ID:

dsi_21114

 Coordinate:

4:40254-40403 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -8.9 -8.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
mature
  1. 2l:18415678-18415692 -
  2. dsi_21114  4:40357-40371 +
star

Sense Strand Reads

TTTGTAATGCTTACATAGTTGGGGTATAGATAGATTTTTATCCAATCGGCATACCTGCAAAATATCAAAGTTTTATAAGTAAAATTATTTCATTTAAAAATTATATTTAAACAAATGTATTTCAGCACTTTAGCTTTCATCATAAATGACAGAGACGAAAAATAACAACATCATATTAAATAATAAAAATGCAATAATATATGCAACAATTTCCTTTTTCTATATTTTGCAACGTTCTTTAAAACCAAGA
**************************************************.(((.((.(((((......))))).)).)))..((((((.(((((.....((((((((((....((((...............((.((((.....)))).))...............))))....)))))).))))))))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................................................AGTGACGAAAAATAACAA.................................................................................. 18 1 3 703.67 2111 1782 324 2 0 0 1 0 1 1 0 0
......................................TATCCAATCGGCATACCTGCAAAATA.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................CAGTGACGAAAAATAACAA.................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGAAAAATAACAA.................................................................................. 15 0 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0
.........................................................................................................................................................GACGAAAAATAACAATA................................................................................ 17 1 7 0.57 4 0 0 0 3 0 0 0 1 0 0 0
.....................................................................................................................................................TAGAGACGAAAAATAAC.................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................AGTGACGAAAAATAAC.................................................................................... 16 1 6 0.50 3 0 0 0 2 0 1 0 0 0 0 0
......................................................................................................................................................AGTGACGAAAAATAACA................................................................................... 17 1 5 0.40 2 0 0 0 0 1 0 0 1 0 0 0
.........................................................................................................................................................GACGAAAAATAACGA.................................................................................. 15 1 15 0.27 4 0 0 0 0 0 4 0 0 0 0 0
......................................................................................................................................................AGTGACGAAAAATAA..................................................................................... 15 1 20 0.25 5 0 0 0 1 0 3 0 1 0 0 0
.................................................................................................................................................ATGACGGAGACGAAA.......................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................TGACGAAAAATAACAA.................................................................................. 16 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................GGAAGGGACGAAAAATAACA................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................CAACGATCTTTAAAA...... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AAACATTACGAATGTATCAACCCCATATCTATCTAAAAATAGGTTAGCCGTATGGACGTTTTATAGTTTCAAAATATTCATTTTAATAAAGTAAATTTTTAATATAAATTTGTTTACATAAAGTCGTGAAATCGAAAGTAGTATTTACTGTCTCTGCTTTTTATTGTTGTAGTATAATTTATTATTTTTACGTTATTATATACGTTGTTAAAGGAAAAAGATATAAAACGTTGCAAGAAATTTTGGTTCT
**************************************************.(((.((.(((((......))))).)).)))..((((((.(((((.....((((((((((....((((...............((.((((.....)))).))...............))))....)))))).))))))))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 M023
head
 SRR902008
ovaries
 SRR902009
testis
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 0 1 6482.00 6482 3068 1543 1291 293 30 86 87 37 32 11 4 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 0 1 2061.00 2061 1032 738 0 263 0 8 14 1 2 0 1 2
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 27 0 1 354.00 354 196 82 45 3 0 12 15 0 0 0 0 1
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 28 0 1 240.00 240 159 69 1 2 0 6 3 0 0 0 0 0
......................................................................................................................TAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 29 0 1 124.00 124 62 22 18 12 7 0 0 2 1 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTA.............................................................................................................. 21 0 1 106.00 106 0 0 106 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAG............................................................................................................. 22 0 1 98.00 98 0 0 84 5 1 0 0 7 0 1 0 0
..............................................................................................................................TGAAATCGAAAGTAGTATTTA....................................................................................................... 21 0 1 88.00 88 0 0 88 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGT............................................................................................................... 20 0 1 78.00 78 2 0 71 2 1 0 0 2 0 0 0 0
.........................................................................................................................AGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 26 0 1 69.00 69 29 16 3 0 0 15 6 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTATAAT........................................................................ 25 0 1 63.00 63 0 0 0 2 55 0 0 0 2 4 0 0
......................................................................................................................AAAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 30 1 1 43.00 43 21 22 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTT........................................................................................................ 27 0 1 42.00 42 4 3 2 23 1 0 0 8 1 0 0 0
..........................................................................................................................................................TGCTTTTTATTGTTGTAGTATAAT........................................................................ 24 0 1 31.00 31 0 0 0 10 9 0 0 2 10 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATT......................................................................................................... 26 0 1 28.00 28 3 3 9 11 0 1 0 1 0 0 0 0
