dsi_21090

GCCCCTGCTGAACAACGGAGTTAGTGGCGTCGGAAGCGGCAGCGCGAAAGGTAAGCAAGCGGTATTGCCAGCGACGCTTGATGAGGATGCGTCCATTGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCACGCCCGCGCCAACGCTAACGCCAGCGCCAGCGGCAATGCCAGCACCCTGCCGCCTCCCTCGAAACCACCGCGCATTCCCCTGTCGCAGGTGGACGAGCAGCCGGCT **************************************************...........(((.((.(((((((...........))))).......)))).)))********************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
....................TTAGTGGCGTCGGAAGCGGC..................................................................................................................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0
....................................................AAGCAAGCGGTATTGCCAGC..................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
................................................................................ATGAGGATGCGTCCATTGACGCGGAGAT..............................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................ATTGACGCGGAGATGGAACAGCT.....................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
................................................................TTGCCAGCGACGCTCGATGAGGAT..................................................................................................................................................................	24	1	1	1.00	1	0	0	0	1	0	0
.................................................................TGCCAGCGACGCTTGATGAGGAT..................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
...............................................................................GATGAGGATGCGTCCA...........................................................................................................................................................	16	0	1	1.00	1	0	0	1	0	0	0
.............AACGGAGTTAGCGGCGTCGGAAGCGGCA.................................................................................................................................................................................................................	28	1	1	1.00	1	0	0	0	1	0	0
..............................................................................................ATTGACGCGGAGATGGAACAG.......................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0
..........................................................................................GTCCATTGACGCGGAGATGGAACAGCTT....................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
......................AGCGGCGTCGGAAGCGG...................................................................................................................................................................................................................	17	1	4	0.25	1	0	0	1	0	0	0
.........................................GCGCGAAAGGTCAGC..................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	0	1	0
............CTTCGGAGTTAGTGGCG.............................................................................................................................................................................................................................	17	2	12	0.08	1	0	0	1	0	0	0
.........................................................................................................................................................................................................CTCGGTACCACCGCGC.................................	16	2	16	0.06	1	0	0	0	0	1	0
............CTTCGGAGTTAGTGGC..............................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................CAATACGAGCACCCTG.........................................................	16	2	20	0.05	1	0	0	0	0	0	1

CGGGGACGACTTGTTGCCTCAATCACCGCAGCCTTCGCCGTCGCGCTTTCCATTCGTTCGCCATAACGGTCGCTGCGAACTACTCCTACGCAGGTAACTGCGCCTCTACCTTGTCGAACTCGATCTAAAGTCACAAGCACGGGTGCGGGCGCGGTTGCGATTGCGGTCGCGGTCGCCGTTACGGTCGTGGGACGGCGGAGGGAGCTTTGGTGGCGCGTAAGGGGACAGCGTCCACCTGCTCGTCGGCCGA ********************************************************************************************************************************************...........(((.((.(((((((...........))))).......)))).)))**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
...................................................................................................................................................................................................CGGAGTGAGCTTTGATCGC....................................	19	3	12	128.17	1538	1130	379	29	0	0
..................................................................................................................................................................................................GCGGAGTGAGCTTTGATCGC....................................	20	3	2	4.50	9	4	3	2	0	0
...................................................................................................................................................................................................CGGAGGGAGCTTTGATCGC....................................	19	2	2	0.50	1	1	0	0	0	0
...................................................................................................................................................................................................CGGAGGGGGCTTTGATCGC....................................	19	3	15	0.33	5	4	0	1	0	0
.................................................................................................................................................................................................................................CAGCGTCCCCTTGCTGGTCG.....	20	3	5	0.20	1	0	1	0	0	0
