGA.......................	16	2	20	0.05	1	0	0	0	0	1	0
....................................................................................................................GATAACAATTTCGAT.......................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0

CAGATTTTTAGATGCTTCCGCAGTGTTACGTCTACTTAAGGTAGCTCTCCCACGCAGTTCCGTCTCGCGTGTGACTATTCACAGTGAGATTATCGAGATTATTTAGTGTCCAGCTGCTATTATTAAAGCTACACAGTAAAAAAAAAATAAAAAGAAACTGGACAATACAGACCCAGACTAGAGTTTTCTTCATAAAATTAATTTCGTCACAAGAACTTATACGCTCTGTAGAGAGCCCATACGACGTCAG ********************************************************...........(((((((((.((.(((((....((((...))))......)))))..)).)))))))))......((((......))))........*********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries
...............................................................................................................................................................GGACAATACAGACCCAGACTAGAGT..................................................................	25	0	4	0.25	1	0	1	0	0	0	0
.....................GGTGTTACGTCTACTTAAGGTAGCTCT..........................................................................................................................................................................................................	27	1	4	0.25	1	0	0	0	1	0	0
...................................................................................................................................................................................AGAGTTTTCTTAATAAACTTAAT................................................	23	2	6	0.17	1	1	0	0	0	0	0
.TGATGTTTAGATGCTTCC.......................................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	1	0	0	0
...................................................................................................................................................................................AGAGTTTTCTTAATAAACTTAAAT...............................................	24	3	8	0.13	1	1	0	0	0	0	0
............TGCTTCCGCAGCGTTA..............................................................................................................................................................................................................................	16	1	10	0.10	1	0	0	1	0	0	0
.............................................................................................................CCAGCTGGAATGATTAAAG..........................................................................................................................	19	3	16	0.06	1	0	0	0	0	1	0
...........................................................................................................................................AAAAAAAATAAAAAGACTCAGGA........................................................................................	23	3	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................AAAAAAAATATAACAGGAAACT...........................................................................................	22	3	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................GGCTCCACAGCAAAAAAAAAA.......................................................................................................	21	3	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................AAAAAAATAAGAAGAAAC............................................................................................	18	1	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:22998112-22998361 +	dsi_2113	GTCTAAAAATCTACGAAGGCGTCACAATGCAGATGAATTCCATCGAGAGGGTGCGTCAAGGCAGAGCGCACACTGATAAGTGTCACTCTAATAGCTCTAATAAATC--------------ACAGGTCGACGATAATAATTT-CGATGTGTCATTTTTTTTTTATTTTTCTTTGACCTGTTATGTCTGGGTCTGATCTCAAAAGAAGTATTTTAATTAAAGCAGTGTT-CTTGAATATGCGAGACATCTCTCGGGTATGCTGCAGTC
droSec2	scaffold_51:65019-65240 +		GTCTAAAAATCTACGAAGGCGTCACAATGCAGATGAATTCCATCGAGAGGGTGCGTCAAGGCAGAGCGCACACTGATAAGTGTCACTCTAATAACTCTAATAAATC--------------ACAGGTCGACGATAATAATTT-CGATGTGTCATT-CTTTTTTATTTTTCTTTGACCTGTTATGTCTGGGTCTGATCTCAAAAGAAGTATTTTAATTAAAGCAGTGTT-CGTGAATATGC---------------------------
dm3	chr3RHet:1696912-1697066 -		C----------------------------------------------------------------------------------------------TCTAGTAAGGC--------------ATATACAGACTCAAATGACGC-TGACTTATCATT-TTTTCCCAGCTTTCTGTGTCCGCTTATAAATGGGTCGGACCTTATTAGAAGTGAATTCATAATGTCTGCATC-TGTTGCAATGCGTGACATCTTCCGGCTGTGATTAAGTC
droEre2	scaffold_4929:20923226-20923265 -		ATCTTAGAATTCACGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTCCCAATGAAGATGGATTC
droYak3	v2_chrUn_3008:1512-1665 +		-----------------------------------------------------------------------------------------------TCTAACAAATC--------------ACAGGTCGACGATAATAATTT-CGATTTGTCATT-TATTTTTATTTTTCTTTGACCTGTTATGTAGGGGTCTAATCTCAAAAGAAGTATTTTAATTAAATCCGTGTT-CGTGATTATAGGAGACATCTTTCGGGTATGCTGCAGTC
droEug1	scf7180000409148:28371-28469 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTGCCCACTTATAAATGGGCCTGAGGCTAACAGAAATCTAATTAATAAATCCCTATT-TAAATCTACTCGAGACATTTTTCTAGTGTGAAACTCCC
droBia1	scf7180000302022:25833-26006 -		ATA---------------------------------------------------------------------------ACAGTTAATCAAATAATTCTTACAAATC--------------TAACGTTAATTTCATTAAATT-GGGTTTAAGTTT-GCAAGGTAAAATTCTTAGTCCTGTATTAACAGGATCAGAAAACAAAAGTTGTCTATTAATTAAATACCTATT-TGTGGCAATTCGAGATATTTTTCGGATGTTCTGCTTTC
droTak1	scf7180000412610:11318-11500 +		AA----------------------------------------------------------ACAAAACAAAAATTAACAAATATC----------TTCTAATAATTC--------------AAATGTAGAGAAAAGCAATCTTGTATTTGTCTTT-CTTTGGTAGTTTTCTTTGACTTGTTATAAAAGGATCTGAACGCAACAGAAGTGTATTAATTAAATCTGTATTTTGTCAGAATGCGAGACATCTTCCTAGTATGTTGCAGCC
droEle1	scf7180000490366:8376-8529 -		-----------------------------------------------------------------------------------------------TCTAATAAATC--------------AAATGTAGAGAAAATCAATCT-TGATTTGTCTTT-CTTTGGTAGTTTTCTTTGACTTGTTATAAAAGGATCTGAACGCAACAGAAGTGTATTAATTAAATCTGTATT-TGTCAGTATGCGAGACATCTTCCGAGTATGTTGCAGCC
droRho1	scf7180000778317:19564-19754 +		AA----------------------------------------------------------GCAAAACGAACAATAATAAAAATTAAATGGTTTCATCAAGTAACAA--------------AAGAGTTGACTCTAATAGTTT-TGACTTTTCCTT-ATAATTTACTTTTCTTTGTCTACTAATAAATGGATCGGAACTTAAAAGCAGTCTGTTAATTAAGTCTGTATT-TGAGGCGATCCTTGAAATTTTGCGTGTATGTAGGAGTC
droFic1	scf7180000453550:10635-10788 +		-----------------------------------------------------------------------------------------------TCTAATAAGTC--------------AAATGTTGATGATAAAAATTT-GGATTTATTCCT-CTTTGGCAGTTTTCTTTGACCTGTTATAAAGGGATCAGATCGTAAGAGAAGTATATTCATTAAATCCTTATT-TGTCAATATGCGAGACATCTTCCGAGTATGTTGAAGCC
droKik1	scf7180000298039:4338-4491 -		-----------------------------------------------------------------------------------------------TCTAACAAGTC--------------AAATGTTGATGATAAAAATTT-GGATTTATCTCT-CTTTGGCAGTTTTCTTTGACCTGTTATAAAGGGGTCAGAACGTAAAAGAAGTATATTCATTAAATCCTTATT-TGTCAATATGCGAGACATCTTCCGAGTATGTTGAAGTC
droAna3	scaffold_13417:747837-748002 +		ATATTA---------------------------------------------------------------------ACAAATATC------TTTCCACTAATAAATC--------------AAATGTGCTGGGAAAAAAATT-AGATTTGTCTCT-TTCTGATAGTTTTCTTTTACTTGTTATGAAAAGGTCTGAACGCGAAAGAAGTGTATTAATTAAGTCTGTATT-TGTCAATATGCGAGACATTTTCCGAGTATG--------
droBip1	scf7180000391367:221-375 +		C----------------------------------------------------------------------------------------------TCAAGCAAGCT--------------ATGAACTGAGGGAAATAATTT-TAAATTGTCCTT-TTTTTCAATATTTCTCTGCCCAGTAATATATGGGTCAGACCGTAAAAGCAAATAATTCAATATGTCTGTATT-TGTAAGTATTCGAGACATTTTGCGGGTATGATTCAGTC