...................................................................................................................................TCGAAAGTAGTATTTA....................................................................................................... 16 0 1 27.00 27 0 1 24 0 0 2 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTAT.......................................................................................................... 25 0 1 27.00 27 6 1 8 10 0 0 0 1 0 1 0 0
......................................................................................................................AAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 29 1 1 25.00 25 19 6 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAG................................................................................................................ 19 0 1 25.00 25 0 0 25 0 0 0 0 0 0 0 0 0
...............................................................................................................................GAAATCGAAAGTAGTATTTA....................................................................................................... 20 0 1 24.00 24 0 0 23 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTA........................................................................................................... 24 0 1 21.00 21 0 0 3 7 0 0 0 9 1 1 0 0
................................................................................................................................AAATCGAAAGTAGTATTTA....................................................................................................... 19 0 1 19.00 19 0 0 19 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 27 0 1 19.00 19 12 2 0 1 0 3 0 0 0 0 1 0
.......................................................................................................................AAAGTCGTGAAATCGAAA................................................................................................................. 18 0 1 19.00 19 0 0 18 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGT............................................................................................................ 23 0 1 18.00 18 0 0 10 6 0 0 0 2 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTG....................................................................................................... 28 1 1 18.00 18 11 6 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 24 0 1 17.00 17 0 0 15 2 0 0 0 0 0 0 0 0
....................................................................................................................CATAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 31 0 1 17.00 17 6 11 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTATAATT....................................................................... 26 0 1 15.00 15 0 0 0 0 15 0 0 0 0 0 0 0
......................................................................................................................CAAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 30 1 1 12.00 12 4 8 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 30 0 1 12.00 12 5 7 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTGAAATCGAAAGTAGTATTTA....................................................................................................... 22 0 1 12.00 12 0 0 12 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATCGAAAGTAGTATTTA....................................................................................................... 17 0 1 12.00 12 2 2 8 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGGGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 12.00 12 5 1 0 6 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTT....................................................................................................... 28 1 1 11.00 11 4 5 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTAT........................................................................... 22 0 1 10.00 10 0 0 0 0 6 0 0 0 2 2 0 0
.......................................................................................................................AAAGTCGTGAAATCGAA.................................................................................................................. 17 0 1 9.00 9 0 0 9 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCG.................................................................................................................... 15 0 1 9.00 9 0 0 9 0 0 0 0 0 0 0 0 0
..................................AAAAATAGGTTAGCCGTATGGACACTT............................................................................................................................................................................................. 27 2 1 9.00 9 0 6 2 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TCTCTGCTTTTTATTGTTGTAGTATAAT........................................................................ 28 0 1 9.00 9 0 0 0 0 6 0 0 0 3 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAATAGTATTTA....................................................................................................... 28 1 1 9.00 9 3 1 4 1 0 0 0 0 0 0 0 0
..........................................................................................................................GTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 25 0 1 8.00 8 1 0 7 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTGA....................................................................................................... 28 1 1 8.00 8 4 1 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGCTTTTTATTGTTGTAGTATAAT........................................................................ 26 0 1 7.00 7 0 0 0 1 5 0 0 0 0 1 0 0
......................................................................................................................................................TCTCTGCTTTTTATTGTTGTAGTATA.......................................................................... 26 0 1 7.00 7 0 0 0 1 6 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTAA....................................................................................................... 28 1 1 7.00 7 0 0 7 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTTAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 7.00 7 3 3 0 1 0 0 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTAGTATTTA....................................................................................................... 23 0 1 7.00 7 0 0 4 1 1 0 0 0 0 1 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAGGTAGTATTTA....................................................................................................... 28 1 1 6.00 6 4 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................CAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 29 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTGGTATTTA....................................................................................................... 28 1 1 6.00 6 1 0 3 1 0 0 0 1 0 0 0 0