....................................................................................................................................................................................................GGAGTGAGCTTTGATCGC....................................	18	3	20	0.15	3	0	2	0	0	1
..................................................................................................................................................................................................GCGGAGTGAGCTTTGATCG.....................................	19	3	9	0.11	1	1	0	0	0	0
...................................................................................................................................................................................................CGGAGGTAGCTTTGATCGC....................................	19	3	18	0.11	2	1	1	0	0	0
.........................................CGCGCTTTCCAGTCG..................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	1	0
...........................................................................................................................................................TGAGATTGCGGTCCCGGA.............................................................................	18	3	20	0.10	2	0	0	0	2	0
........................................................................CTGCGAACTACTACT...................................................................................................................................................................	15	1	19	0.05	1	0	0	0	1	0
............................................................................................................................................GGGTCCGAGCGCGGCTGC............................................................................................	18	3	20	0.05	1	0	0	1	0	0
........................ACCGCAGCCTGTGGCGTCG...............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	node_39788:28336-28585 -	dsi_21090	GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTATTGCCAGCGACGCTTGATGAGGAT---GCG---------T------CCATTGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCCAACGCTAACGCCAGCGCCAGCG---------------------G------------CAATGC------CAGCACCCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------
droSec2	scaffold_8:837078-837327 -		GCCCCTGCTGAACAACGGAG------TTAG---TGGCT----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTATTGCCAGCGACGCTCGATGAGGAT---GCG---------T------CCATTGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCCAACGCTAACGCCAGCGCCAGCG---------------------G------------CAATGC------CAGCAACCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------
dm3	chrX:18533297-18533546 -		GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------T------CCATCGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCAAACGCTAACGCCAGCGCCAGCG---------------------G------------AAATGC------CAGCACCCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------
droEre2	scaffold_4690:8842850-8843108 -		GCCCCTGCTGAACAACGGAG---GAGTTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTTCGTGCCCA-CGCCCGCACCAACGCCAACGCCAGCGCCAGCG------C---C------AGTGG------------AAGTGC------CAGCAACGT---------------GCCGCCTCCCTCGAAACCACCGCGCATCCCCC------------------TTTCGCAGGTGGAG------------GAGCAGC------------------------CTGCT-------------------
droYak3	X:17159410-17159668 -		GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGATTTTGCCAGCGACGCTCGATGAGGATGATGCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTTCGTGCCCA-CGCTCGCACCAACGCCAGCGCCAGCACCAGCG------C---C------AGTGG------------AAGTGC------CAGCATTCA---------------GCCGCCTCCCTCGAAACCGCCGCGCATCCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------
droEug1	scf7180000409528:743832-744069 -		GCCCCTGCTGAGCAACGGAC------TGGG---CGGCG----------------------------CT---GGAAGCGGCAGCGGGAAA------------------GGTAAGCAA------GCGGTTATGCCAGCAACGCTCGATGAGGAT---GCG---------C------CCATCGATGCGGATATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCCCGCGCCAACGCCAGCG---------------------------------G------------AAATGC------CAGCACCCT---------------GCCGCCACCCTCGAAGCCGCCGCGCAATCCCT------------------TGTCACAGGCGGAC------------GAGCAGC------------------------CGGCT-------------------
droBia1	scf7180000302432:668641-668881 +		GCCCCTGCTGAACAACGGAC------TGGC---CGGCG----------------------------TC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-CGCCCGCGCCAACGCCAGCG---------------------------------------GAAGCGGAAGCGC------CAGCACCCT---------------GCCGCCCCCCTCGAAGCCGCCGCGCATCCCTC------------------TGTCGCAG---GAC------------GAGCAGC------------------------CGGCT-------------------
droTak1	scf7180000414301:76182-76410 +		GCCTCTGCTGAGCAATGGAG------GAGG---AGTAG----------------------------CA---GGCGGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGATTTTGCCAGTGACGCTCGATGAGGATGATGCG---------C------CCATCGACGCGGATATGGAACAGCTTGAGCTCGATTTCAGTGTACGTGCCCA-CGCCCGCAGCAGCAACAGCA---------------------------------------------------G------CAGCACCCT---------------GCCGCCACCCTCGAAGCCGCCGCGCATTCCCC------------------TGGAGCAG------------------GAGCAGC------------------------CGGTG-------------------
droEle1	scf7180000491006:793172-793469 -		GCCCCTGCTGAGCAATGGAG------TGG-------CACTTGGAGTGGCCGGAAGCGGAAGCGGAAAC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCAACGCTCGACGAGGAT---GCG---------T------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCCCGCGCTAATGCTAATGCCAATGCCAATG---GTAATGGTAATGGCAAT------GGCAGCGGTAGCGC------CAGCACCCT---------------GCCGCCTCCCTCGAAGCCACCTCGCATACCGC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------
droRho1	scf7180000779985:1280776-1281058 -		GCCCCTGCTGAGCAACGGAG------TGGG---TGGTC-------TCGCCGGAAACGGAGTCGGAATC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-CGCCCGCGCCAATGCCAGCGCAAATGCTAGCG------C---A------------GGCGGAAGCGGAAGCGCCAGCACCAGCACTGT---------------GCCGCCTCCCTCGAAGCCGCCGCGTATCCCGC------------------TG------GCGGAT------------GAGCAGC------------------------AGGTT-------------------