dp5	Unknown_group_30:19831-19984 -		-----------------------------------------------------------------------------------------------TCAAATATATC--------------ATATGTAGATGATATAAAAGT-TGATTTGTGATT-CTTTGGCAGATTAGTTTGACCTGTTATAAAAGGGTCTGACCTCAAAAGAAGCGTTTTAGTCAAATCTGTATT-TGTCAGTATACGAGACATCTTCCGAGTATGCTGCAGAC
droPer2	scaffold_66:322615-322782 -		-----------------------------------------------------------------------------------------------TCTAATAATACATTATCTGATAGTCATATGTAGATGATATAAAAGT-GGATTTGTGATT-CTTTGGCAGATTTCTTTGACCTGTTATAAAAGGGTCTGACCTCAAAAGAAGAGTTTTAATCAAATCGGTATT-TGTCAGTATACGAGACATCTTCCGAGTATGCTGCAGAC
droWil2	scf2_1100000004397:5270-5423 -		-----------------------------------------------------------------------------------------------TCCAATAAATC--------------ATATGTAGATGATAAAAAAGT-GGATTTCTGATT-CTTTGGCATATTTCTTTGACCTGTTATAAAAAGGTCTGATTTCAAAAGAAGCATTTTAATTAAATCTGTATT-TGTCAGTATACGAGACATCTTCCTAGTATGCTGCAGCC
droVir3	scaffold_12958:3002192-3002236 -		ATTTTAGAGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAGGCCGGA----------------------------------------------------------------TTGCAACG
droMoj3	scaffold_6540:4377722-4377867 -		-----------------------------------------------------------------------------------------------TCTAATGATTC--------------ATACACTGG---TAATAAAGT-CGACTTATCTCT-TTTGGGAAGCTCTCTTTGACCTGTTATAAATAGATCTGATCTTAAGAGTAGTGTGTTCATAACATCTGTGTT-TGTTAAAGTACGAGAGATCTTGCGACTGTGCTG-----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTCTAAAAATCTACGAAGGCGTCACAATGCAGATGAATTCCATCGAGAGGGTGCGTCAAGGCAGAGCGCACACTGATAAGTGTCACTCTAATAGCTCTAATAAATC--------------ACAGGTCGACGATAATAATTT-CGATGTGTCATTTTTTTTTTATTTTTCTTTGACCTGTTATGTCTGGGTCTGATCTCAAAAGAAGTATTTTAATTAAAGCAGTGTT-CTTGAATATGCGAGACATCTCTCGGGTATGCTGCAGTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................TCTAATAAATC--------------ACAGGTCGACGATAATAAT...............................................................................................................................	30	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................TTCCATCGAGAGGGTGCGTCAAGGCAGA.........................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................GATAATAATTT-CGATGTGTCATTTTT.............................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTTTAATTAAAGCAGTGTT-CTTGAA................................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATGTCTGGGTCTGATCTCAAAAGAAGT...........................................................	28	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................ATTCCATCGAGAGGGTGCGTCAAGGC............................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ATGTCTGGGTCTGATCTCAAAAGAAGT...........................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CTCTCGGGTATGCTC.....	15	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCTGATCTCAAAAGAAGTATTTTAAT...................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TTTCTTTGACCTGTTAT....................................................................................	17	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTCTAAAAATCTACGAAGGCGTCACAATGCAGATGAATTCCATCGAGAGGGTGCGTCAAGGCAGAGCGCACACTGATAAGTGTCACTCTAATAACTCTAATAAATC--------------ACAGGTCGACGATAATAATTT-CGATGTGTCATT-CTTTTTTATTTTTCTTTGACCTGTTATGTCTGGGTCTGATCTCAAAAGAAGTATTTTAATTAAAGCAGTGTT-CGTGAATATGC---------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

C----------------------------------------------------------------------------------------------TCTAGTAAGGC--------------ATATACAGACTCAAATGACGC-TGACTTATCATT-TTTTCCCAGCTTTCTGTGTCCGCTTATAAATGGGTCGGACCTTATTAGAAGTGAATTCATAATGTCTGCATC-TGTTGCAATGCGTGACATCTTCCGGCTGTGATTAAGTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................TCGGACCTTATTAGAAGT...........................................................	18	3	116.33	349	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	67	60	46	62	113	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCGGACCTTATTAGAAGTGAATTC.....................................................	24	2	25.00	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	9	10	10	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TGGGTCGGACCTTATTAGAAGT...........................................................	22	3	23.00	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	10	10	10	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTAGAAGTGAATTCATAATGTCTGC..........................................	25	4	22.25	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	3	5	1	5	0	0	0	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	4	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	27	0	0	0	0	0	0	0	0	2	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................TAAATGGGTCGGACCTTATTAGAAGT...........................................................	26	2	22.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	0	6	1	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	5	1	0	0	0	0	0
........................................................................................................................................................................................................TAGAAGTGAATTCATAATGTCTGCA.........................................	25	4	21.50	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	9	0	0	3	0	5	2	0	3	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	20	0	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGCGTGACATCTTCCGGCTGTGAT......	24	4	20.75	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	1	3	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	5	0	4	1	3	13	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	17
.......................................................................................................................................................................................................TTAGAAGTGAATTCATAATGTCTGCA.........................................	26	4	16.75	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	2	6	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	2	1	4	2	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	7	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	7	4	0	0	0	0	0	0
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............................................................................................................................................................................................................................................TGCGTGACATCTTCCGGCTGTGATTA....	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATTAGAAGTGAATTCATAATGTCTGC..........................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AAGTGAATTCATAATGTCTGCA.........................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATCTTAGAATTCACGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTCCCAATGAAGATGGATTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

-----------------------------------------------------------------------------------------------TCTAACAAATC--------------ACAGGTCGACGATAATAATTT-CGATTTGTCATT-TATTTTTATTTTTCTTTGACCTGTTATGTAGGGGTCTAATCTCAAAAGAAGTATTTTAATTAAATCCGTGTT-CGTGATTATAGGAGACATCTTTCGGGTATGCTGCAGTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................AAATCCGTGTT-CGTGATTATAGGAG........................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