.......................................................................................................................AAAATCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 6.00 6 1 1 3 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTAGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 6.00 6 3 2 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTATTATTTA....................................................................................................... 28 1 1 6.00 6 2 0 4 0 0 0 0 0 0 0 0 0
..................................AAAAATAGGTTAGCCGTATGGACAC............................................................................................................................................................................................... 25 2 1 6.00 6 1 3 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTAT...................................................................................................... 29 1 1 6.00 6 2 2 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................TGCTTTTTATTGTTGTAGTATAATT....................................................................... 25 0 1 5.00 5 0 0 0 2 2 0 0 0 1 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAGAGTAGTATTTA....................................................................................................... 28 1 1 5.00 5 3 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGCCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 5.00 5 2 0 2 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTATTGTTGTAGTATAAT........................................................................ 18 0 1 5.00 5 0 1 2 0 1 0 0 1 0 0 0 0
...................................................................................................................................................................TTGTTGTAGTATAATT....................................................................... 16 0 1 5.00 5 1 0 4 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTCA....................................................................................................... 28 1 1 5.00 5 0 1 4 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTTTATTGTTGTAGTATAAT........................................................................ 21 0 1 5.00 5 0 0 0 3 0 0 0 0 2 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTA........................................................................................................ 27 1 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATT..................................................................................... 18 0 1 4.00 4 0 0 0 0 3 0 0 0 0 1 0 0
................................................................................................................................AAATCGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 28 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AATAAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 31 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCTGCTTTTTATTGTTGTAGTATAAT........................................................................ 27 0 1 4.00 4 0 0 0 1 2 0 0 0 0 1 0 0
.......................................................................................................................GAAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 4.00 4 0 0 3 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGGATTTA....................................................................................................... 28 1 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAGGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAGTAGTATTTACTGTCT................................................................................................. 18 0 1 4.00 4 0 0 0 0 3 0 0 1 0 0 0 0
.................................................................................................................................................................TATTGTTGTAGTATAAT........................................................................ 17 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTTAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 4.00 4 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCTGCTTTTTATTGTT.................................................................................. 18 0 1 4.00 4 0 0 0 0 4 0 0 0 0 0 0 0
..................................................................................................................................................................ATTGTTGTAGTATAAT........................................................................ 16 0 1 3.00 3 1 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGAAGTATTTAC...................................................................................................... 29 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTAGTTA....................................................................................................... 28 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTAGTATTTACTGTCTCTGCTTTTT........................................................................................ 25 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTATA.......................................................................... 23 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
.......................................................................................................................AGAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATTG.................................................................................... 19 0 1 3.00 3 0 0 0 0 0 0 0 1 2 0 0 0