droFic1	scf7180000453829:195290-195563 +		GCCCCTGCTGAACAATGGAG------TTGG---CGTCA-------TCGCCGGA------------GCA---GGCAGCGGCAGCGGGAAA------------------GGTAAGCCAGCA---GCGGTTTTGCCAGCTACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCG-CGTGC---CCAATGCCAGCGGAAATGG---------------A------AGTGGAAGTGGAAGCGGAAGCGGGAG---TAGCACCCT---------------GCCAGCTCCCTCGAAGCCACCGCGTATTCCCG------------------CATCGCTGGCGGAT------------GAGCAGC------------------------CAGCT-------------------
droKik1	scf7180000302621:480917-481162 -		GCCCTTGCTGAGCAACGGCAACGGCGTGGT---CA-------------------------------TCGGTGGCGGCGGCAGCGGGAAA------------------GGTAAGCCA------ACGGTTTTACCAGCAACCCTCGATGAGGAT---GCG---------C------CCATCGATGCAGAGATGGAACAGCTTGAGATCGATTTCAGTGTACGTGCCCG-CGCCAGCA------------------------------------------------------------GCAG------CAGCACCCT---------------GCCGCCTCCCTCGAAGCCGCCACGCATTCCCTCCTCGCCGTCGTCTTTGTCGTCGCAGGTGGAG------------CAGCAGG------------------------AGGC--------------------
droAna3	scaffold_13248:1699191-1699482 -		GCCCTTGCTGAACAACAACAACGGAGTGAG---CAGCG--------------------------------------CGGCGG--CCAAA------------------GGTAAGCCA------GCGGGTAGGCCAGCAACCCTCGATGAGGACGATGTG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCTCGTGCGAATTCCAGCGCAGTCGGAGGAGGAGGAGGTGGAGCTGGTATT------GGAGGTGGACTTGC------CAGTACTCT---------------CC---CACCATCAAAGCCACCGCGTATTCCGG------------------AA---CAGCTGGAG------------AGGGAGCGGGAGCGTGAAAGGGAGAAGG---AACGT-------------------
droBip1	scf7180000395958:111894-112160 +		ACCCTTGCTGAACAACAACAATGGCGT----------------------------------------G---AGCGGCGTGGGGGCCAAA------------------GGTAAGCCA------GCGGGTAGGCCAGCAACGCTCGATGAGGAT---ATG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCTCGTGCGAATTCCAGCGCAGTCGGTGGTG------GTGGTGCTGGAGGTGGAGGAGGAGTCGGAGGCGT------TAGTACA------------------CTGCCTCCATCGAAGCCGCCGCGTATTCCGG------------------AG---CAACTGGAG------------AGGGAAC-------------------------GGGA-------------------
dp5	XL_group3a:699523-699767 +		GCCCCTGCTGAGCAATGGCAATGGACTGGGCAATGGTG----TGGT------------------AATC---GGGAACGGC-GTGGGAAA-----GGTCCATCATGGAGGTAAGCCC------AACAAAAAGCCAGAGACGCTCGATGAAGAT---CCG---------C------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGCGCTC----------------------------------------------------------------------------------GCACCCT---------------ACCGCCTCCCTCGAAGCCGCCGCGCATCCCCC------------------AGCTCCAGCTGGAG------------GAGGAGA------------------------AGGACGAGCAGTA---------CC
droPer2	scaffold_39:247991-248225 +		GCCCCTGCTGAGCAATGGCAATGGACTGGGTAATGGTC----TGGC------------------AATC---GGGAACGGC-GTGGGAAA-----GGTCCATCATGGAGGTAAGCCC------AACAAAAAGCCAGAGACGCTCGATGAAGAT---CCG---------C------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGCGCTC----------------------------------------------------------------------------------GCACCCT---------------ACCGCCTCCCTCGAAGCCGCCGCGCATCCCCC------------------AGCTCCAGCTGGAG------------GAGGAGA------------------------AGGAC-------------------
droWil2	scf2_1100000004909:11132109-11132375 -		GCCATTGCTAAATAATGGAG------GAGG---AGGAA-------CAGCA----------------GC---CGCAGCCGCAGCCAAAA-----------TGAATGGAGGTAAGCCGGATGCAAGGACTTT---------GCATGATGACGAT---GAGGCCAAAATGCAGCTTGATAATGTAAAGGAGATGGCACAGCTTGAGCTAGACTTCAGTGTACGGGCACAACACCCACA--------------GTC----------------------------------GCAGCAGA----------------CGCCATCGCCACCGCAGCCGTCGCCTCCCTCAAAGCCGCCTAG------------------------------GCAAAAGGAA------------GAGCAGC------------------------TGCCG-----CTACCACCGACGCC
droVir3	scaffold_12970:5338933-5339147 -		GCCGCTGCTGAGCAACGGAA------ACGG---TGGTG-------------------------------------GTGGTGGCCCGAAGGGAAAA---CTCAACGGAGGTAAGCC---------CATAATGCAAGAGACACTCGATGAGGAT---------------C------CAATCGTTGCGGAGATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCGC----------------------------------------------------------------------------------GCACTCT---------------GCCACCTCCCTCAAAGCCGCCGCGCACCCCGC------------------AGACACAGCAAGAGCTGGAG------TCGGAAC--------------------------GCG-------------------
droMoj3	scaffold_6473:4920054-4920256 -		GCCGCTGCTGAGCAACGGAG------GCAG---CATTG----------------------------------------------CCAAGGGGAAA---CTCAACGGAGGTAAGCC---------CAAATTGCAAGAGACAGTCGATGAGGAT---------------C------CCATCGTTGCGGAGATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCAC----------------------------------------------------------------------------------GCACTCT---------------GCCACCTCCCTCAAAGCCGCCACGCACGCAGC------------------AGACACAGCAGGAGCTG---------GAGCTGT------------------------TGG---------------------
droGri2	scaffold_15203:9497545-9497785 +		GCCGCTGCTGATCAATGGCA------ATGG---TGGTG-------------------------------------------GCCCCAAGGGTAAA---CTGAACGGAGGTAAGCC---------CAAATTGCAAGAGACACTCGATGAGGATGCCAAA---------T------CGATCGTTGCCGAAATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCAC----------------------------------------------------------------------------------GCACTCT---------------GCCGCCTCCCTCGAAGCCGCCGCGCACCCCGT------------------CGTCGCCACAAGAGCTGCAAATGGAGCGTGAAC------GCGAGGGGGATGGTCAAGGTGAT-------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTATTGCCAGCGACGCTTGATGAGGAT---GCG---------T------CCATTGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCCAACGCTAACGCCAGCGCCAGCG---------------------G------------CAATGC------CAGCACCCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................TTAG---TGGCG----------------------------TC---GGAAGCGGC............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AAGCAA------GCGGTATTGCCAGC....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATGAGGAT---GCG---------T------CCATTGACGCGGAGAT..............