............................................................................................................................................................................................................................................TAGGAGACATCTTTCGGGTATGCTGC....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................AACAAATC--------------ACAGGTCGACGATAATAAT...............................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCTTTGACCTGTTATGTAGGGGTC...........................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TTATTTTTCTTTGACCTGTTATGTA.................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTTATTTTTCTTTGACCTGTTATG...................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTGCCCACTTATAAATGGGCCTGAGGCTAACAGAAATCTAATTAATAAATCCCTATT-TAAATCTACTCGAGACATTTTTCTAGTGTGAAACTCCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATA---------------------------------------------------------------------------ACAGTTAATCAAATAATTCTTACAAATC--------------TAACGTTAATTTCATTAAATT-GGGTTTAAGTTT-GCAAGGTAAAATTCTTAGTCCTGTATTAACAGGATCAGAAAACAAAAGTTGTCTATTAATTAAATACCTATT-TGTGGCAATTCGAGATATTTTTCGGATGTTCTGCTTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AA----------------------------------------------------------ACAAAACAAAAATTAACAAATATC----------TTCTAATAATTC--------------AAATGTAGAGAAAAGCAATCTTGTATTTGTCTTT-CTTTGGTAGTTTTCTTTGACTTGTTATAAAAGGATCTGAACGCAACAGAAGTGTATTAATTAAATCTGTATTTTGTCAGAATGCGAGACATCTTCCTAGTATGTTGCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------------------------------------------------------------------------------------------TCTAATAAATC--------------AAATGTAGAGAAAATCAATCT-TGATTTGTCTTT-CTTTGGTAGTTTTCTTTGACTTGTTATAAAAGGATCTGAACGCAACAGAAGTGTATTAATTAAATCTGTATT-TGTCAGTATGCGAGACATCTTCCGAGTATGTTGCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AA----------------------------------------------------------GCAAAACGAACAATAATAAAAATTAAATGGTTTCATCAAGTAACAA--------------AAGAGTTGACTCTAATAGTTT-TGACTTTTCCTT-ATAATTTACTTTTCTTTGTCTACTAATAAATGGATCGGAACTTAAAAGCAGTCTGTTAATTAAGTCTGTATT-TGAGGCGATCCTTGAAATTTTGCGTGTATGTAGGAGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------------------------------------------------------------------TCTAATAAGTC--------------AAATGTTGATGATAAAAATTT-GGATTTATTCCT-CTTTGGCAGTTTTCTTTGACCTGTTATAAAGGGATCAGATCGTAAGAGAAGTATATTCATTAAATCCTTATT-TGTCAATATGCGAGACATCTTCCGAGTATGTTGAAGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------------------------------------------------------------------------------TCTAACAAGTC--------------AAATGTTGATGATAAAAATTT-GGATTTATCTCT-CTTTGGCAGTTTTCTTTGACCTGTTATAAAGGGGTCAGAACGTAAAAGAAGTATATTCATTAAATCCTTATT-TGTCAATATGCGAGACATCTTCCGAGTATGTTGAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATATTA---------------------------------------------------------------------ACAAATATC------TTTCCACTAATAAATC--------------AAATGTGCTGGGAAAAAAATT-AGATTTGTCTCT-TTCTGATAGTTTTCTTTTACTTGTTATGAAAAGGTCTGAACGCGAAAGAAGTGTATTAATTAAGTCTGTATT-TGTCAATATGCGAGACATTTTCCGAGTATG--------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATA..............................	25	18	3.72	67	21	31	15	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATATGC...........................	28	16	3.44	55	16	37	1	1	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATATG............................	27	17	1.53	26	17	6	2	0	1	0
................................................................................................................................................................................TGTTATGAAAAGGTCTGAACGCGA..................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................TC------TTTCCACTAATAAATC--------------AAATGTGCT.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................TATGAAAAGGTCTGAACGCGAAAGA..............................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................GTCTGAACGCGAAAGAAGT...........................................................	19	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATATGC...........................	27	16	0.56	9	3	6	0	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATAT.............................	26	17	0.35	6	5	1	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATATG............................	26	17	0.29	5	3	2	0	0	0	0
........................................................................................................TC--------------AAATGTGCTGGGAAAAAAATT-AGAT........................................................................................................................	27	7	0.29	2	1	0	1	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATA..............................	24	18	0.28	5	4	0	1	0	0	0
...........................................................................................................................TGTGCTGGGAAAAAAATT-AGATTTGTC...................................................................................................................	27	4	0.25	1	0	0	1	0	0	0
..............................................................................................................................GCTGGGAAAAAAATT-AGATTTGTCTC.................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................ATGTGCTGGGAAAAAAATT-AGATTTGT....................................................................................................................	27	5	0.20	1	0	0	1	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAAT...............................	24	18	0.17	3	0	2	0	1	0	0
................................................................................................................................TGGGAAAAAAATT-AGATTTGTCTCT-T..............................................................................................................	26	6	0.17	1	0	1	0	0	0	0
....................................................................................................TAAATC--------------AAATGTGCTGGGAAAAAAA...............................................................................................................................	25	7	0.14	1	0	0	0	0	1	0
........................................................................................................TC--------------AAATGTGCTGGGAAAAAAATT-AGATT.......................................................................................................................	28	7	0.14	1	0	0	1	0	0	0
.................................................................................................TAATAAATC--------------AAATGTGCTGGGAAAAAA................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0
.............................................................................................................................TGCTGGGAAAAAAATT-AGATTTGT....................................................................................................................	24	7	0.14	1	0	0	1	0	0	0
........................................................................................................TC--------------AAATGTGCTGGGAAAAAAATT-AGA.........................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
....................................................................................................TAAATC--------------AAATGTGCTGGGAAAAAAATT-............................................................................................................................	27	7	0.14	1	0	1	0	0	0	0
....................................................................................................TAAATC--------------AAATGTGCTGGGAAAAA.................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATATGCGA.........................	29	15	0.13	2	1	0	0	0	1	0
......................................................................................................................................................................................................................TTAAGTCTGTATT-TGTCAATATGCGA.........................	26	17	0.12	2	0	0	2	0	0	0