.......................................................................................................................AAAGTCGTGAAACCGAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 1 0 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATGTA....................................................................................................... 28 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGCAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................CGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 24 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCTAAAGTAGTATTTA....................................................................................................... 27 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCAAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAGATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAATTAGTATTTAC...................................................................................................... 29 1 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGACATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCTGCTTTTTATTGTTGTAG.............................................................................. 22 0 1 3.00 3 0 0 0 0 2 0 0 0 1 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAT............................................................................................................. 22 1 1 3.00 3 0 0 1 0 0 0 2 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTACT..................................................................................................... 30 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
..........................ATCTATCTAAAAATAGGTTAGCCGT....................................................................................................................................................................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTGT....................................................................................................... 28 2 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTA............................................................................ 21 0 1 3.00 3 0 0 0 0 2 0 0 0 0 1 0 0
.......................................................................................................................AAAGTCCTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 0 1 0 0 1 0 0 1 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGA................................................................................................................... 16 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAACGTAGTATTTA....................................................................................................... 28 1 1 3.00 3 0 0 1 1 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCATGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGAATTTA....................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATGTAC...................................................................................................... 29 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATAGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAG................................................................................................................ 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGAGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGCATTTA....................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 31 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTTGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTTGTAGTATAAT........................................................................ 15 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGCTTTTTATTGTTGTAGTATAAT........................................................................ 24 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAATAGTATTTAC...................................................................................................... 29 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGGAGTATTTA....................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTTGTGAAATCGAAAGTA.............................................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGCTTTTTATTGTTGTAGTATA.......................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0
.......ACGAATGTATCAACCCCATATCTATCT........................................................................................................................................................................................................................ 27 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTTC...................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAATCGAAAGTAG............................................................................................................. 15 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGAAAGTAGTATTTACTGTCTCTGC............................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGAA.............................................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTTTTTATTGTTGTAGTATAAT........................................................................ 22 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................AGTATTTACTGTCTCTGCTTTTT........................................................................................ 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...................................AAAATAGGTTAGCCGTATGGACACTT............................................................................................................................................................................................. 26 2 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAATTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCTTGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATCGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATTGTTGT................................................................................ 23 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCTAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAATCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTTTTTATTGTTGTAGTATAATT....................................................................... 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGGAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTATTTAA...................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATGGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...............ATCAACCCCATATCTATCTAAAAAT.................................................................................................................................................................................................................. 25 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................TAAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 30 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCTAAAGTA.............................................................................................................. 21 1 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................AAAGTCGTGAAAACGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATAGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTCAC...................................................................................................... 29 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTGAC...................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGAAAGTAGTATTTACTGTC.................................................................................................. 20 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0