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTGACGCGGAGATGGAACAGCT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGCCAGCGACGCTTGATGAGGAT---.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GATGAGGAT---GCG---------T------CCA...........................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTGACGCGGAGATGGAACAG.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G---------T------CCATTGACGCGGAGATGGAACAGCTT....................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCCCTGCTGAACAACGGAG------TTAG---TGGCT----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTATTGCCAGCGACGCTCGATGAGGAT---GCG---------T------CCATTGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCCAACGCTAACGCCAGCGCCAGCG---------------------G------------CAATGC------CAGCAACCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........ACAACGGAG------TTAG---TGGCT----------------------------TC---GGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................G------TTAG---TGGCT----------------------------TC---GGAAGCGGC............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...........................TAG---TGGCT----------------------------TC---GGAAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................GCATTCCCC------------------TGTCGCAGGTGGAC------------GAGC...................................................	27	1	1.00	1	0	0	0	1
........................................................................................................................................GACGCTCGATGAGGAT---GC...............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................G------TTAG---TGGCT----------------------------TC---GGAAGCGGCAGCG........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
......................................................................................................................................................................................GCGGAGATGGAACAGCTTGA..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................ACCGCGCATTCCCC------------------TGTCGCA..........................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................ATGAGGAT---GCG---------T------CCATTGACG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------T------CCATCGACGCGGAGATGGAACAGCTTGAGCTAGATTTCAGTGTTCGTGCCCA-CGCCCGCGCAAACGCTAACGCCAGCGCCAGCG---------------------G------------AAATGC------CAGCACCCT---------------GCCGCCTCCCTCGAAACCACCGCGCATTCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................AGCGACGCTCGATGAGGAT---GC...............................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCCTGCTGAACAACGGAG------TTAG---T..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TGTCGCAGGTGGAC------------GAGCAGC------------------------........................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................ATGGAACAGCTTGAGCTAGAT...........................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGGCG----------------------------TC---GGAAGCGGCAGCG........................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGGTGGAC------------GAGCA..................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................CGCCAGCGCCAGCG---------------------G------------AAATGC------CAGCAC.....................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AACAGCTTGAGCTAGATTTCAGT.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....TGCTGAACAACGGAG------TTAG---TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCCTCCCTCGAAACCACCG.............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CGCGGAGATGGAACAGCTTGAG.................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CCCGCGCAAACGCTAACGCCAGCGCCAG...........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GCTCGATGAGGAT---GCG---------T------CCATCG........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CGACGCTCGATGAGGAT---G................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droEre2

GCCCCTGCTGAACAACGGAG---GAGTTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTTCGTGCCCA-CGCCCGCACCAACGCCAACGCCAGCGCCAGCG------C---C------AGTGG------------AAGTGC------CAGCAACGT---------------GCCGCCTCCCTCGAAACCACCGCGCATCCCCC------------------TTTCGCAGGTGGAG------------GAGCAGC------------------------CTGCT-------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................A-CGCCCGCACCAACGCCAACGCCAGCGCC.............................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GATTTCAGTGTTCGTGCCC...........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GCCTCCCTCGAAACCACCGCGCA.........................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................GGTTTTGCCAGCGACGCTCG............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................GCCA------GCGGTTTTGCCAGCG...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................GTTAG---TGGCG----------------------------TC---GGAAGCGGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.........GAACAACGGAG---GAGTTAG---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................G---TGGCG----------------------------TC---GGAAGCGGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................GTTAG---TGGCG----------------------------TC---GGAAGCGGCA...........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................GCG------C---C------AGTGG------------AAGTGC------CAGC.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................................................................GCAGCGCGAAA------------------GGTAAGCC.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............CAACGGAG---GAGTTAG---TGGCG----------------------------TC---GGA..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

GCCCCTGCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---GGAAGCGGCAGCGCGAAA------------------GGTAAGCAA------GCGATTTTGCCAGCGACGCTCGATGAGGATGATGCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTTCGTGCCCA-CGCTCGCACCAACGCCAGCGCCAGCACCAGCG------C---C------AGTGG------------AAGTGC------CAGCATTCA---------------GCCGCCTCCCTCGAAACCGCCGCGCATCCCCC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........GAACAACGGAG------TTAG---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
......GCTGAACAACGGAG------TTAG---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...................G------TTAG---TGGCG----------------------------TC---GGAAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................GGCAGCGCGAAA------------------GGTAAGC..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GCTCGATGAGGATGATGCG---------C------C.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
GCCCCTGCTGAACAACGGAG------TTAG---T..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................C------------------TGTCGCAGGTGGAC------------GAGC...................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................AGCGCGAAA------------------GGTAAGCAA------GC................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................CGGCAGCGCGAAA------------------GGTAAT...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................G------C---C------AGTGG------------AAGTGC------CAGC.......................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................GATTTTGCCAGCGACGCTCGATGAGGAT....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................GGCAGCGCGAAA------------------GGTAAGCAA------G.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........GAACAACGGAG------TTAG---TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................G------TTAG---TGGCG----------------------------TC---GGAAGCGGCA...........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................CCAACGCCAGCGCCAGCACCAGC..........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................CAGCGACGCTCGATGAGGA.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACCGCCGCGCATCCCCC------------------TGTC.............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GCTCGATGAGGATGATGCG---------C------CCAT..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GCTGAACAACGGAG------TTAG---TGGCG----------------------------TC---.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GGAACAGCTTGAGCTCGATT..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TCA---------------GCCGCCTCCCTCGAAAC..................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..CCCTGCTGAACAACGGAG------TTAG---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GCCCCTGCTGAGCAACGGAC------TGGG---CGGCG----------------------------CT---GGAAGCGGCAGCGGGAAA------------------GGTAAGCAA------GCGGTTATGCCAGCAACGCTCGATGAGGAT---GCG---------C------CCATCGATGCGGATATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCCCGCGCCAACGCCAGCG---------------------------------G------------AAATGC------CAGCACCCT---------------GCCGCCACCCTCGAAGCCGCCGCGCAATCCCT------------------TGTCACAGGCGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCCCTGCTGAACAACGGAC------TGGC---CGGCG----------------------------TC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-CGCCCGCGCCAACGCCAGCG---------------------------------------GAAGCGGAAGCGC------CAGCACCCT---------------GCCGCCCCCCTCGAAGCCGCCGCGCATCCCTC------------------TGTCGCAG---GAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCTCTGCTGAGCAATGGAG------GAGG---AGTAG----------------------------CA---GGCGGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGATTTTGCCAGTGACGCTCGATGAGGATGATGCG---------C------CCATCGACGCGGATATGGAACAGCTTGAGCTCGATTTCAGTGTACGTGCCCA-CGCCCGCAGCAGCAACAGCA---------------------------------------------------G------CAGCACCCT---------------GCCGCCACCCTCGAAGCCGCCGCGCATTCCCC------------------TGGAGCAG------------------GAGCAGC------------------------CGGTG-------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCCCTGCTGAGCAATGGAG------TGG-------CACTTGGAGTGGCCGGAAGCGGAAGCGGAAAC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCAACGCTCGACGAGGAT---GCG---------T------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCCCGCGCTAATGCTAATGCCAATGCCAATG---GTAATGGTAATGGCAAT------GGCAGCGGTAGCGC------CAGCACCCT---------------GCCGCCTCCCTCGAAGCCACCTCGCATACCGC------------------TGTCGCAGGTGGAC------------GAGCAGC------------------------CGGCT-------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCCCTGCTGAGCAACGGAG------TGGG---TGGTC-------TCGCCGGAAACGGAGTCGGAATC---GGAAGCGGCAGCGGGAAA------------------GGTAAGCCA------GCGGTTTTGCCAGCGACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-CGCCCGCGCCAATGCCAGCGCAAATGCTAGCG------C---A------------GGCGGAAGCGGAAGCGCCAGCACCAGCACTGT---------------GCCGCCTCCCTCGAAGCCGCCGCGTATCCCGC------------------TG------GCGGAT------------GAGCAGC------------------------AGGTT-------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCCCTGCTGAACAATGGAG------TTGG---CGTCA-------TCGCCGGA------------GCA---GGCAGCGGCAGCGGGAAA------------------GGTAAGCCAGCA---GCGGTTTTGCCAGCTACGCTCGATGAGGAT---GCG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCG-CGTGC---CCAATGCCAGCGGAAATGG---------------A------AGTGGAAGTGGAAGCGGAAGCGGGAG---TAGCACCCT---------------GCCAGCTCCCTCGAAGCCACCGCGTATTCCCG------------------CATCGCTGGCGGAT------------GAGCAGC------------------------CAGCT-------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCCTTGCTGAGCAACGGCAACGGCGTGGT---CA-------------------------------TCGGTGGCGGCGGCAGCGGGAAA------------------GGTAAGCCA------ACGGTTTTACCAGCAACCCTCGATGAGGAT---GCG---------C------CCATCGATGCAGAGATGGAACAGCTTGAGATCGATTTCAGTGTACGTGCCCG-CGCCAGCA------------------------------------------------------------GCAG------CAGCACCCT---------------GCCGCCTCCCTCGAAGCCGCCACGCATTCCCTCCTCGCCGTCGTCTTTGTCGTCGCAGGTGGAG------------CAGCAGG------------------------AGGC--------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCCCTTGCTGAACAACAACAACGGAGTGAG---CAGCG--------------------------------------CGGCGG--CCAAA------------------GGTAAGCCA------GCGGGTAGGCCAGCAACCCTCGATGAGGACGATGTG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCTCGTGCGAATTCCAGCGCAGTCGGAGGAGGAGGAGGTGGAGCTGGTATT------GGAGGTGGACTTGC------CAGTACTCT---------------CC---CACCATCAAAGCCACCGCGTATTCCGG------------------AA---CAGCTGGAG------------AGGGAGCGGGAGCGTGAAAGGGAGAAGG---AACGT-------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................CAAA------------------GGTAAGCCA------GCGGGTAGGCCAGC....