ID:

dsi_21113

 Coordinate:

2r:4794654-4794803 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.6 -32.5 -32.4

Flybase annnotation

CDS [2r_4794804_4794908_+]; exon [2r_4794804_4794908_+]; intron [2r_4793645_4794803_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTAGTCGTAATTAGCGCCAATTATTGCGATTATGACAAAGCTGGAATTAATCAGAGAGTGCTGATAACGCAACCCCCATTCAAAATTTCGAAATGACCCTGCACAATGACGCACTGAACCGCTATCAGGGTCCGCATTTTGGGTACAACCAGGGGGAACTATTGCTCCAGAGTAACTAATTGTGATTGGAACACTTGCAGAAACCGCGATGGGGCAACCTCCTGCTGCTTGTGGCCCTGGCAACCACATT
**************************************************.....((((((((((..((((((((((.........(((((((((((((((....(((.((........)).))))))))))...))))))))........))))).....(((((....)))))....))))))))))..)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 M025
embryo
 SRR902009
testis
.........................................................GTGCTGATAACGCGA.................................................................................................................................................................................. 15 1 20 4.65 93 53 27 10 0 3 0 0 0 0
...........................................................................................................................................................................................................................TCCTGCTGCTTGTGGCCCTGGC......... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTGTGATTGGAACA......................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................CGCAGAAACAGCGATGGGG.................................... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................ACCAGGGCGAACTTTTGCT.................................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TGTGATTGGAAGACT....................................................... 15 1 12 0.17 2 2 0 0 0 0 0 0 0 0
...................................................CAGAAAGTGATGATGACGC.................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0
...................................................CAGAGAGTGATGTTGACGC.................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0
...................................AAAGACTGGAATTAATCAGA................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0
.......................................ACTGGAATTAAACAGAGACT............................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 1
.................................................ATCAGGCTGTGCTGATAA....................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...................................................................................................TGCACGATGACGCACC....................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................AGAGAGTGCTGATCCC...................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AATCAGCATTAATCGCGGTTAATAACGCTAATACTGTTTCGACCTTAATTAGTCTCTCACGACTATTGCGTTGGGGGTAAGTTTTAAAGCTTTACTGGGACGTGTTACTGCGTGACTTGGCGATAGTCCCAGGCGTAAAACCCATGTTGGTCCCCCTTGATAACGAGGTCTCATTGATTAACACTAACCTTGTGAACGTCTTTGGCGCTACCCCGTTGGAGGACGACGAACACCGGGACCGTTGGTGTAA
**************************************************.....((((((((((..((((((((((.........(((((((((((((((....(((.((........)).))))))))))...))))))))........))))).....(((((....)))))....))))))))))..)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................TCGCGGTAGTCCCAGGCGTA................................................................................................................. 20 2 2 0.50 1 1 0 0 0
...................................................................................................ACGTGCTACTGCGTG........................................................................................................................................ 15 1 6 0.17 1 1 0 0 0
..............................................................................................................................TCCCAGGCGTGACAGCCAT......................................................................................................... 19 3 7 0.14 1 1 0 0 0
.........................................................................................................................................................................................................................GGAGGATGACGAACA.................. 15 1 12 0.08 1 0 1 0 0
......................................................................TTGGGGGCAAGTTTTAAG.................................................................................................................................................................. 18 2 15 0.07 1 0 0 1 0
.......................................................................................................................................................................................CTAAGCTTGTGAACGTA.................................................. 17 2 19 0.05 1 0 0 0 1
........................................................................................................................CGATAGGCCCGGTCGTAAA............................................................................................................... 19 3 20 0.05 1 1 0 0 0

Generated: 04/23/2015 at 04:55 AM