.......................................................................................................................AAATTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGT............................................................................. 20 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CAGCTTTTTATTGTTGTAGTATAAT........................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTTGTATTTA....................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACTGTCTCTGCTTTTTATTGTT.................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................AAAGTAGTATTTACTGTCTCTG.............................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................TGTTTACATAAAGTCGTG.......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTCAA......................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGAGTCGTGAAGTCGAAAGTAG............................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCCAAAGTA.............................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTAGTTA....................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................TATCTATCTAAAAATAGGTTAGCCGTAT..................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GGTCTCTGCTTTTTATTG.................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................AAAGCCGTGAAATCGAAAGT............................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................GAAATCGAAAGTAGTATTGA....................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGCAGTATTTAC...................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCTTGAAATCGAAAGTAGTATTT........................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................ATCTATCTAAAAATAGGTTAGCCGTAT..................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTGTTTA....................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGAAAGTAGTATTTACTG.................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAGTAGTATTTACTGTCTCTG.............................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................AGGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGTCGTGAAATCGAAAGTAGTATCTA....................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTA.............................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAAGTAGTGAAATCGAAAGTAGTATTTA....................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTATTTAG...................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAACTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GAAAGTAGTATTTACTGTCTCTG.............................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTAGTATTTACTGTCT................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTAGTATTTACTGT................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....TTACGAATGTATCAACCCCATATCTATCT........................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................TAAAAATAGGTTAGCCG........................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AATCGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTTGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAATCTAAAGTAGTATTTACTGTCTCTG.............................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGAGTCGTGAAATCGAAAGTAGTATT......................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......ACGAATGTATCAACCCCATATCTATCTAAAA.................................................................................................................................................................................................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGGAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTTCTCTGCTTTTTATTGTGGTAGTA............................................................................ 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTCTTT........................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................AGAAATCGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....TTACGAATGTATCAACCCCATATCTAT.......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAACTCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTGATGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGGTAAATCTAAAGTAGTATTTA....................................................................................................... 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTCAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TAAAGTCGCGAAATCGAAAGTGGTATTTA....................................................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................AGAAAGTCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGCTTTTTATTGTTGTAGTA............................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................TCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................AAAAGTCGTGAAATCGAAAGTAGTATTTAT...................................................................................................... 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGGAGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTATTATTTA....................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAG............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTCGTATTT........................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAATTCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATTGTT.................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTGTTGT....................................................................................................... 28 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTTTTTCTTGTTGTAGTATAAT........................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATTGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATGGA....................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAATATTTA....................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGGGAAATCGAAAGTAGTATT......................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCCAAAGTAGTATT......................