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...CTTGCTGAACAACAACAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................GTAGGCCAGCAACCCTCG............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............AACAACAACGGAGTGAG---CAGCG--------------------------------------CGGC............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............CAACAACAACGGAGTGAG---CAGCG--------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................AA------------------GGTAAGCCA------GCGGGTAGGCCAGCA...................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................ACGCGGAGATGGAACAGCTTGAGCTC..............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................AGCGCAGTCGGAGGAGGAGGA....................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................GCTCGATTTCAGTGTCCGTGCCC...........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.........GAACAACAACAACGGAGTGAG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........TGAACAACAACAACGGAGTGAG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................GGAGGAGGTGGAGCTGGT........................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGGAG------------AGGGAGCGGGAGC..........................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................G------------AGGGAGCGGGAGCGTGAAAGG..................................	22	1	1.00	1	0	0	0	0	0	1
..........AACAACAACAACGGAGTGAG---CAGCG--------------------------------------CG..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GTGGACTTGC------CAGTACTCT---------------CC---CACC..........................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................AGCG--------------------------------------CGGCGG--CCAAA------------------GGTAAGC..........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGGGAGAAGG---AACGT-------------------	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................TCCGG------------------AA---CAGCTGGAG------------AGGGAGCGGG.............................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TTCAGTGTCCGTGCCCA-TGCTCGTGC................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................GG------------------AA---CAGCTGGAG------------AGGGAGCGGGAGC..........................................	26	1	1.00	1	1	0	0	0	0	0
..............ACAACAACGGAGTGAG---CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................AGCGCAGTCGGAGGAGGAGGAGG..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................GAGGAGGAGGAGGTGGAGC............................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................GGAGGAGGAGGAGGTGGAGC............................................................................................................................................................................................	20	8	0.13	1	1	0	0	0	0	0

droBip1

ACCCTTGCTGAACAACAACAATGGCGT----------------------------------------G---AGCGGCGTGGGGGCCAAA------------------GGTAAGCCA------GCGGGTAGGCCAGCAACGCTCGATGAGGAT---ATG---------C------CCATCGACGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGTGCCCA-TGCTCGTGCGAATTCCAGCGCAGTCGGTGGTG------GTGGTGCTGGAGGTGGAGGAGGAGTCGGAGGCGT------TAGTACA------------------CTGCCTCCATCGAAGCCGCCGCGTATTCCGG------------------AG---CAACTGGAG------------AGGGAAC-------------------------GGGA-------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCCCTGCTGAGCAATGGCAATGGACTGGGCAATGGTG----TGGT------------------AATC---GGGAACGGC-GTGGGAAA-----GGTCCATCATGGAGGTAAGCCC------AACAAAAAGCCAGAGACGCTCGATGAAGAT---CCG---------C------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGCGCTC----------------------------------------------------------------------------------GCACCCT---------------ACCGCCTCCCTCGAAGCCGCCGCGCATCCCCC------------------AGCTCCAGCTGGAG------------GAGGAGA------------------------AGGACGAGCAGTA---------CC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......GCTGAGCAATGGCAATGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATCGATGCGGAGATGGAACAGCTTG...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................AATGGACTGGGCAATGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCTGGAG------------GAGGAGA------------------------AGGACGAGC...............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................GGT------------------AATC---GGGAACGGC-GTGGGAAA-----..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AGGTAAGCCC------AACAAAAAGCCAGA....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................C-GTGGGAAA-----GGTCCATCATGGAGAA..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATCGATGCGGAGATGGAAC.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................GGCAATGGACTGGGCAATGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................................................C---GGGAACGGC-GTGGGAAA-----GGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................ATC---GGGAACGGC-GTGGGAAA-----..