.......................................................................................................................................................................................................AAAGAAGTGTATTAATTAAGTCTGT..........................................	25	17	0.12	2	0	2	0	0	0	0
..............................................................................................................................................................................................................TGTATTAATTAAGTCTGTATT-TGTC..................................	25	18	0.11	2	0	2	0	0	0	0
................................................................................................................................................................................................................TATTAATTAAGTCTGTATT-TGTCAATA..............................	27	18	0.11	2	0	1	0	0	0	1
.......................................................................................................................................................................................................AAAGAAGTGTATTAATTAAGTCTGC..........................................	25	18	0.11	2	0	2	0	0	0	0
..........................................................................................................................................................................................................GAAGTGTATTAATTAAGTCTGTATT-......................................	25	18	0.11	2	1	1	0	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTC..................................	21	19	0.11	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................TAAGTCTGTATT-TGTCAATATGCGAGA.......................	27	13	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................TAAGTCTGTATT-TGTCAATATGCGAGAC......................	28	13	0.08	1	0	1	0	0	0	0
........................................................................................................................................................................................................................AAGTCTGTATT-TGTCAATATGCGAG........................	25	15	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATATGCG..........................	28	15	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATATGCGG.........................	29	15	0.07	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATATGCG..........................	29	15	0.07	1	1	0	0	0	0	0
..................................................................................................AATAAATC--------------AAATGTGCTGGGAAAA..................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATATC............................	27	17	0.06	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TGTATTAATTAAGTCTGTATT-TGTCAATA..............................	29	17	0.06	1	0	1	0	0	0	0
.......................................................................................................ATC--------------AAATGTGCTGGGAAA...................................................................................................................................	18	17	0.06	1	0	1	0	0	0	0
.................................................................................................TAATAAATC--------------AAATGTGCTGGGAAA...................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGTCAATAT.............................	25	17	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TGTATTAATTAAGTCTGTATT-TGTCA.................................	26	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................TAAGTCTGTATT-TGTCAATATGCGA.........................	25	17	0.06	1	0	0	1	0	0	0
..................................................................................................................................................................................................................TTAATTAAGTCTGTATT-TGTCAATATT............................	27	17	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................................................................GAAGTGTATTAATTAAGTCTGTATT-TG....................................	27	18	0.06	1	0	0	1	0	0	0
...............................................................................................................................................................................................................GTATTAATTAAGTCTGTATT-TGTC..................................	24	18	0.06	1	0	1	0	0	0	0
.................................................................................................................................................................................................................ATTAATTAAGTCTGTATT-TGTCAATA..............................	26	18	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................................TAATTAAGTCTGTATT-TGT...................................	19	19	0.05	1	0	1	0	0	0	0

droBip1

C----------------------------------------------------------------------------------------------TCAAGCAAGCT--------------ATGAACTGAGGGAAATAATTT-TAAATTGTCCTT-TTTTTCAATATTTCTCTGCCCAGTAATATATGGGTCAGACCGTAAAAGCAAATAATTCAATATGTCTGTATT-TGTAAGTATTCGAGACATTTTGCGGGTATGATTCAGTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----------------------------------------------------------------------------------------------TCAAATATATC--------------ATATGTAGATGATATAAAAGT-TGATTTGTGATT-CTTTGGCAGATTAGTTTGACCTGTTATAAAAGGGTCTGACCTCAAAAGAAGCGTTTTAGTCAAATCTGTATT-TGTCAGTATACGAGACATCTTCCGAGTATGCTGCAGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCAGTA..............................	26	1	490.00	490	0	24	0	0	1	0	0	465	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACC..........................................................................................	26	1	127.00	127	0	114	9	0	0	0	0	4	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGAT....................................................................................................	23	1	76.00	76	0	55	0	0	0	0	1	20	0	0
.................................................................................................................................................TTTGTGATT-CTTTGGCAGATTAGTT...............................................................................................	25	1	33.00	33	0	10	0	0	0	0	0	23	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCTG........................................................................................	28	1	32.00	32	0	31	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTG.....	25	1	30.00	30	0	30	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGC.......	23	1	29.00	29	0	22	2	0	3	0	0	2	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGC....	26	1	25.00	25	0	23	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCAG................................	24	1	24.00	24	0	7	0	0	0	0	0	17	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCAGT...............................	25	1	22.00	22	0	4	0	0	0	0	0	18	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGCA...	27	1	20.00	20	0	19	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTAGTCAAATCTGTATT-TGTCAGTA..............................	25	1	16.00	16	0	3	0	0	0	0	0	13	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTGG.........................................................................................................	25	1	15.00	15	0	6	0	0	0	0	0	9	0	0
...................................................................................................................................................TGTGATT-CTTTGGCAGATTAGTT...............................................................................................	23	1	15.00	15	0	10	1	0	0	0	0	4	0	0
