ID:

dsi_2106

 Coordinate:

2r:5172798-5172947 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5171227_5172797_-]; CDS [2r_5171227_5172797_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCCTAATCGATTGTGGAGCATTCACATAGTCATCTCCGGAATTGTTATTGGAAAATTTCCAGCTCAAGTGTTCTTTCGAGTGTTTTGGTAAATGCATACCCTACTCGATGTGGGGCTATCATTTAAGCTCTGGTAATCCCGTTTCCGTATTATTGTATAAAAGGAACAGCGCGGAGTCCTCGCTATCAAGTAAGAAACATGCAGGGAACGCGGTTAGATCTTTTTGGCTTACTGGCTTGTGGGCTGCT
**************************************************(((((...)))))(((((((....)))..)))).......((((((.(((((((((.....)))))).)))))))))(((...((...((((((((((................))))..))).)))..))..)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................................GATCTTTTTGGCTTACTGGCTTGTGGGC.... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................GTAAGAAACATGCAGGGAACG...................................... 21 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................GTAAGAAACATGCAGGGAACGCGGTT................................. 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................GATCTTTTTGGCTTACTGG............. 19 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................CTTTTTGGCTTACTGGCTTGTAG...... 23 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................CGCGGTTAGATCTTTTTGGC.................... 20 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................TAAGAAACATGCAGGGAACGCGGTTAGAT............................. 29 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................TTACTGGCTTGTGGGCTGCT 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................GCAGGGAACGCGGTTAGAT............................. 19 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................GGTTAGATCTTTTTGGCTTACTGGCTTGT........ 29 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................ATCTTTTTGGCTTACTGGCTT.......... 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................ACATGCAGGGAACGCGGTTAGATCTTTTT....................... 29 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................................................CTTTTTGGCTTACTGGCTTGTGGGCTGC. 28 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................AAACATGCAGGGAACGCGGTT................................. 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................ATGCAGGGAACGCGGTTAGATCTTTTTG...................... 28 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................GGTTAGATCTTTTTGGCTTACTG.............. 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................AAGAAACATGCAGGGAACGCGGTTA................................ 25 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................GGTTAGATCTTTTTGGCTTAC................ 21 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................................CTTTTTGGCTTACTGGCTTTTG....... 22 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................TAGATCTTTTTGGCTTACTGGCT........... 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................GAAACATGCAGGGAACGCGGT.................................. 21 0 1 1.00 1 1 0 0 0 0
................................................AGTGGAAAATTTCCAGCT........................................................................................................................................................................................ 18 1 4 0.25 1 0 0 0 1 0
..........................CATGGTCTTCTCCGGAACT............................................................................................................................................................................................................. 19 3 11 0.09 1 0 1 0 0 0
..........................................................................................................................................................................................................................TGTCTTTTTCGCTTACTGGC............ 20 3 16 0.06 1 0 0 0 0 1
......................................................................................................................................................................................................................GTTAGATCTTTTTGT..................... 15 1 19 0.05 1 0 0 0 1 0
..........................CATAGTCATGACCGGACT.............................................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0
...........................................................................TTTCGAGTGATTTGGT............................................................................................................................................................... 16 1 20 0.05 1 0 0 0 1 0
..........................................................................................................................................................................................................................TGTCTTTTTCGCTTACTGG............. 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GGCGGATTAGCTAACACCTCGTAAGTGTATCAGTAGAGGCCTTAACAATAACCTTTTAAAGGTCGAGTTCACAAGAAAGCTCACAAAACCATTTACGTATGGGATGAGCTACACCCCGATAGTAAATTCGAGACCATTAGGGCAAAGGCATAATAACATATTTTCCTTGTCGCGCCTCAGGAGCGATAGTTCATTCTTTGTACGTCCCTTGCGCCAATCTAGAAAAACCGAATGACCGAACACCCGACGA
**************************************************(((((...)))))(((((((....)))..)))).......((((((.(((((((((.....)))))).)))))))))(((...((...((((((((((................))))..))).)))..))..)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................................................................TCCCTTGCGACAATCTA............................. 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.GCGGATTAGCTAACACCT....................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TTGCGCCAATCTAGAAAA........................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TCCCTTGCGCCAATCT.............................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................AAGTGTATCAGTAGAGGCC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTGCCTTGCTCCAATCT.............................. 17 2 6 0.67 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................GAGATCATTAGGGCACAG....................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................TCCCTTGCGTCAATCT.............................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCCGTGCGCCAATCT.............................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCCTTGCGCCAATC............................... 15 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................ACCAGCAGAGGGCTTAACAA.......................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCCCTGCGCCAATCTATA........................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................CCCTTGCGCCAATTTATA........................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTACTCCCCTTGCGCCA.................................. 17 2 8 0.13 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................GTGCCTTGCTCCAATC............................... 16 2 15 0.07 1 1 0 0 0 0 0 0 0 0
........................CTGTAAGAGTAGAGGCCTT............................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................TGCCTAGCGCCAATCT.............................. 16 2 18 0.06 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGTTCCTTGCTCCAATCT.............................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
..................................AGCGGCCTTAACAATAG....................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................GCATGTCGCGCCTCAG...................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................GTGCCTTGCTCCAATCTG............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................TTTAAATGTCGAGTT..................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:19 AM