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CAGAGACGCTCGATGAAG......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................CG---------C------CCATCGATGCGGAGATG.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGCTGGAG------------GAGGAGA------------------------AGGACGA.................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CCTGCTGAGCAATGGCAATGGACTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.CCCCTGCTGAGCAATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGATGAAGAT---CCG---------C------CCATCGATGCGGA.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................AATC---GGGAACGGC-GTGGGAAA-----GGTC..........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCCCCTGCTGAGCAATGGCAATGGACTGGGTAATGGTC----TGGC------------------AATC---GGGAACGGC-GTGGGAAA-----GGTCCATCATGGAGGTAAGCCC------AACAAAAAGCCAGAGACGCTCGATGAAGAT---CCG---------C------CCATCGATGCGGAGATGGAACAGCTTGAGCTCGATTTCAGTGTCCGCGCTC----------------------------------------------------------------------------------GCACCCT---------------ACCGCCTCCCTCGAAGCCGCCGCGCATCCCCC------------------AGCTCCAGCTGGAG------------GAGGAGA------------------------AGGAC-------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................ATC---GGGAACGGC-GTGGGAA....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................TAATGGTC----TGGC------------------AATC---GGGAACGGC-...........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................GAACGGC-GTGGGAAA-----GGTCCATCATGGA.................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCTGGAG------------GAGGAGA------------------------A.......................	20	1	1.00	1	0	1	0	0	0	0
.......CTGAGCAATGGCAATGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................GTAATGGTC----TGGC------------------AATC---GGGAAC...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......GCTGAGCAATGGCAATGGACTGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droWil2

GCCATTGCTAAATAATGGAG------GAGG---AGGAA-------CAGCA----------------GC---CGCAGCCGCAGCCAAAA-----------TGAATGGAGGTAAGCCGGATGCAAGGACTTT---------GCATGATGACGAT---GAGGCCAAAATGCAGCTTGATAATGTAAAGGAGATGGCACAGCTTGAGCTAGACTTCAGTGTACGGGCACAACACCCACA--------------GTC----------------------------------GCAGCAGA----------------CGCCATCGCCACCGCAGCCGTCGCCTCCCTCAAAGCCGCCTAG------------------------------GCAAAAGGAA------------GAGCAGC------------------------TGCCG-----CTACCACCGACGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAA------------GAGCAGC------------------------TGCCG-----CT............	22	1	1.00	1	0	0	1	0	0
................................................................................................................................TT---------GCATGATGACGAT---GAGGCC...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................ATGATGACGAT---GAGGCCAAAATGC....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................AGGAGATGGCACAGCTTGAGCT...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................CACAGCTTGAGCTAGACTTCAGT.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................TTT---------GCATGATGACGAT---GAGGC............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................AGACTTCAGTGTACGGGCA............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................GGCACAGCTTGAGCTAGACTTC........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................GAT---GAGGCCAAAATGCAGCTT...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
................GGAG------GAGG---AGGAA-------CAGCA----------------GC---CG...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................ATGATGACGAT---GAGGCCAAA........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................AAGGACTTT---------GCATGATGAC.......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
.............AATGGAG------GAGG---AGGAA-------CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................AATGCAGCTTGATAATGTAAAGGA.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................GATAATGTAAAGGAGATGG............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................ATCGCCACCGCAGCCGTCGCCTC...........................................................................................................................	23	1	1.00	1	0	0	1	0	0
................................................................................AGCCAAAA-----------TGAATGGAGGTAAGCC.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAA------------GAGCAGC------------------------TGCCG-----C.............	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................G------------------------------GCAAAAGGAA------------GAGCAGC------------------------........................	18	2	0.50	1	0	1	0	0	0

droVir3

GCCGCTGCTGAGCAACGGAA------ACGG---TGGTG-------------------------------------GTGGTGGCCCGAAGGGAAAA---CTCAACGGAGGTAAGCC---------CATAATGCAAGAGACACTCGATGAGGAT---------------C------CAATCGTTGCGGAGATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCGC----------------------------------------------------------------------------------GCACTCT---------------GCCACCTCCCTCAAAGCCGCCGCGCACCCCGC------------------AGACACAGCAAGAGCTGGAG------TCGGAAC--------------------------GCG-------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......GCTGAGCAACGGAA------ACGG---TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GAACAGCTTGAGCTCGATTTC........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GACACTCGATGAGGAT---------------C------CA............