................................................................................................................................................ATTTGTGATT-CTTTGGCAGATTAGTT...............................................................................................	26	1	14.00	14	0	10	0	0	0	0	0	4	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCT......	24	1	14.00	14	0	11	1	0	2	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGA.....................................................................................................	22	1	13.00	13	0	7	0	0	0	0	0	6	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTGGCA.......................................................................................................	27	1	12.00	12	0	12	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGTTTTAGTCAAATCTGTATT-TG....................................	23	1	12.00	12	0	1	0	0	0	0	0	11	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTC..................................	22	1	11.00	11	0	2	1	0	0	0	0	8	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGAC...........................................................................................	25	1	11.00	11	0	10	1	0	0	0	0	0	0	0
............................................................................................................................................T-TGATTTGTGATT-CTTTGGCAGAT....................................................................................................	24	1	10.00	10	0	6	0	0	0	0	0	4	0	0
....................................................................................................................................................GTGATT-CTTTGGCAGATTAGTTTGACC..........................................................................................	27	1	10.00	10	0	9	1	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCT.........................................................................................	27	1	10.00	10	0	8	2	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGCAG..	28	1	10.00	10	0	10	0	0	0	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCA.......................................................................................................	20	1	9.00	9	0	7	0	0	0	0	0	2	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATTA..................................................................................................	25	1	9.00	9	0	7	0	0	1	0	0	1	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAG......................................................................................................	21	1	8.00	8	0	6	0	0	1	0	0	1	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGC........................................................................................................	19	1	8.00	8	0	7	0	0	0	0	0	1	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATTAGT................................................................................................	27	1	7.00	7	0	4	0	0	0	0	0	3	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATTAG.................................................................................................	26	1	7.00	7	0	6	0	0	0	0	0	1	0	0
...............................................................................................................................................GATTTGTGATT-CTTTGGCAGAT....................................................................................................	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................GATT-CTTTGGCAGATTAGTTTGACC..........................................................................................	25	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCAGTAA.............................	27	1	6.00	6	0	0	0	0	0	0	0	6	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCA.................................	23	1	6.00	6	0	1	0	0	0	0	0	5	0	0
...........................................................................................................................TGTAGATGATATAAAAGT-TGATTTG.....................................................................................................................	25	1	5.00	5	0	1	0	0	0	0	0	4	0	0
....................................................................................................................................TATAAAAGT-TGATTTGTGATT-CTT............................................................................................................	24	1	5.00	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAGA..............................................................	23	1	5.00	5	0	2	0	0	0	0	0	3	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTGGC........................................................................................................	26	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATT...................................................................................................	24	1	4.00	4	0	1	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................TCAGTATACGAGACATCTTCCGAGTA..........	26	1	4.00	4	0	3	1	0	0	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATTAGTT...............................................................................................	28	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGA............................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATAAAAGGGTCTGACCTCAAAAGA..............................................................	25	1	4.00	4	0	2	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAGAAGC...........................................................	26	1	4.00	4	0	0	0	0	0	0	0	4	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAGAAGCG..........................................................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTA..........	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTGGCAG......................................................................................................	28	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ACGAGACATCTTCCGAGTATGCTGCA...	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TATGTAGATGATATAAAAGT-TGATT.......................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TATACGAGACATCTTCCGAGTATGC.......	25	1	3.00	3	0	2	0	0	0	0	0	1	0	0
................................................................................................................................................................................TGTTATAAAAGGGTCTGACCTCAAAAG...............................................................	27	1	3.00	3	0	1	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGTCAGTAG.............................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................TGACCTCAAAAGAAGCGTTTTAGTCAA................................................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................................TGACCTGTTATAAAAGGGTCTGACC......................................................................	25	1	3.00	3	0	2	1	0	0	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATA...................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTGTGATT-CTTTGGCAGATTAGT................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................TT-TGTCAGTATACGAGACATCTTC................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................TGATATAAAAGT-TGATTTGTGATT-CTT............................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................................................TATAAAAGT-TGATTTGTGATT-CTTTGG.........................................................................................................	27	1	3.00	3	0	2	0	0	0	0	0	1	0	0
