ID:

dsi_21105

 Coordinate:

2r:5594562-5594627 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.2 -3.0

Flybase annnotation

exon [2r_5594235_5594561_+]; CDS [2r_5594235_5594561_+]; CDS [2r_5594628_5594699_+]; exon [2r_5594628_5594699_+]; intron [2r_5594562_5594627_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
CTGTGCTGGAGGAGCTGAAGAACCGCTGCCTGGGCGCGACCAATGATCCGGTAAGTGTATTAATAAATGATCCATAAAGAGAGCCAACTTTATTCTATATCTGTTTGAACTTTAAGCGCACAAAACGAAAGTTTGTGGATGTTGTCAAGAGGCTCGAAAATCTCTA
**************************************************..((((.....((((.(((....((((((........))))))....))).))))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
...............TGAAGAACCGCTGCCTGGGCGC................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTGGATGTTGTCAAGAGGCT............ 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................TATTCTATATCTGTTTGAACTTTA.................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATGTTGTCAAGAGGCTC........... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGATGTTGTCAAGAGGCTCGAAAAT..... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......GGAGGAGCTGAAGAACCG............................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TTTGTCGATGTTGTCAAGAGGCTCGA......... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................AAAACGAAAGTTTGTGGATGTT....................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.TGTGCTGGAGGAGCTGAAGAACCGC............................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................CCTGGGCGCGATCAATGATCCGC................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................TTATTCTATATCTGTTTGAACTTTAAGAA................................................ 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...TGCTGGAGGAGCTGAAGAACCGCTGT......................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................GAAGAACCGCTGCCTGGGCGCGACC............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTGGATGTTGTCAAGAGGCTCCAAAA...... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........GAGGAGCTGAAGAACCGCTGCCTGGGCGC................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................GAAGAACCGCTGCCTGGGCGC................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGATGTTGTCAAGAGGCTCGAAAA...... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................AAGTTTGTGGATGTTGTCAAGAGGC............. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TATATCTGTTTGAACTTTAAGAA................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTGGAAGTTGACAAGAGGAT............ 20 3 7 0.29 2 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................GAACGAAAGTTTGGGGAT.......................... 18 2 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCGATGTTGTCAAGAG............... 16 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................AACGAAAGTTAGTGGATC......................... 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................ATATATCTGATTGAACTTT..................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................GAACGAAAGTTAGTGGAT.......................... 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................AAAGTTTGTTGTTGTTGTCAAT................. 22 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GAACGAAAGTTAGGGGATG......................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
..............CTGAAGAATCGGTGCCTG...................................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.........AGGACCTGAAGAACC.............................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................TGAATAAATGATCCAAAA......................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTTTATTGTATATCTGTTGT........................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TTTATTCTATATCGGTA............................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACACGACCTCCTCGACTTCTTGGCGACGGACCCGCGCTGGTTACTAGGCCATTCACATAATTATTTACTAGGTATTTCTCTCGGTTGAAATAAGATATAGACAAACTTGAAATTCGCGTGTTTTGCTTTCAAACACCTACAACAGTTCTCCGAGCTTTTAGAGAT
**************************************************..((((.....((((.(((....((((((........))))))....))).))))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................GTTTTGCTTTCAAACAGCTACAACA..................... 25 1 1 1.00 1 1 0 0 0 0
......ACCTCCTCGACTTCTTTGCGT........................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0
..........................ACGGACCACCGCTGGTTA.......................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
.................................................................................................................................TCAAACACCTAGATCAGT................... 18 2 7 0.14 1 0 0 0 1 0
............................................................................................................................................CAACAGGTCCGCGAGCTTTTA..... 21 3 9 0.11 1 0 0 1 0 0
.........................TACGGACCCCCGCTGGAT........................................................................................................................... 18 3 19 0.05 1 1 0 0 0 0
...............................CCCGCGCTGGTTACAGAG..................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
.......CGTCCTCGTCTTCTTGGCTA........................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 06:12 PM