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTCTCTGCTTTTTATTGTAGTACAAT........................................................................... 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AAAGTCGTGAAATCGGAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TAAAAGTCGTGAAATCGAAAGTAGTATT......................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGCCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGCTGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TAAAATCGAAAGTAGTATTTA....................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGCTTTTTATTGTCGTAGTATA.......................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTAGTATTTACTGTCTC................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................AAAGTCGTGAGATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................AAGTAGTATTTACTGTCTCTGCTTTT......................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................GGTTAGCCGTATGGACACTT............................................................................................................................................................................................. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................AAAGGCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCATGAAATCGAAAGTA.............................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCGAAAGTAGTATTTAC...................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATC......................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAAGTCGTGAAATCGAAAGTAGTATTAA....................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTATTGTTGTAGTAT........................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGGGAAATCGAAAGTAGTATTT........................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................GAGTCGTGAAATCGAAAGTAGTAT.......................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAATCGAAAGTAGTATTTACTGTCTCTG.............................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTAT.......................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................ATGCTTTTTATTGTTGTAGTATAAT........................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................AAAGTAGTATTTACTGTCTCTGCTT........................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTAAAATCGAAAGTAGT............................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTGATGAAATCGAAAGTAGTATTTA....................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTTAAAACGAAAGTAGTATTTA....................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGCTTTTTATTGTTGTAGTATAAT........................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........CGAATGTATCAACCCCATATCTATCT........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AATGTCGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TATTTACTGTCTCTGCTTTT......................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................TCTGCTTTTTATTGTTGTAGTATA.......................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................AAAGGCGTGAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATTGTTG................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................TCGTGAAATCGAAAGTA.............................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGTCTCTGCTTTTTATTGTTGTAGT............................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAATGTAGTATTTA....................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTATTT........................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCTTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTGAAATCGAAAGTAGTAT.......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGCGAAATCGAAAGTAGTATTTT....................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAATCGAAAGTAGTA........................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTAAAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGTAATCGAAAGTAGTATTTG....................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTATTTTA......................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTACTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................TATCTATCTAAAAATAGGTTAGCCGT....................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTC....................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTGGTGAAATCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTACTGTCTCTGCTTTTTATT..................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTAC....................................................................................................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTATTATTTAC...................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAATCGAAAGTAGTAT.......................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTAGTATTTACTGTCTCTGCTTTTTAT...................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................ACTGTCTCTGCTTTTTATTGTTGTAGTATAATT....................................................................... 33 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTGAAATCGAAAGTAGCATTT........................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TACGTTGTTAAAGGAAAAAG.............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAAGCGAAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAAGTCGTGAAATCGAAAGTA.............................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCTTTTTATTGTTGTAGTACAAT........................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................CTAAAAATAGGTTAGCCGTATGGACACTT............................................................................................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TACTGTCTCTGCTTTTTATTGTT.................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGCTTTTTATTGTTGTAGTATAAG........................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................TAAAAATAGGTTAGCCGTATGGACAC............................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATTGTTGTAGTATAATT....................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAGATCGAAAGTAGTATTTAC...................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAATCGAAAGTAGTATTTACTG.................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................AAAATAGGTTAGCCGTATGGACACTTAA........................................................