..............................................................................................................................................................TGGCAGATTAGTTTGACCTGTTATA...................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................................................TGTGATT-CTTTGGCAGATTAGTTTGACC..........................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTAGTTTGACCTGTTATAAAAGGGT............................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................................................TT-TGTCAGTATACGAGACATCTTCCG..............	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGCGTTTTAGTCAAATCTGTATT-T.....................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...........................................................................................................................................................................TGACCTGTTATAAAAGGGTCTGACCT.....................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTAGTTTGACCTGTTATAAAAGGGTC...........................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGTTATAAAAGGGTCTGACCTCAAAA................................................................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................TAGTCAAATCTGTATT-TGTCAGTA..............................	24	1	2.00	2	0	1	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................TCAAAAGAAGCGTTTTAGTCAAATC.............................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................TGTGATT-CTTTGGCAGATTAG.................................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................GAGACATCTTCCGAGTATGCTGCAG..	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGTTTGACCTGTTATAAAAGGG.............................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................GTGATT-CTTTGGCAGATTAGTTTG.............................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTGTGATT-CTTTGGCAGATTAGTT...............................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGCAGA.	29	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACAA.........................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGTTTTAGTCAAATCTGTATT-TGTCA.................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTTGTGATT-CTTTGGC........................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ACGAGACATCTTCCGAGTATGCTGC....	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGA...........	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTCAGTATACGAGACATCTTCCGAG............	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTG..........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................TTGTGATT-CTTTGGCAGATTAGTTT..............................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATT-TGTCAGTATACGAGACATCT..................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAA..................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GACATCTTCCGAGTATGCTGCAGAC	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCA.........................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGTTTGACCTGTTATAAAAGGGTCA..........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................ATTTGTGATT-CTTTGGCAGATTAG.................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCTGT.......................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................AAAGT-TGATTTGTGATT-CTTTGGCAGA.....................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCC......	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................TT-CTTTGGCAGATTAGTTTGACCTGT.......................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTGGCAGATTAGTTTGACCTG........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTAT.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................ATAAAAGT-TGATTTGTGATT-CTTTGG.........................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................T-TGATTTGTGATT-CTTTGGCAGATA...................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................T-TGATTTGTGATT-CTTTGGCAAC.....................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................ATTTGTGATT-CTTTGGCAGATTAGT................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................T-TGATTTGTGATT-CTTTGGCAG......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTAT........................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................GTATACGAGACATCTTCCGAGTATG........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GATT-CTTTGGCAGATTAGTTT..............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGTTTGACCTGTTATAAAAGGGC............................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTA..............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................GTTATAAAAGGGTCTGACCTCAAAA................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CGAGACATCTTCCGAGTATGCTGC....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-CTTTGGCAGATTAGTTTGACC..........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TATAAAAGT-TGATTTGTGATT-CTTTG..........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................TATAAAAGGGTCTGACCTCAAAAGAAG............................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................AAAAGT-TGATTTGTGATT-CTTTGGC........................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGACCTGTTATAAAAGGGTCTGACCTCAA..................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TTTGGCAGATTAGTTTGACCTGTTA.....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-CTTTGGCAGATTAGTTTGACCTGTTA.....................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTAGTTTGACCTGTTATAAAAGGG.............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................TATAAAAGGGTCTGACCTCAAAA................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TT-CTTTGGCAGATTAGTTTGACCT.........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TGATTTGTGATT-CTTTGGCAGATTAGA................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................TC--------------ATATGTAGATGATATAAA................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGCAC..	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGATTAGTTTGACCTGTT......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGT...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TGATATAAAAGT-TGATTTGTGATT-...............................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTTGTGATT-CTTTGGCAGATTAGTT...............................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCTT........................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................ATAAAAGT-TGATTTGTGATT-CTTTGGCA.......................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAGAAGCGT.........................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TCCGAGTATGCTGCAGAC	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTAGTCAAATCTGTATT-TGTCA.................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTGGCAGATTAGTTTGACCTGTTA.....................