ID:

dsi_2104

 Coordinate:

3l:16034396-16034545 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.3 -40.3 -40.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TCC)nSimple_repeatSimple_repeat+
mature
  1. 2l:802344-802364 +
  2. 2r:11690718-11690738 -
  3. dsi_1903  2r:15763096-15763116 +
  4. 3l:1360120-1360140 +
  5. dsi_2104  3l:16034488-16034508 -
  6. 3r:12313859-12313879 -
  7. 3r:12527150-12527170 -
  8. 3r:23773384-23773404 +
  9. x:1194942-1194962 -
  10. x:10329589-10329609 -
  11. x:14726538-14726558 -
  12. x:18542003-18542023 -
star

Sense Strand Reads

CTTTTTCCTCCGAGGAGCAAACATTCGCCAGCCGGCCAGCAGAGCAACTTTAATTGCTAGCCAAATAGAAGAAGGAAATGGCTCGAGGAGGAGGAGGAGGAGGAGTAGTAGGAGGAGGTGGCAAACCCTTTTCGCCACATCAATCAACAGGAGCTGAATCTCATCGTACTCATGGCTTTTTCTTCTTTTTTTTTTTACAGAAAACGGCGACAGCGAAACCGACGAAATATCATTATTATCCGCACAATCA
**************************************************........(((((...............))))).((((((((((((((((((((((((((.((.((((((((...........))))).(((.((.....))..)))..))).)).))))....))))))))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
..................................................................................................................................TCCGCCAAATCAATCAACAGA................................................................................................... 21 3 5 5.20 26 17 4 3 2 0 0 0
.........................................................................................................................................................................................TATTTTTTTTAACAGAAAACGGC.......................................... 23 2 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................TTTCCGCCAAATCAATCAACAGA................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TTTTCCTCTTTTTTTTTTGACATAAAAC............................................. 28 3 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................TTCCTCTTTTTTTTTTGACATAAAAC............................................. 26 3 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................CTTTCCGCCAAATCAATCAACAGA................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................TTCCGCCAAATCAATCAACAGA................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGACGACATATCATT................ 15 1 6 0.17 1 0 0 0 1 0 0 0
....................................CAGCAGAGCCACTTTCAT.................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 1 0 0
.................................................................................................................................................................................TTTTCTTGTTTTTTGTTTTCCAGA................................................. 24 3 11 0.09 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................TGAAAGATCATTATTATC.......... 18 2 12 0.08 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................AAAACGGCGACAGAGTAA................................ 18 2 12 0.08 1 0 0 0 0 0 0 1
.......................................................................................GAGGAGGAGGAGGAGGAGTAG.............................................................................................................................................. 21 0 12 0.08 1 0 0 0 0 0 1 0
.................................................................................................................................................................................TTTTCCTCTTTTTTTTTTGACATA................................................. 24 3 15 0.07 1 0 1 0 0 0 0 0
...................................................................................CGAGGAGGAGGAGGAGGAGG................................................................................................................................................... 20 0 17 0.06 1 0 0 0 0 1 0 0
......................................................................................GGAGGAGGAGGAGGAGGAG................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GAAAAAGGAGGCTCCTCGTTTGTAAGCGGTCGGCCGGTCGTCTCGTTGAAATTAACGATCGGTTTATCTTCTTCCTTTACCGAGCTCCTCCTCCTCCTCCTCCTCATCATCCTCCTCCACCGTTTGGGAAAAGCGGTGTAGTTAGTTGTCCTCGACTTAGAGTAGCATGAGTACCGAAAAAGAAGAAAAAAAAAAATGTCTTTTGCCGCTGTCGCTTTGGCTGCTTTATAGTAATAATAGGCGTGTTAGT
**************************************************........(((((...............))))).((((((((((((((((((((((((((.((.((((((((...........))))).(((.((.....))..)))..))).)).))))....))))))))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................CCTCGACTTAGAGTACCA................................................................................... 18 1 2 1.00 2 1 1 0 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTACCAT.................................................................................. 18 1 2 1.00 2 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................AAAAAAAATGTCTTCTGCCTGTGT...................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CCTCGACTTAGAGTA...................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................ACCGTTTGGGAAAAGCGGTGTAG............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CCTCGACTTAGTGTAACATGAT............................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................ACTCGACTTAGAGTA...................................................................................... 15 1 9 0.78 7 7 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAAAAAATGTCTATTGC............................................ 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTACGAT.................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................CTCGGCTTAGAGTACCAT.................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTAGAA................................................................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTAACA................................................................................... 17 1 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTACTATGAA............................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTATC.................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAAAAAATGTATTTTGCTGTTGT...................................... 24 3 4 0.25 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................AAAAAAAAAATGTCT................................................. 15 0 13 0.23 3 2 0 0 1 0 0 0 0 0
......................................................................................................................................................CTCGACTTCGAGTAACACGAG............................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTAAC.................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCGACTTAGAGTACCATCTG............................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AGTAAGTTGTACTCGACT............................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................AGTCGGATGAGTACCGA......................................................................... 17 2 7 0.14 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGCTGCTCTCGCTTTTGCTG........................... 21 3 8 0.13 1 0 0 0 0 0 1 0 0 0
......GGAGGCTCCTCTTTTATA.................................................................................................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.................................................................................GGGCTCCTCCTCCTCCTCCTCC................................................................................................................................................... 22 1 10 0.10 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................AAAAAAAAAAATGTCATTGTCC........................................... 22 3 10 0.10 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTGG..................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCGACTTAGAGTAA..................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGCTGTCGCTTGGACTG........................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAAAAAAAATGACTATTGCCT.......................................... 21 3 17 0.06 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAAAAAAAAATGTC.................................................. 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AAAAGAAGAAAAAAAAAAA...................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................AGAAGAAAAAAAAAA....................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................AAAAAAAATGTCTATGGC............................................ 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 01:50 AM