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGCCTTTTATTGTTGTAGTATAAT........................................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................AAGTAGTATTTACTGTCTC................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGGAATCGAAAGTAGTATTTAC...................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGCTTTTTATTGTTGTAGTATA.......................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................TATTGTTGTAGTATAATT....................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTCTCTGCTTTTTATTGTTGTA............................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTAGTA........................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTACTTAC...................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTCTCTGCTTTTTATTGTTGTAGTA............................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAATTAGTATT......................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AAAAGTCGTGAAATCGAAAGTAGTATTTACT..................................................................................................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGTCGTGAAATCGAAAGTAGTATT......................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........TAAGGTATCAACCCCATATC............................................................................................................................................................................................................................. 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TAAGTCGTGAAATCGAAAGCAGTATTTA....................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AATACGTTGTTAAAGGAAAAAGAT............................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTTTTG........................................................................................................ 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAAT............................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTCGTGAAATCGAAAGTA.............................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAAGTAGTATTTAG...................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGAAATCGAAAGTAGTATTAA....................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTACTGTCTCTGCTTTTTATTGTTG................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTCTCTGCTTTTTATTGTTGTAGTATA.......................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGCAAGTAGTATTTA....................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AATCGAAAGTAGTATTTA....................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AAAAGTCGTGAAATCGAAAGT............................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGTCGTGAAATCGAAACTA.............................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:40204-40453 + dsi_21114 TTTGTAA--TGCTTACATAGTTGGGGTATAGAT--AGATT-TT-------T---------ATCCAATCGGCA---TACCTGCAAAATA-T--------------CAAAGTTTTATAAG---------TA--AA--ATTATT----TCATTTAAAA-ATTATATTTAAACAAATGTATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAAAA--TGCAATAATATATGCAACAATTT---CCTTT--------TTCTATATTTTGCAACGTTCTTT------------------------AAA--------------------------------------------ACCAAGA
droSec2 scaffold_52:29936-30178 + AAAGTAA--AGCTCTCATAGTTGGGGTATAGAT--AGATT--T-------T---------ATCCAATCGGCA---TACCTGCAAAT-A-T--------------CA-AGTT-TATAAG---------TA---A--ATTATT----TCATTTAAAA---TATATTTAAACAAATGTATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAGAA--TGCAATAATATATACAACAATTT---CCTTT--------TTCTATATCTTGCAACGTTCTTG------------------------AAA--------------------------------------------ACTAAGA
dm3 chr4:86094-86343 + TTTGACA--TGCTTACATAGTTGGGGTATATAT--TGATT-TT-------T---------ATTCAATCGACA---TACCTGCGAAAAA-G--------------CAAAGTTTTATAAG---------TA--AA--ATTCTT----TTATTTAAAA-ATTATATTTAAACAAATGAATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAAAG--TGCAATAATATATGCAACAATTT---CCTTC--------TTATAAATCTTATAAAGTTCTTT------------------------AAA--------------------------------------------ACAAATA
droEre2 scaffold_4512:1234536-1234770 - TTTGTCG--TGCATTCATAATT----------T--AGATA-TT-------T---------AACCAATCGACA---AACCTGCAAAG-ACAAATA-CATAGA---CATAGTTGTATAAA---------TA--AA--ATCATT----TAATTTAAAACATGATATTTGAGAAACGGTATTTCAGCACTTTAGTTTTCATCATA-AAATGACAGAGACGAAAAATAACA-----TCATGT--TAATTTCTCA--AA----------AATAATATATGCAACTATTA---CCGATTTGTCAATTTCTAAATCTT--------------------------------------------------------------------------------------AAAA
droYak3 4:53436-53706 + TTTGAAA--TG------------TAGTATACAT--AGACT-TT-------T---------T----ACCGACA---AACCTACAAAG-ACAAACA-CATAAA---CATAGTTATAAAAA---------TG--AA--AGAATT----TAATTTAAAGCAACATATTTCAGAAAAGGTATTTCAGCACTTTAGTTTTCATCATG-AAATGACAGAGACGAAAAATAACA--TCAT---AA--TAATTTCTCA--AA----------TATAATATATGCAACTATTT---CCGATTTATCCATTTCTAAGTCTTAAAAAGTTACTTTTATTTGCAAATAAGATTTGCGAAAAA--------------------------------------------ACATAAA
droEug1 scf7180000406964:34479-34693 + T---------GCTTACTTAATCGGAGCATACCA--CTGTT-TCTACCTCTT---------AACCAGTCAACC---AGTCTGCAAAAAA-AAAA--------------AATT-ATTAGGTA---------CACAATATTCAAA---------ATATCT--CCAGTTGATAATAATTTTTTCAGCACTTATTTTTTCATCATT-CATTGACAGAGACGAAAAATAACA--TCATCATATT--TG----GGG--AAAATAATTTACAATAA---------------AAATATAT--------AGATAA-------------------------------------------------------------------------------------------ATTT
droBia1 scf7180000302087:318714-318956 - ATATTT-----------------------------GGGTT-AC-------T---------ATCTATACTGTAAAGTACCTGTAAAG-AAAAAAA-TA----TAGCATA---G-----GTTAAACACATA--AA--ATCAATA---------ATGGCAAGATATCAGTAAACATTTTTATCAGTACTTGGGAAGTCATCAAA-TAATGGCAGAGACGAAAAATAACATATCATCATATTTTAACTTAGCA--AA----------AATAAAATATGCAACTTTTG---TTTAA----------GCGCAATATGTGCA-------------------------------ATAAATGAAAACG---------------------------TTTCTAAATAACAA
droTak1 scf7180000414546:21573-21814 - TTAATTTATTGCTTACATTATAGGGGTTTACATCCCGGTTCGTTACCCCTTTTTCTTGTGTATCAATCGATA---AACCTGCAAAAGA-AAGAAGAATA--AACCATT---G-----GTAAAAAATTTATTTA-TA-TTATA---------AACACTCGAAAACTGGGAAAATATTTTTCAGTATTTCAGTTATCATCATA-TAATGACAGAGACGAAAAATAACATATCATCACAT--TAATTTGGCG--AA----------AATAATATATGCAAAACT----------------------------------------------------------------------------------------------------------------------T
droEle1 scf7180000490971:363726-363973 - A----------------------------------------------------------------GTCGGCA----ACCTGCAAAT-ACAAAAA----AGACGGCGTT---G-----TTTGAATATA--TTTAATATCCATA---------ATCATT-TTTATCTGTGAAA-AAGATTTCAGGACTAGAATTTTCATCATA-TAATAACAGAGACGAAAAATAACATATCATCACAC--TAATCTCGCT--AA----------AATAATATATGCAACATATT---TTTGT--------TAATATAACATGCAAA-------------------------------ATCAAATAAAATGCATTTTAAATATTTAATTAATTGATTTTTTCTA-AATAATA