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCAGTATACGAGACATCTTCCGA.............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGTA..........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T-TGTCAGTATACGAGACATCTTCCGAG............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGTTTTAGTCAAATCTGTATT-TGT...................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGTTATAAAAGGGTCTGACCTCAA..................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACCTGTTATAAAAGGGTCTGA........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................TCTTCCGAGTATGCTGCAGAC	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T-TGTCAGTATACGAGACATCTTCCGAA............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................ATAAAAGT-TGATTTGTGATT-CTTTG..........................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T-TGTCAGTATACGAGACATCTTCCG..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TATC--------------ATATGTAGATGATATAAAAGT-............................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGT...........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TAAAAGT-TGATTTGTGATT-CTTTGGCAT......................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTTAGTCAAATCTGTATT-TGT...................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................TTAGTCAAATCTGTATT-TGTCAG................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-CTTTGGCAGATTAGTTTGACCTG........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GT-TGATTTGTGATT-CTTTGGC........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCTGACCTCAAAAGAAGC...........................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTTGTGATT-CTTTGGCAGA.....................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAG...............................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................ACGAGACATCTTCCGAGTATGCT......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CGAGACATCTTCCGAGTATGCT......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CATCTTCCGAGTATGCTGCA...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGT-TGATTTGTGATT-CTTTGGCAG......................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GTTTTAGTCAAATCTGTATT-TGTCA.................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGTGATT-CTTTGGCAGATTAGTTTGAC...........................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTGTGATT-CTTTGGCAGATTAG.................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TAGATGATATAAAAGT-TGATTTGTGATA-...............................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TACGAGACATCTTCCGAGTATGCTGCAGT.	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTCAGTATACGAGACATCTTCCGAGTA..........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TATAAAAGT-TGATTTGTGATT-CTTTGGC........................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................GTAGATGATATAAAAGT-TGATTTGTGA..................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAGGGTCTGACCTCAAAAGAAG............................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGTCAGTATACGAGACATCTTCCGAGT...........	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................TT-TGTCAGTATACGAGACATCTTCCGA.............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGTATT-TGTCAGTATACGAGACATC...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AGACATCTTCCGAGTATGCTGCAG..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTAGTTTGACCG.........................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGTATACGAGACATCTTCCGAGTA..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GT-TGATTTGTGATT-CTTTGGCAGAT....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................GT-TGATTTGTGATT-CTTTGGCAGA.....................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGATT-CTTTGGCAGATTA..................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------------------TCTAATAATACATTATCTGATAGTCATATGTAGATGATATAAAAGT-GGATTTGTGATT-CTTTGGCAGATTTCTTTGACCTGTTATAAAAGGGTCTGACCTCAAAAGAAGAGTTTTAATCAAATCGGTATT-TGTCAGTATACGAGACATCTTCCGAGTATGCTGCAGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGTA..........	25	2	23.00	46	5	40	1	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAG............	23	2	7.50	15	0	15	0	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGT...........	24	2	4.00	8	0	8	0	0	0	0
........................................................................................................................................................................................................................................AGTATACGAGACATCTTCCGAGTA..........	24	2	2.50	5	0	5	0	0	0	0
......................................................................................................................................................................................................................................TCAGTATACGAGACATCTTCCGAGTA..........	26	2	1.50	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGTATG........	27	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AGTATACGAGACATCTTCCGAGTATG........	26	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................GTATACGAGACATCTTCCGAGTATG........	25	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AGTATACGAGACATCTTCCGAG............	22	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................CAGTATACGAGACATCTTCCGAGTATGC.......	28	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GTCAGTATACGAGACATCTTCCGAGTA..........	27	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TT-TGTCAGTATACGAGACATCTTCC...............	25	2	0.50	1	0	1	0	0	0	0

droWil2

-----------------------------------------------------------------------------------------------TCCAATAAATC--------------ATATGTAGATGATAAAAAAGT-GGATTTCTGATT-CTTTGGCATATTTCTTTGACCTGTTATAAAAAGGTCTGATTTCAAAAGAAGCATTTTAATTAAATCTGTATT-TGTCAGTATACGAGACATCTTCCTAGTATGCTGCAGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

ATTTTAGAGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAGGCCGGA----------------------------------------------------------------TTGCAACG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...TTAGAGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AAT.................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTAGAGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------A...................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AATG................................................................................	22	20	1.00	20	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	0	5	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AAT.................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AA..................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------AATT................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------A...................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------A...................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTCAACAAAGGTTTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-----------------------------------------------------------------------------------------------TCTAATGATTC--------------ATACACTGG---TAATAAAGT-CGACTTATCTCT-TTTGGGAAGCTCTCTTTGACCTGTTATAAATAGATCTGATCTTAAGAGTAGTGTGTTCATAACATCTGTGTT-TGTTAAAGTACGAGAGATCTTGCGACTGTGCTG-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACATC.............................................	25	1	9.00	9	2	0	0	0	1	6