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCTGAGCAACGGAA------ACGG---TGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGATGGAACAGCTTGAGCTC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................GC----------------------------------------------------------------------------------GCACTCT---------------GCCACCTCCCTC.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....TGCTGAGCAACGGAA------ACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GAAGGGAAAA---CTCAACGGAG................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AATCGTTGCGGAGATGGAACA........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AT---------------C------CAATCGTTGCGGAGATG.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAATCGTTGCGGAGATGGAA..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................G-------------------------------------GTGGTGGCCCGAAGGGAAAA---CTC.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CAACGGAGGTAAGCC---------CATAAT..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GGAT---------------C------CAATCGTTGCGGA.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGATGGAACAGCTTGAGCT...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGATGAGGAT---------------C------CAATCGTTGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CGTTGCGGAGATGGAACAGCT.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCCCGAAGGGAAAA---CTCAACGGAGGTAAGCC---------C...............................................................................................................................................................................................................................................................................................................................................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................AGATGGAACAGCTTGAGCTCGAT...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................CGATGAGGAT---------------C------CAATCGTTGCGGA.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGGTGGCCCGAAGGGAAAA---CTCA......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................GATGAGGAT---------------C------CAATCGTTGCGGA.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CAACGGAGGTAAGCC---------CATAATGCAAGA....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GATGGAACAGCTTGAGCT...............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ACAGCTTGAGCTCGATTTCAGC.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGAACAGCTTGAGCTCGATTTCAGC.....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CCTCCCTCAAAGCCGCCGC............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGGAA------ACGG---TGGTG-------------------------------------GTGGT............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGCTGCTGAGCAACGGAA------ACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GC------------------AGACACAGCAAGAGCTGGA..............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AACAGCTTGAGCTCGATTTCAGC.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GAGACACTCGATGAGGAT---------------C------CA............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGAACAGCTTGAGCTCGATT..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGGAACAGCTTGAGCTCGATTTCAGC.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAAGCCGCCGCGCACCCCGC------------------A................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AAAA---CTCAACGGAGGTAAGCC---------................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GGAT---------------C------CAATCGTTGCGGAGATGGA...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................CAACGGAGGTAAGCC---------CATAATGC........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GATTTCAGCGTTCGTGCGC----------------------------------------------------------------------------------GC.......................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCCGCTGCTGAGCAACGGAG------GCAG---CATTG----------------------------------------------CCAAGGGGAAA---CTCAACGGAGGTAAGCC---------CAAATTGCAAGAGACAGTCGATGAGGAT---------------C------CCATCGTTGCGGAGATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCAC----------------------------------------------------------------------------------GCACTCT---------------GCCACCTCCCTCAAAGCCGCCACGCACGCAGC------------------AGACACAGCAGGAGCTG---------GAGCTGT------------------------TGG---------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................CTCAAAGCCGCCACGCACGCAGC------------------AGACAC...........................................................................	29	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAAGCCGCCACGCACGCAGC------------------AGA..............................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................AAGGGGAAA---CTCAACGGAG................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droGri2

GCCGCTGCTGATCAATGGCA------ATGG---TGGTG-------------------------------------------GCCCCAAGGGTAAA---CTGAACGGAGGTAAGCC---------CAAATTGCAAGAGACACTCGATGAGGATGCCAAA---------T------CGATCGTTGCCGAAATGGAACAGCTTGAGCTCGATTTCAGCGTTCGTGCAC----------------------------------------------------------------------------------GCACTCT---------------GCCGCCTCCCTCGAAGCCGCCGCGCACCCCGT------------------CGTCGCCACAAGAGCTGCAAATGGAGCGTGAAC------GCGAGGGGGATGGTCAAGGTGAT-------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................................................................GCACTCT---------------GCCGCCTCCCTCG......................................................................................................................	20	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................CGT------------------CGTCGCCACAAGAGCTGCAAA............................................................	24	1	1.00	1	1	0

dsi_21090

node_39788:28386-28535 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.6	-14.7	-14.7