droAna3 scaffold_13010:655717-655912 - AAAATAA------------------------------------------------------------------------------------AA--------------AATT-TTTAGGGA---------GATGAAATTAAATTTTTCTTG-CAAA-ATTGTATTGTAGCGTACTGTATTCAGCTACATGGTATTCATCAAAAAAAAGACAGAGACGAAAAATAAAT--TCATCAAATC--AAACTTTTTTTTTTGTAA--CTCATTAATTAAAGCGACAATCGGAATATTT--------TTCTGTATTTT------------------------------------ATT--------------------------------------------GCATTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTGTAA--TGCTTACATAGTTGGGGTATAGAT--AGATT-TT-------T---------ATCCAATCGGCA---TACCTGCAAAATA-T--------------CAAAGTTTTATAAG---------TA--AA--ATTATT----TCATTTAAAA-ATTATATTTAAACAAATGTATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAAAA--TGCAATAATATATGCAACAATTT---CCTTT--------TTCTATATTTTGCAACGTTCTTT------------------------AAA--------------------------------------------ACCAAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................T---------ATCCAATCGGCA---TACCTGCAAAATA-.......................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................GACGAAAAATAACA--A...........................................................................................................................................................................1521.00200000000101000000
droSec2
AAAGTAA--AGCTCTCATAGTTGGGGTATAGAT--AGATT--T-------T---------ATCCAATCGGCA---TACCTGCAAAT-A-T--------------CA-AGTT-TATAAG---------TA---A--ATTATT----TCATTTAAAA---TATATTTAAACAAATGTATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAGAA--TGCAATAATATATACAACAATTT---CCTTT--------TTCTATATCTTGCAACGTTCTTG------------------------AAA--------------------------------------------ACTAAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTTGACA--TGCTTACATAGTTGGGGTATATAT--TGATT-TT-------T---------ATTCAATCGACA---TACCTGCGAAAAA-G--------------CAAAGTTTTATAAG---------TA--AA--ATTCTT----TTATTTAAAA-ATTATATTTAAACAAATGAATTTCAGCACTTTAGCTTTCATCATA--AATGACAGAGACGAAAAATAACA--ACATCATATT--AAATA------ATAAAAG--TGCAATAATATATGCAACAATTT---CCTTC--------TTATAAATCTTATAAAGTTCTTT------------------------AAA--------------------------------------------ACAAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................TATTTAAACAAATGAATTT.............................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAGCTTTCATCATA--AATGAC...............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATTCAATCGACA---TACCTGCGA............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A--TGCTTACATAGTTGGGGTA....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................TT--AAATA------ATAAAAG--TGCAATA.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........GCTTACATAGTTGGGGTA....................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGAGACGAAAAATAACA--A...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATCGACA---TACCTGCGAAAAA-G--------------........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TTCATCATA--AATGACAGAGA..........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TGAATTTCAGCACTTTAGCTT...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................CGAAAAATAACA--ACATCATAT...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ATGACAGAGACGAAAAGA..................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................AGAGACGAAAAATAACA--AT..........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................GACGAAAAATAACA--ACAC........................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTGTCG--TGCATTCATAATT----------T--AGATA-TT-------T---------AACCAATCGACA---AACCTGCAAAG-ACAAATA-CATAGA---CATAGTTGTATAAA---------TA--AA--ATCATT----TAATTTAAAACATGATATTTGAGAAACGGTATTTCAGCACTTTAGTTTTCATCATA-AAATGACAGAGACGAAAAATAACA-----TCATGT--TAATTTCTCA--AA----------AATAATATATGCAACTATTA---CCGATTTGTCAATTTCTAAATCTT--------------------------------------------------------------------------------------AAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTTGAAA--TG------------TAGTATACAT--AGACT-TT-------T---------T----ACCGACA---AACCTACAAAG-ACAAACA-CATAAA---CATAGTTATAAAAA---------TG--AA--AGAATT----TAATTTAAAGCAACATATTTCAGAAAAGGTATTTCAGCACTTTAGTTTTCATCATG-AAATGACAGAGACGAAAAATAACA--TCAT---AA--TAATTTCTCA--AA----------TATAATATATGCAACTATTT---CCGATTTATCCATTTCTAAGTCTTAAAAAGTTACTTTTATTTGCAAATAAGATTTGCGAAAAA--------------------------------------------ACATAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
T---------GCTTACTTAATCGGAGCATACCA--CTGTT-TCTACCTCTT---------AACCAGTCAACC---AGTCTGCAAAAAA-AAAA--------------AATT-ATTAGGTA---------CACAATATTCAAA---------ATATCT--CCAGTTGATAATAATTTTTTCAGCACTTATTTTTTCATCATT-CATTGACAGAGACGAAAAATAACA--TCATCATATT--TG----GGG--AAAATAATTTACAATAA---------------AAATATAT--------AGATAA-------------------------------------------------------------------------------------------ATTTSizeHit CountTotal NormTotal
No Reads
droBia1
ATATTT-----------------------------GGGTT-AC-------T---------ATCTATACTGTAAAGTACCTGTAAAG-AAAAAAA-TA----TAGCATA---G-----GTTAAACACATA--AA--ATCAATA---------ATGGCAAGATATCAGTAAACATTTTTATCAGTACTTGGGAAGTCATCAAA-TAATGGCAGAGACGAAAAATAACATATCATCATATTTTAACTTAGCA--AA----------AATAAAATATGCAACTTTTG---TTTAA----------GCGCAATATGTGCA-------------------------------ATAAATGAAAACG---------------------------TTTCTAAATAACAASizeHit CountTotal NormTotal
No Reads
droTak1
TTAATTTATTGCTTACATTATAGGGGTTTACATCCCGGTTCGTTACCCCTTTTTCTTGTGTATCAATCGATA---AACCTGCAAAAGA-AAGAAGAATA--AACCATT---G-----GTAAAAAATTTATTTA-TA-TTATA---------AACACTCGAAAACTGGGAAAATATTTTTCAGTATTTCAGTTATCATCATA-TAATGACAGAGACGAAAAATAACATATCATCACAT--TAATTTGGCG--AA----------AATAATATATGCAAAACT----------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
A----------------------------------------------------------------GTCGGCA----ACCTGCAAAT-ACAAAAA----AGACGGCGTT---G-----TTTGAATATA--TTTAATATCCATA---------ATCATT-TTTATCTGTGAAA-AAGATTTCAGGACTAGAATTTTCATCATA-TAATAACAGAGACGAAAAATAACATATCATCACAC--TAATCTCGCT--AA----------AATAATATATGCAACATATT---TTTGT--------TAATATAACATGCAAA-------------------------------ATCAAATAAAATGCATTTTAAATATTTAATTAATTGATTTTTTCTA-AATAATASizeHit CountTotal NormTotal
No Reads
droAna3
AAAATAA------------------------------------------------------------------------------------AA--------------AATT-TTTAGGGA---------GATGAAATTAAATTTTTCTTG-CAAA-ATTGTATTGTAGCGTACTGTATTCAGCTACATGGTATTCATCAAAAAAAAGACAGAGACGAAAAATAAAT--TCATCAAATC--AAACTTTTTTTTTTGTAA--CTCATTAATTAAAGCGACAATCGGAATATTT--------TTCTGTATTTT------------------------------------ATT--------------------------------------------GCATTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads

Generated: 05/19/2015 at 05:41 AM