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACATCT............................................	26	1	7.00	7	0	0	0	0	0	7
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACATCTG...........................................	27	1	6.00	6	0	0	0	0	0	6
.....................................................................................................................................................................................................TAAGAGTAGTGTGTTCATAACATCTG...........................................	26	1	6.00	6	1	0	0	0	0	5
.......................................................................................................................................................................................................................................TAAAGTACGAGAGATCTTGCGACTG..........	25	1	3.00	3	1	0	0	0	0	2
..................................................................................................................................................TTATCTCT-TTTGGGAAGCTCTCTTTG.............................................................................................	26	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................TAGATCTGATCTTAAGAGTAGTGT.........................................................	24	1	3.00	3	1	0	0	0	0	2
..................................................................................................................................................TTATCTCT-TTTGGGAAGCTCTCTTT..............................................................................................	25	1	2.00	2	1	0	0	0	0	1
...................................................................................................................................................................................................CTTAAGAGTAGTGTGTTCATAACATC.............................................	26	1	2.00	2	1	0	0	0	0	1
..................................................................................................................................................................................................................................T-TGTTAAAGTACGAGAGATCTTGCG..............	25	1	2.00	2	1	0	0	0	0	1
.......................................................................................................................................................................................................................................TAAAGTACGAGAGATCTTGCGACT...........	24	1	2.00	2	1	0	0	0	0	1
..................................................................................................................................................................................................................................T-TGTTAAAGTACGAGAGATCTTGCGAC............	27	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................TTATCTCT-TTTGGGAAGCTCTCTTTGACC..........................................................................................	29	1	2.00	2	1	0	0	0	0	1
...........................................................................................................................................................................................................................................GTACGAGAGATCTTGCGACTGTGC.......	24	1	2.00	2	1	0	0	0	0	1
...........................................................................................................................CACTGG---TAATAAAGT-CGACTTATCTCT-C..............................................................................................................	28	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................TAACATCTGTGTT-TGTTAAAGTACG..........................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACATCTGTG.........................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TCTGTGTT-TGTTAAAGTACGAGAGA.....................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAAGTACGAGAGATCTTGCGA.............	22	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................AAAGTACGAGAGATCTTGCGACTA..........	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................TAAAGTACGAGAGATCTTGCGACTGTGC.......	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................AGAGTAGTGTGTTCATAACATC.............................................	22	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................TTTGGGAAGCTCTCTTTGACC..........................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACATCTC...........................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................ATAGATCTGATCTTAAGAGTAGTGTGT.......................................................	27	1	1.00	1	0	0	0	0	0	1
........................................................................................................................ATACACTGG---TAATAAAGT-CGACTTATC...................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................T-TGTTAAAGTACGAGAGATCTTGC...............	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CGAGAGATCTTGCGACTGTGCT......	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................ACACTGG---TAATAAAGT-CGACTTATCTCT-T..............................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................TAGATCTGATCTTAAGAGTAGTGTGTT......................................................	27	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................TAATAAAGT-CGACTTATCTCT-TTTGGG.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................CACTGG---TAATAAAGT-CGACTTATC...................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................TGTTATAAATAGATCTGATCTTAAGAG...............................................................	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................TAAGAGTAGTGTGTTCATAACATCTGT..........................................	27	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................CTTATCTCT-TTTGGGAAGCTCTCTTT..............................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................TAGTGTGTTCATAACATCTGTGTT-TC....................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................TT-TGTTAAAGTACGAGAGATCTTG................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................TAGTGTGTTCATAACATCTGTGTC-C.....................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TTAAGAGTAGTGTGTTCATAACAT..............................................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................TAGATCTGATCTTAAGAGTAGTGTG........................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................TAAAGT-CGACTTATCTCT-TTTGGGAAGC.....................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................TCTGATCTTAAGAGTAGTGTGTTCA....................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................TTTGGGAAGCTCTCTTTGACCTGTTA.....................................................................................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................TACGAGAGATCTTGCGACTGTGCT......	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TAAAGT-CGACTTATCTCT-TTTGGG.........................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TCTGATCTTAAGAGTAGTGTGTTCAT...................................................	26	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................AAGAGTAGTGTGTTCATAACATCTG...........................................	25	1	1.00	1	0	0	0	0	0	1

dsi_2113

3l:22998162-22998311 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.6	-15.6	-15.6